Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAAAATAAATCTTAGCTTGACGAGTGTGTTTCTTAAAGTAGGTGGTGGCAAGTAGGAAAGCATTTACTGATGACTAATCCAATCCAGGATTAGTATAAATAAGTCTTATAAGTTCAAAAGGAAGACATGAAAATCTTCAAGATCTGACAAAAGATAGATTAGGCGAGGGAAGTTGGGTTAGGCATTTTAAAAGGGGTTAGTGAGGAATCATTTTAGCACAGTGAGTGACCCTTCTAAGAATTTAAGAACAAAGTTTGTTACAATTTATCTTTTATAGTTTTGTTGTGATATGTATTTTGATGTATAAAATCAAGTTGTAATTAGTTTTATATGAAAGTATGTTTGACGAGAAAGTTTAAATTGTGTGTTTAACCATATGTAAACCATTAGCCTTGTTCATTTCTTAAGCTAGCTATTATGTGCACATAAAAGCGAAGGCGACCATGCGTTGAGTGGTCTGCATGGTGAGACGATGACTAAATATGTGGAGAAGGTTCGTATTTGAGCTGACCACCAAAGCAACTGAATGTGTGAACAGGTCTGCATGTTGCTAGCTATGGAAGAAAAAGTTCCATAGCCATAGCTCTTGCGTTGAGGTTCGAAAATCAAGCGAAATGAATAAAAGAAGGCTAATGCACTGTTTCTTATTCTCAACATAAGTTAAGGCATTAAGAGTTGAATTTGTTAAAATGATTATTGTTGTTAGCTTGTTTTCCCAAAAAGGTTGCATAAAATGTCAGTCACTAACCATTAGGCTTATGTTTTAAGTTTTCCTCCCCAAACGAGCAATGTTTCAGTAGAGGATGGCGAGTTTTTGATATGGTGCAAAGTGTGGAAGCTGTTCAAATGCTTTAAAACTTAGAAGTTTAAGTTTTGCTTGAGAGACTTGTATTATATCTTGTACCAAATTGTTTATCAATAAAGTTTGTGTAAGTTCATTTGAGATTTTTTAAATTCCTTTTTGATTCTCTTGAGTTGGGTGTAAAGTGGAGTGATAAGTTTTAAGTTTAGGCATTTTGATATTTCCTCACAAATATCGGAATTGCCTAAGTCGCAACTTGTTTAAGACGCGAGGAGAGTGTCTCGGATCAAAGTGTGACATTTTGGTATCAGAGCATGCCTAAAGTCTTGTGAAGTTGAGATGGTTTAAAGAAGTTGAAAGAATTATTTTATCAGATGCTAATTTCAAGTTGTTATGTTCAGAAAAGTATCATGTTGCGGGGATGAGGACGATGACAATCGAGAGATAGGTCACATACCACAACAAAACCCACAATGGATTCGGAGGCACAGTTTGTTAATCCAAATGGAAGGGAAATGCGAAGGAAGAATTATATGACCATGTGGCACAATGATTAATAGATGGTTTGTCTTGGGAACTGGAGAAGAAGTATGGAATAGAACGACTTAAGGCATTAGGTGCTAAGGAATTTACAGGAATGGTGGAATCTGAACAAGCAGAGAAATTGCTACGGATATTGGAAAAATGTTTCCACGTTATGCGGTGCCTCGAGGATAGGAAGGTGTCTTTAGCGGTGTTTTTGCTTCAAGAGGGATTTGAAGATTTGTGGATGTTGGAAAAGAACATGCGAGGAAATGTTGGGTTGACCGAAGTTCAAAGAAATTTTCAATGA
mRNA sequence
ATGACTAAAATAAATCTTAGCTTGACGAGTGTGTTTCTTAAAGTAGGTGGTGTTGTTATGTTCAGAAAAGTATCATGTTGCGGGGATGAGGACGATGACAATCGAGAGATAGGTCACATACCACAACAAAACCCACAATGGATTCGGAGGCACAATGGTTTGTCTTGGGAACTGGAGAAGAAGTATGGAATAGAACGACTTAAGGCATTAGGTGCTAAGGAATTTACAGGAATGGTGGAATCTGAACAAGCAGAGAAATTGCTACGGATATTGGAAAAATGTTTCCACGTTATGCGGTGCCTCGAGGATAGGAAGGTGTCTTTAGCGGTGTTTTTGCTTCAAGAGGGATTTGAAGATTTGTGGATGTTGGAAAAGAACATGCGAGGAAATGTTGGGTTGACCGAAGTTCAAAGAAATTTTCAATGA
Coding sequence (CDS)
ATGACTAAAATAAATCTTAGCTTGACGAGTGTGTTTCTTAAAGTAGGTGGTGTTGTTATGTTCAGAAAAGTATCATGTTGCGGGGATGAGGACGATGACAATCGAGAGATAGGTCACATACCACAACAAAACCCACAATGGATTCGGAGGCACAATGGTTTGTCTTGGGAACTGGAGAAGAAGTATGGAATAGAACGACTTAAGGCATTAGGTGCTAAGGAATTTACAGGAATGGTGGAATCTGAACAAGCAGAGAAATTGCTACGGATATTGGAAAAATGTTTCCACGTTATGCGGTGCCTCGAGGATAGGAAGGTGTCTTTAGCGGTGTTTTTGCTTCAAGAGGGATTTGAAGATTTGTGGATGTTGGAAAAGAACATGCGAGGAAATGTTGGGTTGACCGAAGTTCAAAGAAATTTTCAATGA
Protein sequence
MTKINLSLTSVFLKVGGVVMFRKVSCCGDEDDDNREIGHIPQQNPQWIRRHNGLSWELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFEDLWMLEKNMRGNVGLTEVQRNFQ
Homology
BLAST of PI0015418 vs. ExPASy TrEMBL
Match:
A0A0A0LVF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 5.8e-18
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0
Query: 6 LSLTSVFLKVGGV--VMFRKVSCCGDEDDDNREIGHIPQQNPQWIRRHNGLSWELEKKYG 65
+SLT LK+ G+ K SCC +ED D++ Q +P W +R + +KKYG
Sbjct: 3 ISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPS----HRKKKYG 62
Query: 66 IERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFED 120
IE++KA G KEF+ VE EQA K LR LEKCF V++CLE+RK+ LA FLL ED
Sbjct: 63 IEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114
BLAST of PI0015418 vs. ExPASy TrEMBL
Match:
A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 6.4e-17
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 0
Query: 52 NGLSWELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVF 111
N L+ +L+K +GIER+KALGA EF G+ E+AEK +R LEKCF VM+C ++R+V+LAVF
Sbjct: 34 NALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVF 93
Query: 112 LLQEGFEDLWMLEKNMRGNV 132
LL E ED W+LE+N RG V
Sbjct: 94 LLLERAEDWWILEENRRGIV 113
BLAST of PI0015418 vs. ExPASy TrEMBL
Match:
A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0
Query: 59 EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
EKKYGIERLKALGA F G AE L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 53 EKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFLLQNGAE 112
Query: 119 DLWMLEKNMR---GNVGLTEVQRNF 141
D W +E++ R G++ E ++ F
Sbjct: 113 DWWRMEESRRRTTGDISWNEFKKAF 137
BLAST of PI0015418 vs. ExPASy TrEMBL
Match:
A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)
HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0
Query: 59 EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
EKKYGIERLKALGA F G AE+ L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 65 EKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAE 124
Query: 119 DLWMLEKNMRGNVG 133
D W +E++ R G
Sbjct: 125 DWWHMEESRRRTTG 138
BLAST of PI0015418 vs. ExPASy TrEMBL
Match:
A0A5D3C1T8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00310 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 8.7e-14
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 0
Query: 57 ELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEG 116
+LEKK+GIERLKALG F G AE L ++EKCF VMRCLEDRKV LA FLLQ G
Sbjct: 199 DLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLEDRKVELAAFLLQNG 258
Query: 117 FEDLWMLEKNMRGNVGLTE 136
+ W +E+ + LT+
Sbjct: 259 AKYWWRMEEKRSEFLRLTQ 277
BLAST of PI0015418 vs. NCBI nr
Match:
KGN64939.1 (hypothetical protein Csa_022824 [Cucumis sativus])
HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0
Query: 6 LSLTSVFLKVGGV--VMFRKVSCCGDEDDDNREIGHIPQQNPQWIRRHNGLSWELEKKYG 65
+SLT LK+ G+ K SCC +ED D++ Q +P W +R + +KKYG
Sbjct: 3 ISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPS----HRKKKYG 62
Query: 66 IERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFED 120
IE++KA G KEF+ VE EQA K LR LEKCF V++CLE+RK+ LA FLL ED
Sbjct: 63 IEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114
BLAST of PI0015418 vs. NCBI nr
Match:
KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])
HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 0
Query: 52 NGLSWELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVF 111
N L+ +L+K +GIER+KALGA EF G+ E+AEK +R LEKCF VM+C ++R+V+LAVF
Sbjct: 34 NALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVF 93
Query: 112 LLQEGFEDLWMLEKNMRGNV 132
LL E ED W+LE+N RG V
Sbjct: 94 LLLERAEDWWILEENRRGIV 113
BLAST of PI0015418 vs. NCBI nr
Match:
KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 89.7 bits (221), Expect = 2.1e-14
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0
Query: 59 EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
EKKYGIERLKALGA F G AE L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 53 EKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFLLQNGAE 112
Query: 119 DLWMLEKNMR---GNVGLTEVQRNF 141
D W +E++ R G++ E ++ F
Sbjct: 113 DWWRMEESRRRTTGDISWNEFKKAF 137
BLAST of PI0015418 vs. NCBI nr
Match:
KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 89.4 bits (220), Expect = 2.8e-14
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0
Query: 59 EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
EKKYGIERLKALGA F G AE+ L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 65 EKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAE 124
Query: 119 DLWMLEKNMRGNVG 133
D W +E++ R G
Sbjct: 125 DWWHMEESRRRTTG 138
BLAST of PI0015418 vs. NCBI nr
Match:
KAA0063973.1 (uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK05168.1 uncharacterized protein E5676_scaffold1415G00310 [Cucumis melo var. makuwa])
HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 0
Query: 57 ELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEG 116
+LEKK+GIERLKALG F G AE L ++EKCF VMRCLEDRKV LA FLLQ G
Sbjct: 199 DLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLEDRKVELAAFLLQNG 258
Query: 117 FEDLWMLEKNMRGNVGLTE 136
+ W +E+ + LT+
Sbjct: 259 AKYWWRMEEKRSEFLRLTQ 277
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LVF8 | 5.8e-18 | 47.41 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1 | [more] |
| A0A0A0LI31 | 6.4e-17 | 58.75 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1 | [more] |
| A0A5A7UZM6 | 1.0e-14 | 54.12 | Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
| A0A5A7SJ99 | 1.3e-14 | 59.46 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A5D3C1T8 | 8.7e-14 | 54.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN64939.1 | 1.2e-17 | 47.41 | hypothetical protein Csa_022824 [Cucumis sativus] | [more] |
| KGN61535.1 | 1.3e-16 | 58.75 | hypothetical protein Csa_006696 [Cucumis sativus] | [more] |
| KAA0060484.1 | 2.1e-14 | 54.12 | Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag... | [more] |
| KAA0026280.1 | 2.8e-14 | 59.46 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D... | [more] |
| KAA0063973.1 | 1.8e-13 | 54.43 | uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
