PI0012858 (gene) Melon (PI 482460) v1

Overview


Name	PI0012858
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr12: 20846630 .. 20847499 (-)
RNA-Seq Expression	PI0012858
Synteny	PI0012858

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTAAGTTAATTCTTCTCTGTTTAATCGCATGTTTCACTTTGTTATAAAGATAGATCGCTGAGACAACTCTTTATTGCAATTTGACACATCCTTTCTCGCATAGCTCTTTCTCGCATATTCTTTAAAGAAGTGTGTTTCTAATTACTTTTGCTTATGTGATAAGTAGTGTGCATTTAGTTGCTATTAGTCCTTACCGCATACTTCAATTTGTAAGGAAGACAAAAAGATTCTATAGATTTCTATTCCACCTTCTGTCTCATTCCACTATTTCTATACCGCTTTTATTTTCTTTTTCTCTTTCTCGCATACACAAACCCACCCTACTACTAACTCTTTTCGTGTCTTGAAGCTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACAGTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAATATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA

mRNA sequence

ATGCCTCTAACTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACAGTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAATATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA

Coding sequence (CDS)

ATGCCTCTAACTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACAGTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAATATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA

Protein sequence

MPLTILLYFKPNINLKARFAPLGTTTSSSTILPLHLQFDQNGTVAGDHDAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPS

Homology

[Close]

BLAST of PI0012858 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.1e-53
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 33  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
           P  +Q+  +G ++ D    D  AGGALADKTPTEARELISRM E SQ+FGNRASELDNSL
Sbjct: 96  PSLIQYFHSGLLSFDRNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSL 155

Query: 93  TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
           TKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E  N++R+YDP
Sbjct: 156 TKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDP 215

Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
           HSNTYN+GWRDNPNLRWGNDNQ+
Sbjct: 216 HSNTYNSGWRDNPNLRWGNDNQK 238

[Close]

BLAST of PI0012858 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.4e-53
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 49  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
           DA AGGALADK PTEARELIS+M E SQ+F NRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 88  DAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNMTTLLT 147

Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
           SFVQG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 148 SFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGN 207

Query: 169 DNQR 173
           DNQ+
Sbjct: 208 DNQK 211

[Close]

BLAST of PI0012858 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.0e-53
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 49  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
           D AAGGALADKTPTEARELISRM E S++FGNRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 52  DVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLT 111

Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
           SFVQG   KV KCGVCGLVGHPNDKCP ++E  N++R+YDPHSNTYN+GWRDN NLRWGN
Sbjct: 112 SFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGN 171

Query: 169 DNQR 173
           DNQ+
Sbjct: 172 DNQK 175

[Close]

BLAST of PI0012858 vs. ExPASy TrEMBL
Match: A0A5D3D815 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00050 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.0e-53
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 49  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
           DAAAGGALADKTPTEARELISRMTE SQ+FGNRASEL+N LTK VSELKSQMLNMTTLLT
Sbjct: 3   DAAAGGALADKTPTEARELISRMTENSQSFGNRASELENFLTKVVSELKSQMLNMTTLLT 62

Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
           S +QG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 63  SLLQGTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGN 122

Query: 169 DNQR 173
           DNQ+
Sbjct: 123 DNQK 126

[Close]

BLAST of PI0012858 vs. ExPASy TrEMBL
Match: A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.9e-53
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 33  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
           P  +Q+  +G ++ D    DAAA GALADKTP EARELI RM E SQNFGNRASELDNSL
Sbjct: 92  PSLIQYFYSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSL 151

Query: 93  TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
           TKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E  N++R+YDP
Sbjct: 152 TKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDP 211

Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
           H NTYN GWRDNPNLRWGNDNQ+
Sbjct: 212 HGNTYNLGWRDNPNLRWGNDNQK 234

[Close]

BLAST of PI0012858 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-53
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 33  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
           P  +Q+  +G ++ D    D  AGGALADKTPTEARELISRM E SQ+FGNRASELDNSL
Sbjct: 96  PSLIQYFHSGLLSFDRNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSL 155

Query: 93  TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
           TKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E  N++R+YDP
Sbjct: 156 TKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDP 215

Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
           HSNTYN+GWRDNPNLRWGNDNQ+
Sbjct: 216 HSNTYNSGWRDNPNLRWGNDNQK 238

[Close]

BLAST of PI0012858 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 4.9e-53
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 49  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
           DA AGGALADK PTEARELIS+M E SQ+F NRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 88  DAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNMTTLLT 147

Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
           SFVQG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 148 SFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGN 207

Query: 169 DNQR 173
           DNQ+
Sbjct: 208 DNQK 211

[Close]

BLAST of PI0012858 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 8.3e-53
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 49  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
           D AAGGALADKTPTEARELISRM E S++FGNRASELDNSLTKEVSELKSQMLNMTTLLT
Sbjct: 52  DVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLT 111

Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
           SFVQG   KV KCGVCGLVGHPNDKCP ++E  N++R+YDPHSNTYN+GWRDN NLRWGN
Sbjct: 112 SFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGN 171

Query: 169 DNQR 173
           DNQ+
Sbjct: 172 DNQK 175

[Close]

BLAST of PI0012858 vs. NCBI nr
Match: TYK19600.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 8.3e-53
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 49  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLT 108
           DAAAGGALADKTPTEARELISRMTE SQ+FGNRASEL+N LTK VSELKSQMLNMTTLLT
Sbjct: 3   DAAAGGALADKTPTEARELISRMTENSQSFGNRASELENFLTKVVSELKSQMLNMTTLLT 62

Query: 109 SFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGN 168
           S +QG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYDPH NTYN+GWRDNPNLRWGN
Sbjct: 63  SLLQGTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGN 122

Query: 169 DNQR 173
           DNQ+
Sbjct: 123 DNQK 126

[Close]

BLAST of PI0012858 vs. NCBI nr
Match: KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 33  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSL 92
           P  +Q+  +G ++ D    DAAA GALADKTP EARELI RM E SQNFGNRASELDNSL
Sbjct: 92  PSLIQYFYSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSL 151

Query: 93  TKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDP 152
           TKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E  N++R+YDP
Sbjct: 152 TKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDP 211

Query: 153 HSNTYNAGWRDNPNLRWGNDNQR 173
           H NTYN GWRDNPNLRWGNDNQ+
Sbjct: 212 HGNTYNLGWRDNPNLRWGNDNQK 234

The following BLAST results are available for this feature:

BLAST of PI0012858 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012858 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0Q7	1.1e-53	75.52	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CRR8	2.4e-53	83.06	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CB46	4.0e-53	83.87	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3D815	4.0e-53	83.06	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SQH8	6.9e-53	74.83	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0012858 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061138.1	2.2e-53	75.52	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0047407.1	4.9e-53	83.06	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
TYK07549.1	8.3e-53	83.87	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK19600.1	8.3e-53	83.06	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0032798.1	1.4e-52	74.83	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos...	[more]

BLAST of PI0012858 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012858.1	PI0012858.1	mRNA