PI0012462 (gene) Melon (PI 482460) v1

Overview
NamePI0012462
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr10: 13735217 .. 13735384 (+)
RNA-Seq ExpressionPI0012462
SyntenyPI0012462
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA

mRNA sequence

ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA

Coding sequence (CDS)

ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA

Protein sequence

MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
Homology
BLAST of PI0012462 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 1   MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
           M PDDIM  R  R S+ R GSSGSKRK+GGQ +E+ +IIRSAMEY N QLK IAE
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAE 102

BLAST of PI0012462 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1   MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
           MSPDD+M  R+ R+S+ R  SSGSKRKR G A ++  I+R+AMEY N+QL  IAE
Sbjct: 151 MSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAE 205

BLAST of PI0012462 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
          M  DDIM  R  R ++ R GSSGSKRK+GGQA+E  +IIR+ ME++ND+LK I E
Sbjct: 42 MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVE 96

BLAST of PI0012462 vs. ExPASy TrEMBL
Match: A0A5D3C2D3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00220 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
           MSPD++M  R+  +SK R  SSGSKRKRGGQA+++  IIR+A+EY N+QL  IA+
Sbjct: 87  MSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAK 141

BLAST of PI0012462 vs. ExPASy TrEMBL
Match: A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 1  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
          MSP++IM  +    S+ +  S+G KRKRGGQA+E A+IIR+A EYANDQLK IAE
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAE 55

BLAST of PI0012462 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 4.4e-08
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 1   MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
           M PDDIM  R  R S+ R GSSGSKRK+GGQ +E+ +IIRSAMEY N QLK IAE
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAE 102

BLAST of PI0012462 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1   MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
           MSPDD+M  R+ R+S+ R  SSGSKRKR G A ++  I+R+AMEY N+QL  IAE
Sbjct: 151 MSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAE 205

BLAST of PI0012462 vs. NCBI nr
Match: KAA0052248.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-06
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1   MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
           MSPD++M  R+VR+SK+R  SSGSKRKR GQA ++ ++IR+A+E+ N+QL  IA+
Sbjct: 178 MSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQLNRIAD 232

BLAST of PI0012462 vs. NCBI nr
Match: KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-06
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 1  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
          MSP++IM  +    S+ +  S+G KRKRGGQA+E A+IIR+A EYANDQLK IAE
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAE 55

BLAST of PI0012462 vs. NCBI nr
Match: KAA0063768.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-06
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE 56
           MSPD++M  R+  +SK R  SSGSKRKRGGQA+++  IIR+A+EY N+QL  IA+
Sbjct: 87  MSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAK 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V3C02.1e-0867.27Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TYQ62.0e-0658.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V4693.4e-0658.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C2D33.4e-0658.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T0C23.4e-0660.00RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
Match NameE-valueIdentityDescription
KAA0060365.14.4e-0867.27retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p... [more]
KAA0048280.14.1e-0658.18retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052248.17.0e-0656.36retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon p... [more]
KAA0036810.17.0e-0660.00RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 fing... [more]
KAA0063768.17.0e-0658.18retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012462.1PI0012462.1mRNA