PI0012568 (gene) Melon (PI 482460) v1

Overview


Name	PI0012568
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr12: 19829250 .. 19830636 (+)
RNA-Seq Expression	PI0012568
Synteny	PI0012568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGGGTAGAATTTTCTGGATTGGCTGATGATGCCAACGAGGAAATTATCACAAGATATGCACGAACATATATTTTACAGTTGATGGGTGGGAGTATGTTTTCAGATAAGTCAACTCGTTTTGTGCACCTAATATTCCTTCCGCCCTTAGCTAATCTGCACGAAATGGGGCGATATTCTTGGGGTGGAGCCTGTTTGGCATGGTTGTATAGACAGTTATGCAAAACAGCAAAACAAGGCATTTGTGAAATTGTTGGACCATTAATACTGTTACAAATATGGGCTTGGGAACGATTCCTAATAGTGGCTCCACAACTCCTGCATGTCAATGATCATCAATTACATTGACAAACTTATGGTTCAAGGTATGTTATTTTAATTTAATTTAGATTAACCATAATTTTTTATACGTAATACATTTAAAATCTAAAATATTAGTTGAACAATACAGATGGAGAGATCAATTTTGTGTGACCAAGTCGGCTACACATATAGTCTCTCAATATAAGTACATGTTTGCTCTTCTTCAAACTGATCAGATACGTTGTGTTGAACTTGAATTTTAAGTTACATATTATTTGTTTCATATAATATGTTGTGTTTCAGATTATCTAGAAGCCGTAAAAACTGTCATGGATAGTTTGCCGAATTTCTGTACAAACAGTCACGACATATGGCAGACGGTTAGTCCTCTTATATGTTTTCACATCAGTGAGTGGCATCATTCTAACAAAACACCCAGACAGTTTAGTATTAAATAAGATGTTCCACTTGATTGTAATACTGAACCACTTTTGTACAACGTTGACCTGAGAACGGCTGATTGGTCCGATAGAGTTGTCCATTTGGTGATGTGATTGCTAAATCGCAGAAAATTTATTGCTATGTGACCTCCGATTGGGCAATTTGATATGGATGTAACTCGAGAATACATCAATTGGCACAAAAATATTACCAGGCTCTATATCACTCGACCGACAGCTGTTGTGGGTCATCTAGTACATATTTAAATATTGTCTAATTATTTTTAGTACAAATTTATTTTGAATAGTTTCTAATTCATTTTAATATTTCACAGAGGTTGAACAACAGTAGACTTCAGGATGTTGCAGATGATCCACAACAAGTCCTAGACATATGCAACAGTAACGAGTGGTACATGGAGAATATACACTATATGTACGATGTACGTATTGTACCTACACCAATTCAAAGGAGACATGCTCGAGTGCAAGAGCCTAATGAATTGAAAGAAGTTGAACAACACGTTGAAGAAATGCCTCCTGTGAGACAAACACAGAACGAGACCGGTGATGTTAGTCTAATGATGATAATGCCGACATTTGGAATGGGATATTATATTCAGGAGTCAGTCAATCCTTAG

mRNA sequence

ATGGTTGGGGTAGAATTTTCTGGATTGGCTGATGATGCCAACGAGGAAATTATCACAAGATATGCACGAACATATATTTTACAGTTGATGGGTGGGAATTATCTAGAAGCCGTAAAAACTGTCATGGATAGTTTGCCGAATTTCTGTACAAACAGTCACGACATATGGCAGACGAGGTTGAACAACAGTAGACTTCAGGATGTTGCAGATGATCCACAACAAGTCCTAGACATATGCAACAGTAACGAGTGGTACATGGAGAATATACACTATATGTACGATGTACGTATTGTACCTACACCAATTCAAAGGAGACATGCTCGAGTGCAAGAGCCTAATGAATTGAAAGAAGTTGAACAACACGTTGAAGAAATGCCTCCTGTGAGACAAACACAGAACGAGACCGGTGATGTTAGTCTAATGATGATAATGCCGACATTTGGAATGGGATATTATATTCAGGAGTCAGTCAATCCTTAG

Coding sequence (CDS)

ATGGTTGGGGTAGAATTTTCTGGATTGGCTGATGATGCCAACGAGGAAATTATCACAAGATATGCACGAACATATATTTTACAGTTGATGGGTGGGAATTATCTAGAAGCCGTAAAAACTGTCATGGATAGTTTGCCGAATTTCTGTACAAACAGTCACGACATATGGCAGACGAGGTTGAACAACAGTAGACTTCAGGATGTTGCAGATGATCCACAACAAGTCCTAGACATATGCAACAGTAACGAGTGGTACATGGAGAATATACACTATATGTACGATGTACGTATTGTACCTACACCAATTCAAAGGAGACATGCTCGAGTGCAAGAGCCTAATGAATTGAAAGAAGTTGAACAACACGTTGAAGAAATGCCTCCTGTGAGACAAACACAGAACGAGACCGGTGATGTTAGTCTAATGATGATAATGCCGACATTTGGAATGGGATATTATATTCAGGAGTCAGTCAATCCTTAG

Protein sequence

MVGVEFSGLADDANEEIITRYARTYILQLMGGNYLEAVKTVMDSLPNFCTNSHDIWQTRLNNSRLQDVADDPQQVLDICNSNEWYMENIHYMYDVRIVPTPIQRRHARVQEPNELKEVEQHVEEMPPVRQTQNETGDVSLMMIMPTFGMGYYIQESVNP

Homology

[Close]

BLAST of PI0012568 vs. ExPASy TrEMBL
Match: A0A5D3CXW3 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001760 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.5e-34
Identity = 92/203 (45.32%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 2   VGVEFSGLADDANEEIITRYARTYILQLMG---------------GNYL----------E 61
           +G EFSGLA DAN+E ITRYAR YILQLMG                 Y+          E
Sbjct: 379 LGAEFSGLAGDANKETITRYARAYILQLMGWIMQGIQTRSATHVVSQYMYMFDLLQLSQE 438

Query: 62  AVKTVMDSLPNFCTNSHDIWQT-------------------------------------- 121
           + K V+DSLP+FCTN HDIW+T                                      
Sbjct: 439 SYKVVIDSLPHFCTNGHDIWRTISHLICFYISEWHHPDRVLRQFDRVIHLVMRWLNLRRF 498

Query: 122 -------------RLNNSRLQDVADDPQQVLDICNSNEWYMENIHYMYDVRIVPTPIQRR 129
                        R NNSRL++V DD QQVL+ICN+NE YMENIHYMYDV IVPTP+QRR
Sbjct: 499 IATGPSVEQFNMDRSNNSRLRNVEDDRQQVLNICNNNEQYMENIHYMYDVPIVPTPVQRR 558

[Close]

BLAST of PI0012568 vs. ExPASy TrEMBL
Match: A0A5A7U115 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold199G00010 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 100/260 (38.46%), Postives = 120/260 (46.15%), Query Frame = 0


Query: 2   VGVEFSGLADDANEEIITRYARTYILQLMGGNYL----------EAVKTVMDSLPNFCTN 61
           +G EF  LA+DA+EE ITRYAR YILQLMGG+            E  KTV+DSLP+FCTN
Sbjct: 545 LGAEFHELANDADEETITRYARAYILQLMGGSIFADKSTRYIVWEPYKTVIDSLPHFCTN 604

Query: 62  SHDIWQT------------------------------------RLNNSRLQ--------- 121
            HDIW+T                                     L+N  L+         
Sbjct: 605 GHDIWRTISPLICFYIGEWHHPDRVLRQFSIQQVVPRDCNTEPLLHNIDLRSSDWSDRVA 664

Query: 122 ----------------------------------------------------DVADDPQQ 153
                                                               +VADDPQQ
Sbjct: 665 YLVMQWHNRRRFTTTEPPIEQFDMYVTQEYIHWYKNITKLYITQLGAAMSHLNVADDPQQ 724

[Close]

BLAST of PI0012568 vs. ExPASy TrEMBL
Match: A0A5D3CIZ8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00630 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-31
Identity = 99/260 (38.08%), Postives = 121/260 (46.54%), Query Frame = 0


Query: 2   VGVEFSGLADDANEEIITRYARTYILQLMGGNYL----------EAVKTVMDSLPNFCTN 61
           +GVEF  LA+DA+EE ITRYAR YILQLMGG+            E  KTV+DSLP+FCTN
Sbjct: 452 LGVEFHELANDADEETITRYARAYILQLMGGSIFADKSTRYIVWEPYKTVIDSLPHFCTN 511

Query: 62  SHDIWQT----------------------------------------------------- 121
            HDIW+T                                                     
Sbjct: 512 GHDIWRTISPLICFYIGERHHPHRVLRQFGIQQAVPRDCNTEPLVHNIDLRTADWSDRVA 571

Query: 122 ----RLNNSRL----------------------------------------QDVADDPQQ 153
               R +N R                                          +VADDPQQ
Sbjct: 572 HLVMRWHNRRRFTATGPPIEQFDMYVTQEYIHWYKNITKLYITQLGAAMSHLNVADDPQQ 631

[Close]

BLAST of PI0012568 vs. ExPASy TrEMBL
Match: A0A5D3C1B6 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00380 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 59  RLNNSRLQDVADDPQQVLDICNSNEWYMENIHYMYDVRIVPTPIQRRHARVQEPNELKEV 118
           R NNSRLQ+VADDPQ VL+ICN NE  +ENIHYMYDV IVP P+QRRHA VQE ++L+EV
Sbjct: 66  RSNNSRLQNVADDPQHVLNICNDNEQSIENIHYMYDVPIVPAPVQRRHALVQELDQLEEV 125

Query: 119 EQHVEEMPPVRQTQNETGDVSLMMIMPTFGMGYY 153
           +QHVEE+PPV QTQ++ G VS +M+MPTFGM YY
Sbjct: 126 DQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTYY 159

[Close]

BLAST of PI0012568 vs. ExPASy TrEMBL
Match: A0A5A7TYT2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00520 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 59  RLNNSRLQDVADDPQQVLDICNSNEWYMENIHYMYDVRIVPTPIQRRHARVQEPNELKEV 118
           R NNSRLQ+VADDPQ VL+ICN NE  +ENIHYMYDV IVP P+QRRHA VQE ++L+EV
Sbjct: 249 RSNNSRLQNVADDPQHVLNICNDNEQSIENIHYMYDVPIVPAPVQRRHALVQELDQLEEV 308

Query: 119 EQHVEEMPPVRQTQNETGDVSLMMIMPTFGMGYY 153
           +QHVEE+PPV QTQ++ G VS +M+MPTFGM YY
Sbjct: 309 DQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTYY 342

[Close]

BLAST of PI0012568 vs. NCBI nr
Match: TYK16382.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-33
Identity = 92/203 (45.32%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 2   VGVEFSGLADDANEEIITRYARTYILQLMG---------------GNYL----------E 61
           +G EFSGLA DAN+E ITRYAR YILQLMG                 Y+          E
Sbjct: 379 LGAEFSGLAGDANKETITRYARAYILQLMGWIMQGIQTRSATHVVSQYMYMFDLLQLSQE 438

Query: 62  AVKTVMDSLPNFCTNSHDIWQT-------------------------------------- 121
           + K V+DSLP+FCTN HDIW+T                                      
Sbjct: 439 SYKVVIDSLPHFCTNGHDIWRTISHLICFYISEWHHPDRVLRQFDRVIHLVMRWLNLRRF 498

Query: 122 -------------RLNNSRLQDVADDPQQVLDICNSNEWYMENIHYMYDVRIVPTPIQRR 129
                        R NNSRL++V DD QQVL+ICN+NE YMENIHYMYDV IVPTP+QRR
Sbjct: 499 IATGPSVEQFNMDRSNNSRLRNVEDDRQQVLNICNNNEQYMENIHYMYDVPIVPTPVQRR 558

[Close]

BLAST of PI0012568 vs. NCBI nr
Match: KAA0047926.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 3.7e-31
Identity = 100/260 (38.46%), Postives = 120/260 (46.15%), Query Frame = 0


Query: 2   VGVEFSGLADDANEEIITRYARTYILQLMGGNYL----------EAVKTVMDSLPNFCTN 61
           +G EF  LA+DA+EE ITRYAR YILQLMGG+            E  KTV+DSLP+FCTN
Sbjct: 545 LGAEFHELANDADEETITRYARAYILQLMGGSIFADKSTRYIVWEPYKTVIDSLPHFCTN 604

Query: 62  SHDIWQT------------------------------------RLNNSRLQ--------- 121
            HDIW+T                                     L+N  L+         
Sbjct: 605 GHDIWRTISPLICFYIGEWHHPDRVLRQFSIQQVVPRDCNTEPLLHNIDLRSSDWSDRVA 664

Query: 122 ----------------------------------------------------DVADDPQQ 153
                                                               +VADDPQQ
Sbjct: 665 YLVMQWHNRRRFTTTEPPIEQFDMYVTQEYIHWYKNITKLYITQLGAAMSHLNVADDPQQ 724

[Close]

BLAST of PI0012568 vs. NCBI nr
Match: TYK11154.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 6.3e-31
Identity = 99/260 (38.08%), Postives = 121/260 (46.54%), Query Frame = 0


Query: 2   VGVEFSGLADDANEEIITRYARTYILQLMGGNYL----------EAVKTVMDSLPNFCTN 61
           +GVEF  LA+DA+EE ITRYAR YILQLMGG+            E  KTV+DSLP+FCTN
Sbjct: 452 LGVEFHELANDADEETITRYARAYILQLMGGSIFADKSTRYIVWEPYKTVIDSLPHFCTN 511

Query: 62  SHDIWQT----------------------------------------------------- 121
            HDIW+T                                                     
Sbjct: 512 GHDIWRTISPLICFYIGERHHPHRVLRQFGIQQAVPRDCNTEPLVHNIDLRTADWSDRVA 571

Query: 122 ----RLNNSRL----------------------------------------QDVADDPQQ 153
               R +N R                                          +VADDPQQ
Sbjct: 572 HLVMRWHNRRRFTATGPPIEQFDMYVTQEYIHWYKNITKLYITQLGAAMSHLNVADDPQQ 631

[Close]

BLAST of PI0012568 vs. NCBI nr
Match: KAA0047087.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-28
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 59  RLNNSRLQDVADDPQQVLDICNSNEWYMENIHYMYDVRIVPTPIQRRHARVQEPNELKEV 118
           R NNSRLQ+VADDPQ VL+ICN NE  +ENIHYMYDV IVP P+QRRHA VQE ++L+EV
Sbjct: 249 RSNNSRLQNVADDPQHVLNICNDNEQSIENIHYMYDVPIVPAPVQRRHALVQELDQLEEV 308

Query: 119 EQHVEEMPPVRQTQNETGDVSLMMIMPTFGMGYY 153
           +QHVEE+PPV QTQ++ G VS +M+MPTFGM YY
Sbjct: 309 DQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTYY 342

[Close]

BLAST of PI0012568 vs. NCBI nr
Match: TYK05068.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-28
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 59  RLNNSRLQDVADDPQQVLDICNSNEWYMENIHYMYDVRIVPTPIQRRHARVQEPNELKEV 118
           R NNSRLQ+VADDPQ VL+ICN NE  +ENIHYMYDV IVP P+QRRHA VQE ++L+EV
Sbjct: 66  RSNNSRLQNVADDPQHVLNICNDNEQSIENIHYMYDVPIVPAPVQRRHALVQELDQLEEV 125

Query: 119 EQHVEEMPPVRQTQNETGDVSLMMIMPTFGMGYY 153
           +QHVEE+PPV QTQ++ G VS +M+MPTFGM YY
Sbjct: 126 DQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTYY 159

The following BLAST results are available for this feature:

BLAST of PI0012568 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXW3	8.5e-34	45.32	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7U115	1.8e-31	38.46	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CIZ8	3.0e-31	38.08	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3C1B6	1.1e-28	71.28	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7TYT2	1.1e-28	71.28	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of PI0012568 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16382.1	1.8e-33	45.32	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0047926.1	3.7e-31	38.46	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK11154.1	6.3e-31	38.08	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0047087.1	2.2e-28	71.28	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK05068.1	2.2e-28	71.28	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of PI0012568 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012568.1	PI0012568.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding