PI0012168 (gene) Melon (PI 482460) v1

Overview


Name	PI0012168
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	60S ribosomal protein L36
Location	chr03: 11189893 .. 11190781 (+)
RNA-Seq Expression	PI0012168
Synteny	PI0012168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTTCAGACTCCTTATTCAATGGCACAACGAAGGGTAAAGCTTAGTCTTCTTAAACGGAGAATGAAAGAGAACTCTGCACCTAGAATGTGAAAGGGAACTACTTAAGTCAAATTCTTTGAACCTCAACATCTAATCCCGCCGACCCTACATTCTTTGCGAGGGTCTTGACCATAGGCATATAACCATTTTACATATCAAACAAACTGGAACATCCTTCTTTTGGATCATTTGTTTCTTTCAGTTTTTCAAGTCGTTGGTGGGTAGTAGTAATTGACTTGAATGGTTAATTAATGATTGTTTGAATTTGATTGTTAACATAGAAAAGTAGCAAAAGAGTTCTCTTTGTGAGGAATTTAATCTGGAAAGTTGTTGGTTTTGCCCCCATAAAAGAAGAGAATCACTAAGCTTCTTAAAGTTGTAAAGGACAAGAGAGCACTAAAAGTGACTAAGAGAAAGTTGAAAACTCACAACAGAGGTAAGAAGAAGAAAGAAGAGACGTCCAACCTTACGGCTTATTTGTAAGTTTTTTAACAAGTTTGCATCATACAACAAAACATCTTAATTTTCTGAGCGATTGGAAAAATTGGTGATCTGTTATGCTAGAGTTCGCTTGGAAGAGAAAGATATGGCAGACAAGATGTTCATCATGGAGAATGTGGATGGAGCACTTTGCTGCCTTAAACGCTTACGAAGCTTAAGGAACTCTTTTGCCTCACCTTCGTCAAACATGCTCGAATTTCTAATTGATAACTATTTATATTTAGTTTTATATACAAAAATCCATTTGTTTTGTTTCTCTAAAGAATTTTCTGTATGATGTTGCATTGGGTATCTTCTTATAGGTGATGTGAACAAAGTACAAGCAATAAAAAGAATAGTTGA

mRNA sequence

ATGGAGACTTCAGACTCCTTATTCAATGGCACAACGAAGGGTAAAGCTTATAGCAAAAGAGTTCTCTTTGTGAGGAATTTAATCTGGAAAGTTCTTCTTAAAGTTGTAAAGGACAAGAGAGCACTAAAAGTGACTAAGAGAAAGTTGAAAACTCACAACAGAGGTAAGAAGAAGAAAGAAGAGACGTCCAACCTTACGGCTTATTTTACAAGCAATAAAAAGAATAGTTGA

Coding sequence (CDS)

ATGGAGACTTCAGACTCCTTATTCAATGGCACAACGAAGGGTAAAGCTTATAGCAAAAGAGTTCTCTTTGTGAGGAATTTAATCTGGAAAGTTCTTCTTAAAGTTGTAAAGGACAAGAGAGCACTAAAAGTGACTAAGAGAAAGTTGAAAACTCACAACAGAGGTAAGAAGAAGAAAGAAGAGACGTCCAACCTTACGGCTTATTTTACAAGCAATAAAAAGAATAGTTGA

Protein sequence

METSDSLFNGTTKGKAYSKRVLFVRNLIWKVLLKVVKDKRALKVTKRKLKTHNRGKKKKEETSNLTAYFTSNKKNS

Homology

[Close]

BLAST of PI0012168 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.9e-06
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+RNLI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 33 KGKT-SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 92

[Close]

BLAST of PI0012168 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.9e-06
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+RNLI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 29 KGKT-SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 88

[Close]

BLAST of PI0012168 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-05
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+R LI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 33 KGKT-SKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 92

[Close]

BLAST of PI0012168 vs. ExPASy TrEMBL
Match: A0A6J1IDA3 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111471531 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGKA SKRVLFVR+LI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKA-SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. ExPASy TrEMBL
Match: A0A6J1E2F7 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430179 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGKA SKRVLFVR+LI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKA-SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. ExPASy TrEMBL
Match: I1HT92 (60S ribosomal protein L36 OS=Brachypodium distachyon OX=15368 GN=100842116 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-05
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK+ +KRVLFVRNLI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKS-TKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. ExPASy TrEMBL
Match: A0A5N6LFM1 (60S ribosomal protein L36 OS=Mikania micrantha OX=192012 GN=E3N88_43164 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-05
Identity = 39/65 (60.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR  FVRNLIW+V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKT-SKRAHFVRNLIWEVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. ExPASy TrEMBL
Match: A0A7N2MG83 (60S ribosomal protein L36 OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-05
Identity = 41/64 (64.06%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 65
          KGK  SKRVLFVRNLI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKT-SKRVLFVRNLIREVAGLAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. NCBI nr
Match: XP_038888040.1 (60S ribosomal protein L36-3-like [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 6.3e-05
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 18  SKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKEETSNL 67
           SKRVLFVRNLIW+V            LLKV KDKR LKV KRKL TH R KKK+EE S++
Sbjct: 57  SKRVLFVRNLIWEVAGFAPYEKRITELLKVGKDKRTLKVAKRKLGTHKRAKKKREEMSSV 116

[Close]

BLAST of PI0012168 vs. NCBI nr
Match: XP_023907749.1 (60S ribosomal protein L36-2-like [Quercus suber] >XP_023907757.1 60S ribosomal protein L36-2-like [Quercus suber] >XP_023914879.1 60S ribosomal protein L36-2-like [Quercus suber] >XP_023914880.1 60S ribosomal protein L36-2-like [Quercus suber])

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKRVLFVRNLI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKT-SKRVLFVRNLIREVAGLAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. NCBI nr
Match: KAG6579388.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 13  KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
           KGKA SKRVLFVR+LI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 82  KGKA-SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 141

[Close]

BLAST of PI0012168 vs. NCBI nr
Match: XP_011008474.1 (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGKA SKRVLFVR+LI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKA-SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. NCBI nr
Match: XP_011008473.1 (PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGKA SKRVLFVR+LI +V            LLKV KDKRALKV KRKL TH R KKK+E
Sbjct: 33 KGKA-SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92

[Close]

BLAST of PI0012168 vs. TAIR 10
Match: AT3G53740.2 (Ribosomal protein L36e family protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+RNLI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 33 KGKT-SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 92

[Close]

BLAST of PI0012168 vs. TAIR 10
Match: AT3G53740.3 (Ribosomal protein L36e family protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+RNLI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 33 KGKT-SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 92

[Close]

BLAST of PI0012168 vs. TAIR 10
Match: AT3G53740.4 (Ribosomal protein L36e family protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+RNLI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 33 KGKT-SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 92

[Close]

BLAST of PI0012168 vs. TAIR 10
Match: AT5G02450.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+RNLI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 29 KGKT-SKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 88

[Close]

BLAST of PI0012168 vs. TAIR 10
Match: AT2G37600.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 13 KGKAYSKRVLFVRNLIWKV------------LLKVVKDKRALKVTKRKLKTHNRGKKKKE 66
          KGK  SKR +F+R LI +V            LLKV KDKRALKV KRKL TH R K+K+E
Sbjct: 33 KGKT-SKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 92

The following BLAST results are available for this feature:

BLAST of PI0012168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M352	5.9e-06	55.38	60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1	[more]
Q9LZ57	5.9e-06	55.38	60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1	[more]
O80929	2.9e-05	53.85	60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1	[more]

BLAST of PI0012168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDA3	5.2e-05	63.08	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111471531 PE=3 SV=1	[more]
A0A6J1E2F7	5.2e-05	63.08	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430179 PE=3 SV=...	[more]
I1HT92	6.8e-05	61.54	60S ribosomal protein L36 OS=Brachypodium distachyon OX=15368 GN=100842116 PE=3 ...	[more]
A0A5N6LFM1	6.8e-05	60.00	60S ribosomal protein L36 OS=Mikania micrantha OX=192012 GN=E3N88_43164 PE=3 SV=...	[more]
A0A7N2MG83	6.8e-05	64.06	60S ribosomal protein L36 OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of PI0012168 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888040.1	6.3e-05	60.66	60S ribosomal protein L36-3-like [Benincasa hispida]	[more]
XP_023907749.1	8.2e-05	63.08	60S ribosomal protein L36-2-like [Quercus suber] >XP_023907757.1 60S ribosomal p...	[more]
KAG6579388.1	1.1e-04	63.08	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011008474.1	1.1e-04	63.08	PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica]	[more]
XP_011008473.1	1.1e-04	63.08	PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica]	[more]

BLAST of PI0012168 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53740.2	4.2e-07	55.38	Ribosomal protein L36e family protein	[more]
AT3G53740.3	4.2e-07	55.38	Ribosomal protein L36e family protein	[more]
AT3G53740.4	4.2e-07	55.38	Ribosomal protein L36e family protein	[more]
AT5G02450.1	4.2e-07	55.38	Ribosomal protein L36e family protein	[more]
AT2G37600.1	2.1e-06	53.85	Ribosomal protein L36e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000509	Ribosomal protein L36e	PFAM	PF01158	Ribosomal_L36e	coord: 31..67 e-value: 1.5E-8 score: 34.7
IPR038097	Ribosomal protein L36e domain superfamily	GENE3D	1.10.10.1760	60S ribosomal protein L36	coord: 18..75 e-value: 3.0E-8 score: 35.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012168.1	PI0012168.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome