Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTACCCACGATAGAGAGGTCAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGCGACCTCTGAAGAAAGCAAAGGCATCGAGCGATGATTCATGTGGAAGAGGTTCAACTGCGATGGAAATTCCTAACGTTCCAACACCATTGGTTTGCATATTTTCTTCCCTTATATGCATTTTTAAAAATTTTATTTTAAAATTCCCTTTTCTTTGGCTAATTTATTTATTACTTATTTCTACAGTCACCTTTGGACGGTCATCTTCAAGGACTTATAGAGATATGTAGTGATGATTCTCTGACAGGGCCCCATGCCGTGGATTCGACCCTTGAAGGAGTTGGTACTTCAAAAACACCAGTTGCCAGGCCGGCTGAACAACCCTCACGTCCTCCTGCTCTTCTCGAAGAGATTCGTCGGGACAAGATGAAGGTGAATGAAAAATATATTAAAAAATCAAATCCTTCGTCCCAAGAACCCGCAGCGCCTTTAGAGAAGGTCGAATCCACACATGCGTCTCTCAGGATTTCTGAGCCGCCTTTAGACACTTCGAGAAAGCAGATAGTAGGACCTGCTGAGCCCTCGCAGTGGGTTGGTGAAAAGGTAGTGTCAAACTTCTTTCAGAAAACGGCCTTATGCATGTGGGAAGACATTCGAGACAAGATCATGCGCACTCCTTTTGAATATATCCCAAGGCTTAGGCCGGAAATAGCAACGGTTCTTTCAGGCATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTGA
mRNA sequence
ATGGCTCCTACCCACGATAGAGAGGTCAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGCGACCTCTGAAGAAAGCAAAGGCATCGAGCGATGATTCATTTGGTACTTCAAAAACACCAGTTGCCAGGCCGGCTGAACAACCCTCACGTCCTCCTGCTCTTCTCGAAGAGATTCGTCGGGACAAGATGAAGGTGAATGAAAAATATATTAAAAAATCAAATCCTTCGTCCCAAGAACCCGCAGCGCCTTTAGAGAAGGTCGAATCCACACATGCGTCTCTCAGGATTTCTGAGCCGCCTTTAGACACTTCGAGAAAGCAGATAGTAGGACCTGCTGAGCCCTCGCTTAGGCCGGAAATAGCAACGGTTCTTTCAGGCATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTGA
Coding sequence (CDS)
ATGGCTCCTACCCACGATAGAGAGGTCAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGCGACCTCTGAAGAAAGCAAAGGCATCGAGCGATGATTCATTTGGTACTTCAAAAACACCAGTTGCCAGGCCGGCTGAACAACCCTCACGTCCTCCTGCTCTTCTCGAAGAGATTCGTCGGGACAAGATGAAGGTGAATGAAAAATATATTAAAAAATCAAATCCTTCGTCCCAAGAACCCGCAGCGCCTTTAGAGAAGGTCGAATCCACACATGCGTCTCTCAGGATTTCTGAGCCGCCTTTAGACACTTCGAGAAAGCAGATAGTAGGACCTGCTGAGCCCTCGCTTAGGCCGGAAATAGCAACGGTTCTTTCAGGCATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTGA
Protein sequence
MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNEKYIKKSNPSSQEPAAPLEKVESTHASLRISEPPLDTSRKQIVGPAEPSLRPEIATVLSGIAKIQADNLTPLEEY
Homology
BLAST of PI0011977 vs. ExPASy TrEMBL
Match:
A0A0A0KQU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 84/150 (56.00%), Postives = 103/150 (68.67%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSKTPVARPAEQPSRPPAL 60
MAPT +++V EH+++SD+++SDRHWKRPLKKA KTP A+P + RP AL
Sbjct: 1 MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKA-----------KTPAAKPVKVSLRPSAL 60
Query: 61 LEEIRRDKMKVNEKYIKKSNPSSQEPAAPL---EKVESTHASLRISEPPLDTSRKQIVGP 120
LEEIRR KMKV K I+ N S+ A P+ K S HA L+ISEPPL TS KQ
Sbjct: 61 LEEIRRGKMKVGGKDIE--NLPSRGGAYPIVSSMKATSMHAPLKISEPPLGTSMKQAAEH 120
Query: 121 AEPSLRPEIATVLSGIAKIQADNLTPLEEY 148
+PSLR EI+T+LSGIAKI AD+LTPLEEY
Sbjct: 121 PKPSLRLEISTILSGIAKIHADDLTPLEEY 137
BLAST of PI0011977 vs. ExPASy TrEMBL
Match:
A0A5D3BT42 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00370 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 93/195 (47.69%), Postives = 102/195 (52.31%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDD----------SFGTSKTPVARP 60
MA T + EV EH+EQSDSS+SD HWKR LKKAK S DD T KTPV+RP
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236
Query: 61 AEQPSRPPALLEEIRRDKMKVNEKYI-KKSNPSSQEPAAPLEKVESTHASLRISEPPLDT 120
AEQ RP AL EEI R KM V K I + P APL+K+ STHA LR SE PLDT
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296
Query: 121 SRKQIVGPAEPS-------------------------------------LRPEIATVLSG 148
S +Q PS LRP+IATVLSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356
BLAST of PI0011977 vs. ExPASy TrEMBL
Match:
A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 95/212 (44.81%), Postives = 108/212 (50.94%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
MAP + EVKEH+++SDSS+SDRHWKRPLKKAK S D
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685
Query: 61 ----DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNEKYIKK-SNPSSQEPAAPLEK 120
+ GTSKTPV +PAEQ RP AL EEIRR KM V K ++ S+ P A L K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745
Query: 121 VESTHASLRISEPPLDTSRKQIVGPAEPS------------------------------- 148
V STHA L+ SE PL TS KQ + +EPS
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805
BLAST of PI0011977 vs. ExPASy TrEMBL
Match:
A0A5A7U6Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3608G00010 PE=4 SV=1)
HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 86/157 (54.78%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 6 DREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSK-----------TPVARPAEQP 65
+ E+KEH+++S+S +SDRHWKRPLKKAK SSDD G TPV++PA+Q
Sbjct: 6 EEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSKPAKQS 65
Query: 66 SRPPALLEEIRRDKMKVNEKYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSR 125
RP LLEEIRR KM V K I +PSS+ P APL+KV ST A L+ SE LDTS
Sbjct: 66 LRPSTLLEEIRRGKMIVVGKDI--GSPSSKGDACPKAPLQKVNSTPAPLKFSESFLDTSN 125
Query: 126 KQIVGPAEPS-LRPEIATVLSGIAKIQADNLTPLEEY 148
+Q EPS LR EI TVLS I KI AD L PLEEY
Sbjct: 126 RQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEY 160
BLAST of PI0011977 vs. ExPASy TrEMBL
Match:
A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 92/198 (46.46%), Postives = 106/198 (53.54%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
MAP + EV EH +SDS++SDRHWKRPLKKAK S D
Sbjct: 611 MAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 670
Query: 61 ------------------------DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNE 120
+ GTS+TPV +PAEQ RP LLEEIRR KM V
Sbjct: 671 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSTLLEEIRRGKMTVGG 730
Query: 121 KYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSRKQIVGPAEPS-LRPEIATV 148
K ++ +PSS+E P A L+KV S HA L+ SE PL S KQ + EPS LRPEIATV
Sbjct: 731 KDLE--SPSSKEGACPKASLQKVSSAHAPLKFSELPLGVSNKQTMRNPEPSQLRPEIATV 790
BLAST of PI0011977 vs. NCBI nr
Match:
KAE8648075.1 (hypothetical protein Csa_018860, partial [Cucumis sativus])
HSP 1 Score: 135.2 bits (339), Expect = 4.6e-28
Identity = 84/150 (56.00%), Postives = 103/150 (68.67%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSKTPVARPAEQPSRPPAL 60
MAPT +++V EH+++SD+++SDRHWKRPLKKA KTP A+P + RP AL
Sbjct: 1 MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKA-----------KTPAAKPVKVSLRPSAL 60
Query: 61 LEEIRRDKMKVNEKYIKKSNPSSQEPAAPL---EKVESTHASLRISEPPLDTSRKQIVGP 120
LEEIRR KMKV K I+ N S+ A P+ K S HA L+ISEPPL TS KQ
Sbjct: 61 LEEIRRGKMKVGGKDIE--NLPSRGGAYPIVSSMKATSMHAPLKISEPPLGTSMKQAAEH 120
Query: 121 AEPSLRPEIATVLSGIAKIQADNLTPLEEY 148
+PSLR EI+T+LSGIAKI AD+LTPLEEY
Sbjct: 121 PKPSLRLEISTILSGIAKIHADDLTPLEEY 137
BLAST of PI0011977 vs. NCBI nr
Match:
KAA0035005.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 131.7 bits (330), Expect = 5.1e-27
Identity = 93/195 (47.69%), Postives = 102/195 (52.31%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDD----------SFGTSKTPVARP 60
MA T + EV EH+EQSDSS+SD HWKR LKKAK S DD T KTPV+RP
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236
Query: 61 AEQPSRPPALLEEIRRDKMKVNEKYI-KKSNPSSQEPAAPLEKVESTHASLRISEPPLDT 120
AEQ RP AL EEI R KM V K I + P APL+K+ STHA LR SE PLDT
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296
Query: 121 SRKQIVGPAEPS-------------------------------------LRPEIATVLSG 148
S +Q PS LRP+IATVLSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356
BLAST of PI0011977 vs. NCBI nr
Match:
TYK06433.1 (hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa])
HSP 1 Score: 131.3 bits (329), Expect = 6.6e-27
Identity = 95/212 (44.81%), Postives = 108/212 (50.94%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
MAP + EVKEH+++SDSS+SDRHWKRPLKKAK S D
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685
Query: 61 ----DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNEKYIKK-SNPSSQEPAAPLEK 120
+ GTSKTPV +PAEQ RP AL EEIRR KM V K ++ S+ P A L K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745
Query: 121 VESTHASLRISEPPLDTSRKQIVGPAEPS------------------------------- 148
V STHA L+ SE PL TS KQ + +EPS
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805
BLAST of PI0011977 vs. NCBI nr
Match:
KAA0050984.1 (hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 125.9 bits (315), Expect = 2.8e-25
Identity = 86/157 (54.78%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 6 DREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSK-----------TPVARPAEQP 65
+ E+KEH+++S+S +SDRHWKRPLKKAK SSDD G TPV++PA+Q
Sbjct: 6 EEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSKPAKQS 65
Query: 66 SRPPALLEEIRRDKMKVNEKYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSR 125
RP LLEEIRR KM V K I +PSS+ P APL+KV ST A L+ SE LDTS
Sbjct: 66 LRPSTLLEEIRRGKMIVVGKDI--GSPSSKGDACPKAPLQKVNSTPAPLKFSESFLDTSN 125
Query: 126 KQIVGPAEPS-LRPEIATVLSGIAKIQADNLTPLEEY 148
+Q EPS LR EI TVLS I KI AD L PLEEY
Sbjct: 126 RQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEY 160
BLAST of PI0011977 vs. NCBI nr
Match:
KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])
HSP 1 Score: 125.2 bits (313), Expect = 4.8e-25
Identity = 92/198 (46.46%), Postives = 106/198 (53.54%), Query Frame = 0
Query: 1 MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
MAP + EV EH +SDS++SDRHWKRPLKKAK S D
Sbjct: 611 MAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 670
Query: 61 ------------------------DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNE 120
+ GTS+TPV +PAEQ RP LLEEIRR KM V
Sbjct: 671 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSTLLEEIRRGKMTVGG 730
Query: 121 KYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSRKQIVGPAEPS-LRPEIATV 148
K ++ +PSS+E P A L+KV S HA L+ SE PL S KQ + EPS LRPEIATV
Sbjct: 731 KDLE--SPSSKEGACPKASLQKVSSAHAPLKFSELPLGVSNKQTMRNPEPSQLRPEIATV 790
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KQU9 | 2.2e-28 | 56.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1 | [more] |
| A0A5D3BT42 | 2.5e-27 | 47.69 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5D3C3D7 | 3.2e-27 | 44.81 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5A7U6Q5 | 1.4e-25 | 54.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UGW6 | 2.3e-25 | 46.46 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8648075.1 | 4.6e-28 | 56.00 | hypothetical protein Csa_018860, partial [Cucumis sativus] | [more] |
| KAA0035005.1 | 5.1e-27 | 47.69 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative m... | [more] |
| TYK06433.1 | 6.6e-27 | 44.81 | hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa] | [more] |
| KAA0050984.1 | 2.8e-25 | 54.78 | hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa] | [more] |
| KAA0053466.1 | 4.8e-25 | 46.46 | hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
