Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTAAGTTAATTCTTCTCTGTTTAATCGCATGTTTCACTTTGTTATAAAGATAGATCGCTGAGACAACTCTTTATTGCAATTTGACACATCCTTTCTCGCATAGCTCTTTCTCGCATATTCTTTAAAGAAGTGTGTTTCTAATTACTTTTGCTTATGTGATAAGTAGTGTGCATTTAGTTGCTATTAGTCCTTACCGCATACTTCAATTTGTAAGGAAGACAAAAAGATTCTATAGATTTCTATTCCACCTTCTGTCTCATTCCACTATTTCTATACCGCTTTTATTTTCTTTTTCTCTTTCTCGCATACACAAACCCACCCTACTACTAACTCTTTTCGTGTCTTGAAGCTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACAGTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAATATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA
mRNA sequence
ATGCCTCTAACTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACAGTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAATATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA
Coding sequence (CDS)
ATGCCTCTAACTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACAGTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAATATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA
Protein sequence
MPLTILLYFKPNINLKARFAPLGTTTSSSTILPLHLQFDQNGTVAGDHDAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPS
Homology
BLAST of PI0012858 vs. ExPASy TrEMBL
Match:
A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)
HSP 1 Score: 219.5 bits (558), Expect = 1.1e-53
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 0
Query: 33 PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
P +Q+ +G ++ D D AGGALADKTPTEARELISRM E SQ+FGNRASELDNSL
Sbjct: 96 PSLIQYFHSGLLSFDRNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSL 155
Query: 93 TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
TKEVSELKSQMLNMTTLLTSFVQG KV KCGVCGLVGHPNDKC ++E N++R+YDP
Sbjct: 156 TKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDP 215
Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
HSNTYN+GWRDNPNLRWGNDNQ+
Sbjct: 216 HSNTYNSGWRDNPNLRWGNDNQK 238
BLAST of PI0012858 vs. ExPASy TrEMBL
Match:
A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 2.4e-53
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0
Query: 49 DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
DA AGGALADK PTEARELIS+M E SQ+F NRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 88 DAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNMTTLLT 147
Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
SFVQG +KV KCGVCGLVGHPNDKCP+++E N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 148 SFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGN 207
Query: 169 DNQR 173
DNQ+
Sbjct: 208 DNQK 211
BLAST of PI0012858 vs. ExPASy TrEMBL
Match:
A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 4.0e-53
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 0
Query: 49 DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
D AAGGALADKTPTEARELISRM E S++FGNRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 52 DVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLT 111
Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
SFVQG KV KCGVCGLVGHPNDKCP ++E N++R+YDPHSNTYN+GWRDN NLRWGN
Sbjct: 112 SFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGN 171
Query: 169 DNQR 173
DNQ+
Sbjct: 172 DNQK 175
BLAST of PI0012858 vs. ExPASy TrEMBL
Match:
A0A5D3D815 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00050 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 4.0e-53
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0
Query: 49 DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
DAAAGGALADKTPTEARELISRMTE SQ+FGNRASEL+N LTK VSELKSQMLNMTTLLT
Sbjct: 3 DAAAGGALADKTPTEARELISRMTENSQSFGNRASELENFLTKVVSELKSQMLNMTTLLT 62
Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
S +QG +KV KCGVCGLVGHPNDKCP+++E N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 63 SLLQGTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGN 122
Query: 169 DNQR 173
DNQ+
Sbjct: 123 DNQK 126
BLAST of PI0012858 vs. ExPASy TrEMBL
Match:
A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 6.9e-53
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 33 PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
P +Q+ +G ++ D DAAA GALADKTP EARELI RM E SQNFGNRASELDNSL
Sbjct: 92 PSLIQYFYSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSL 151
Query: 93 TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
TKEVSELKSQMLNMTTLLTSFVQG +KV KCGVCGLVG+PNDKCP ++E N++R+YDP
Sbjct: 152 TKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDP 211
Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
H NTYN GWRDNPNLRWGNDNQ+
Sbjct: 212 HGNTYNLGWRDNPNLRWGNDNQK 234
BLAST of PI0012858 vs. NCBI nr
Match:
KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 219.5 bits (558), Expect = 2.2e-53
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 0
Query: 33 PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
P +Q+ +G ++ D D AGGALADKTPTEARELISRM E SQ+FGNRASELDNSL
Sbjct: 96 PSLIQYFHSGLLSFDRNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSL 155
Query: 93 TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
TKEVSELKSQMLNMTTLLTSFVQG KV KCGVCGLVGHPNDKC ++E N++R+YDP
Sbjct: 156 TKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDP 215
Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
HSNTYN+GWRDNPNLRWGNDNQ+
Sbjct: 216 HSNTYNSGWRDNPNLRWGNDNQK 238
BLAST of PI0012858 vs. NCBI nr
Match:
KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 218.4 bits (555), Expect = 4.9e-53
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0
Query: 49 DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
DA AGGALADK PTEARELIS+M E SQ+F NRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 88 DAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNMTTLLT 147
Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
SFVQG +KV KCGVCGLVGHPNDKCP+++E N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 148 SFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGN 207
Query: 169 DNQR 173
DNQ+
Sbjct: 208 DNQK 211
BLAST of PI0012858 vs. NCBI nr
Match:
TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.6 bits (553), Expect = 8.3e-53
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 0
Query: 49 DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
D AAGGALADKTPTEARELISRM E S++FGNRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 52 DVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLT 111
Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
SFVQG KV KCGVCGLVGHPNDKCP ++E N++R+YDPHSNTYN+GWRDN NLRWGN
Sbjct: 112 SFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGN 171
Query: 169 DNQR 173
DNQ+
Sbjct: 172 DNQK 175
BLAST of PI0012858 vs. NCBI nr
Match:
TYK19600.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.6 bits (553), Expect = 8.3e-53
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0
Query: 49 DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
DAAAGGALADKTPTEARELISRMTE SQ+FGNRASEL+N LTK VSELKSQMLNMTTLLT
Sbjct: 3 DAAAGGALADKTPTEARELISRMTENSQSFGNRASELENFLTKVVSELKSQMLNMTTLLT 62
Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
S +QG +KV KCGVCGLVGHPNDKCP+++E N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 63 SLLQGTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGN 122
Query: 169 DNQR 173
DNQ+
Sbjct: 123 DNQK 126
BLAST of PI0012858 vs. NCBI nr
Match:
KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 33 PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
P +Q+ +G ++ D DAAA GALADKTP EARELI RM E SQNFGNRASELDNSL
Sbjct: 92 PSLIQYFYSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSL 151
Query: 93 TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
TKEVSELKSQMLNMTTLLTSFVQG +KV KCGVCGLVG+PNDKCP ++E N++R+YDP
Sbjct: 152 TKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDP 211
Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
H NTYN GWRDNPNLRWGNDNQ+
Sbjct: 212 HGNTYNLGWRDNPNLRWGNDNQK 234
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V0Q7 | 1.1e-53 | 75.52 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5D3CRR8 | 2.4e-53 | 83.06 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5D3CB46 | 4.0e-53 | 83.87 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5D3D815 | 4.0e-53 | 83.06 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7SQH8 | 6.9e-53 | 74.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
KAA0061138.1 | 2.2e-53 | 75.52 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0047407.1 | 4.9e-53 | 83.06 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... | [more] |
TYK07549.1 | 8.3e-53 | 83.87 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
TYK19600.1 | 8.3e-53 | 83.06 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0032798.1 | 1.4e-52 | 74.83 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos... | [more] |
Match Name | E-value | Identity | Description | |