Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA
mRNA sequence
ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA
Coding sequence (CDS)
ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA
Protein sequence
MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
Homology
BLAST of PI0012462 vs. ExPASy TrEMBL
Match:
A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
M PDDIM R R S+ R GSSGSKRK+GGQ +E+ +IIRSAMEY N QLK IAE
Sbjct: 48 MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAE 102
BLAST of PI0012462 vs. ExPASy TrEMBL
Match:
A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
MSPDD+M R+ R+S+ R SSGSKRKR G A ++ I+R+AMEY N+QL IAE
Sbjct: 151 MSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAE 205
BLAST of PI0012462 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
M DDIM R R ++ R GSSGSKRK+GGQA+E +IIR+ ME++ND+LK I E
Sbjct: 42 MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVE 96
BLAST of PI0012462 vs. ExPASy TrEMBL
Match:
A0A5D3C2D3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00220 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
MSPD++M R+ +SK R SSGSKRKRGGQA+++ IIR+A+EY N+QL IA+
Sbjct: 87 MSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAK 141
BLAST of PI0012462 vs. ExPASy TrEMBL
Match:
A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
MSP++IM + S+ + S+G KRKRGGQA+E A+IIR+A EYANDQLK IAE
Sbjct: 1 MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAE 55
BLAST of PI0012462 vs. NCBI nr
Match:
KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 67.4 bits (163), Expect = 4.4e-08
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
M PDDIM R R S+ R GSSGSKRK+GGQ +E+ +IIRSAMEY N QLK IAE
Sbjct: 48 MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAE 102
BLAST of PI0012462 vs. NCBI nr
Match:
KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
MSPDD+M R+ R+S+ R SSGSKRKR G A ++ I+R+AMEY N+QL IAE
Sbjct: 151 MSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAE 205
BLAST of PI0012462 vs. NCBI nr
Match:
KAA0052248.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 60.1 bits (144), Expect = 7.0e-06
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
MSPD++M R+VR+SK+R SSGSKRKR GQA ++ ++IR+A+E+ N+QL IA+
Sbjct: 178 MSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQLNRIAD 232
BLAST of PI0012462 vs. NCBI nr
Match:
KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])
HSP 1 Score: 60.1 bits (144), Expect = 7.0e-06
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
MSP++IM + S+ + S+G KRKRGGQA+E A+IIR+A EYANDQLK IAE
Sbjct: 1 MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAE 55
BLAST of PI0012462 vs. NCBI nr
Match:
KAA0063768.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 60.1 bits (144), Expect = 7.0e-06
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 0
Query: 1 MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
MSPD++M R+ +SK R SSGSKRKRGGQA+++ IIR+A+EY N+QL IA+
Sbjct: 87 MSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAK 141
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V3C0 | 2.1e-08 | 67.27 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TYQ6 | 2.0e-06 | 58.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7V469 | 3.4e-06 | 58.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3C2D3 | 3.4e-06 | 58.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7T0C2 | 3.4e-06 | 60.00 | RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060365.1 | 4.4e-08 | 67.27 | retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p... | [more] |
KAA0048280.1 | 4.1e-06 | 58.18 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0052248.1 | 7.0e-06 | 56.36 | retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon p... | [more] |
KAA0036810.1 | 7.0e-06 | 60.00 | RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 fing... | [more] |
KAA0063768.1 | 7.0e-06 | 58.18 | retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |