PI0015418 (gene) Melon (PI 482460) v1

Overview


Name	PI0015418
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr06: 18486934 .. 18488572 (+)
RNA-Seq Expression	PI0015418
Synteny	PI0015418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAAATAAATCTTAGCTTGACGAGTGTGTTTCTTAAAGTAGGTGGTGGCAAGTAGGAAAGCATTTACTGATGACTAATCCAATCCAGGATTAGTATAAATAAGTCTTATAAGTTCAAAAGGAAGACATGAAAATCTTCAAGATCTGACAAAAGATAGATTAGGCGAGGGAAGTTGGGTTAGGCATTTTAAAAGGGGTTAGTGAGGAATCATTTTAGCACAGTGAGTGACCCTTCTAAGAATTTAAGAACAAAGTTTGTTACAATTTATCTTTTATAGTTTTGTTGTGATATGTATTTTGATGTATAAAATCAAGTTGTAATTAGTTTTATATGAAAGTATGTTTGACGAGAAAGTTTAAATTGTGTGTTTAACCATATGTAAACCATTAGCCTTGTTCATTTCTTAAGCTAGCTATTATGTGCACATAAAAGCGAAGGCGACCATGCGTTGAGTGGTCTGCATGGTGAGACGATGACTAAATATGTGGAGAAGGTTCGTATTTGAGCTGACCACCAAAGCAACTGAATGTGTGAACAGGTCTGCATGTTGCTAGCTATGGAAGAAAAAGTTCCATAGCCATAGCTCTTGCGTTGAGGTTCGAAAATCAAGCGAAATGAATAAAAGAAGGCTAATGCACTGTTTCTTATTCTCAACATAAGTTAAGGCATTAAGAGTTGAATTTGTTAAAATGATTATTGTTGTTAGCTTGTTTTCCCAAAAAGGTTGCATAAAATGTCAGTCACTAACCATTAGGCTTATGTTTTAAGTTTTCCTCCCCAAACGAGCAATGTTTCAGTAGAGGATGGCGAGTTTTTGATATGGTGCAAAGTGTGGAAGCTGTTCAAATGCTTTAAAACTTAGAAGTTTAAGTTTTGCTTGAGAGACTTGTATTATATCTTGTACCAAATTGTTTATCAATAAAGTTTGTGTAAGTTCATTTGAGATTTTTTAAATTCCTTTTTGATTCTCTTGAGTTGGGTGTAAAGTGGAGTGATAAGTTTTAAGTTTAGGCATTTTGATATTTCCTCACAAATATCGGAATTGCCTAAGTCGCAACTTGTTTAAGACGCGAGGAGAGTGTCTCGGATCAAAGTGTGACATTTTGGTATCAGAGCATGCCTAAAGTCTTGTGAAGTTGAGATGGTTTAAAGAAGTTGAAAGAATTATTTTATCAGATGCTAATTTCAAGTTGTTATGTTCAGAAAAGTATCATGTTGCGGGGATGAGGACGATGACAATCGAGAGATAGGTCACATACCACAACAAAACCCACAATGGATTCGGAGGCACAGTTTGTTAATCCAAATGGAAGGGAAATGCGAAGGAAGAATTATATGACCATGTGGCACAATGATTAATAGATGGTTTGTCTTGGGAACTGGAGAAGAAGTATGGAATAGAACGACTTAAGGCATTAGGTGCTAAGGAATTTACAGGAATGGTGGAATCTGAACAAGCAGAGAAATTGCTACGGATATTGGAAAAATGTTTCCACGTTATGCGGTGCCTCGAGGATAGGAAGGTGTCTTTAGCGGTGTTTTTGCTTCAAGAGGGATTTGAAGATTTGTGGATGTTGGAAAAGAACATGCGAGGAAATGTTGGGTTGACCGAAGTTCAAAGAAATTTTCAATGA

mRNA sequence

ATGACTAAAATAAATCTTAGCTTGACGAGTGTGTTTCTTAAAGTAGGTGGTGTTGTTATGTTCAGAAAAGTATCATGTTGCGGGGATGAGGACGATGACAATCGAGAGATAGGTCACATACCACAACAAAACCCACAATGGATTCGGAGGCACAATGGTTTGTCTTGGGAACTGGAGAAGAAGTATGGAATAGAACGACTTAAGGCATTAGGTGCTAAGGAATTTACAGGAATGGTGGAATCTGAACAAGCAGAGAAATTGCTACGGATATTGGAAAAATGTTTCCACGTTATGCGGTGCCTCGAGGATAGGAAGGTGTCTTTAGCGGTGTTTTTGCTTCAAGAGGGATTTGAAGATTTGTGGATGTTGGAAAAGAACATGCGAGGAAATGTTGGGTTGACCGAAGTTCAAAGAAATTTTCAATGA

Coding sequence (CDS)

ATGACTAAAATAAATCTTAGCTTGACGAGTGTGTTTCTTAAAGTAGGTGGTGTTGTTATGTTCAGAAAAGTATCATGTTGCGGGGATGAGGACGATGACAATCGAGAGATAGGTCACATACCACAACAAAACCCACAATGGATTCGGAGGCACAATGGTTTGTCTTGGGAACTGGAGAAGAAGTATGGAATAGAACGACTTAAGGCATTAGGTGCTAAGGAATTTACAGGAATGGTGGAATCTGAACAAGCAGAGAAATTGCTACGGATATTGGAAAAATGTTTCCACGTTATGCGGTGCCTCGAGGATAGGAAGGTGTCTTTAGCGGTGTTTTTGCTTCAAGAGGGATTTGAAGATTTGTGGATGTTGGAAAAGAACATGCGAGGAAATGTTGGGTTGACCGAAGTTCAAAGAAATTTTCAATGA

Protein sequence

MTKINLSLTSVFLKVGGVVMFRKVSCCGDEDDDNREIGHIPQQNPQWIRRHNGLSWELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFEDLWMLEKNMRGNVGLTEVQRNFQ

Homology

[Close]

BLAST of PI0015418 vs. ExPASy TrEMBL
Match: A0A0A0LVF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.8e-18
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 6   LSLTSVFLKVGGV--VMFRKVSCCGDEDDDNREIGHIPQQNPQWIRRHNGLSWELEKKYG 65
           +SLT   LK+ G+      K SCC +ED D++      Q +P W +R +      +KKYG
Sbjct: 3   ISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPS----HRKKKYG 62

Query: 66  IERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFED 120
           IE++KA G KEF+  VE EQA K LR LEKCF V++CLE+RK+ LA FLL    ED
Sbjct: 63  IEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of PI0015418 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.4e-17
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 52  NGLSWELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVF 111
           N L+ +L+K +GIER+KALGA EF G+   E+AEK +R LEKCF VM+C ++R+V+LAVF
Sbjct: 34  NALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVF 93

Query: 112 LLQEGFEDLWMLEKNMRGNV 132
           LL E  ED W+LE+N RG V
Sbjct: 94  LLLERAEDWWILEENRRGIV 113

[Close]

BLAST of PI0015418 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 59  EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
           EKKYGIERLKALGA  F G      AE  L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 53  EKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFLLQNGAE 112

Query: 119 DLWMLEKNMR---GNVGLTEVQRNF 141
           D W +E++ R   G++   E ++ F
Sbjct: 113 DWWRMEESRRRTTGDISWNEFKKAF 137

[Close]

BLAST of PI0015418 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 59  EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
           EKKYGIERLKALGA  F G      AE+ L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 65  EKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAE 124

Query: 119 DLWMLEKNMRGNVG 133
           D W +E++ R   G
Sbjct: 125 DWWHMEESRRRTTG 138

[Close]

BLAST of PI0015418 vs. ExPASy TrEMBL
Match: A0A5D3C1T8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00310 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.7e-14
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 57  ELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEG 116
           +LEKK+GIERLKALG   F G      AE  L ++EKCF VMRCLEDRKV LA FLLQ G
Sbjct: 199 DLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLEDRKVELAAFLLQNG 258

Query: 117 FEDLWMLEKNMRGNVGLTE 136
            +  W +E+     + LT+
Sbjct: 259 AKYWWRMEEKRSEFLRLTQ 277

[Close]

BLAST of PI0015418 vs. NCBI nr
Match: KGN64939.1 (hypothetical protein Csa_022824 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 6   LSLTSVFLKVGGV--VMFRKVSCCGDEDDDNREIGHIPQQNPQWIRRHNGLSWELEKKYG 65
           +SLT   LK+ G+      K SCC +ED D++      Q +P W +R +      +KKYG
Sbjct: 3   ISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPS----HRKKKYG 62

Query: 66  IERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFED 120
           IE++KA G KEF+  VE EQA K LR LEKCF V++CLE+RK+ LA FLL    ED
Sbjct: 63  IEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of PI0015418 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 52  NGLSWELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVF 111
           N L+ +L+K +GIER+KALGA EF G+   E+AEK +R LEKCF VM+C ++R+V+LAVF
Sbjct: 34  NALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVF 93

Query: 112 LLQEGFEDLWMLEKNMRGNV 132
           LL E  ED W+LE+N RG V
Sbjct: 94  LLLERAEDWWILEENRRGIV 113

[Close]

BLAST of PI0015418 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-14
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 59  EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
           EKKYGIERLKALGA  F G      AE  L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 53  EKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFLLQNGAE 112

Query: 119 DLWMLEKNMR---GNVGLTEVQRNF 141
           D W +E++ R   G++   E ++ F
Sbjct: 113 DWWRMEESRRRTTGDISWNEFKKAF 137

[Close]

BLAST of PI0015418 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-14
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 59  EKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEGFE 118
           EKKYGIERLKALGA  F G      AE+ L ++EKCF V RC EDRKV LA FLLQ G E
Sbjct: 65  EKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQNGAE 124

Query: 119 DLWMLEKNMRGNVG 133
           D W +E++ R   G
Sbjct: 125 DWWHMEESRRRTTG 138

[Close]

BLAST of PI0015418 vs. NCBI nr
Match: KAA0063973.1 (uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK05168.1 uncharacterized protein E5676_scaffold1415G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 57  ELEKKYGIERLKALGAKEFTGMVESEQAEKLLRILEKCFHVMRCLEDRKVSLAVFLLQEG 116
           +LEKK+GIERLKALG   F G      AE  L ++EKCF VMRCLEDRKV LA FLLQ G
Sbjct: 199 DLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLEDRKVELAAFLLQNG 258

Query: 117 FEDLWMLEKNMRGNVGLTE 136
            +  W +E+     + LT+
Sbjct: 259 AKYWWRMEEKRSEFLRLTQ 277

The following BLAST results are available for this feature:

BLAST of PI0015418 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015418 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVF8	5.8e-18	47.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1	[more]
A0A0A0LI31	6.4e-17	58.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1	[more]
A0A5A7UZM6	1.0e-14	54.12	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7SJ99	1.3e-14	59.46	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3C1T8	8.7e-14	54.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0015418 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64939.1	1.2e-17	47.41	hypothetical protein Csa_022824 [Cucumis sativus]	[more]
KGN61535.1	1.3e-16	58.75	hypothetical protein Csa_006696 [Cucumis sativus]	[more]
KAA0060484.1	2.1e-14	54.12	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0026280.1	2.8e-14	59.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]
KAA0063973.1	1.8e-13	54.43	uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of PI0015418 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015418.1	PI0015418.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups