PI0011977 (gene) Melon (PI 482460) v1

Overview
NamePI0011977
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionPMD domain-containing protein
Locationchr10: 4651968 .. 4652760 (+)
RNA-Seq ExpressionPI0011977
SyntenyPI0011977
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTACCCACGATAGAGAGGTCAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGCGACCTCTGAAGAAAGCAAAGGCATCGAGCGATGATTCATGTGGAAGAGGTTCAACTGCGATGGAAATTCCTAACGTTCCAACACCATTGGTTTGCATATTTTCTTCCCTTATATGCATTTTTAAAAATTTTATTTTAAAATTCCCTTTTCTTTGGCTAATTTATTTATTACTTATTTCTACAGTCACCTTTGGACGGTCATCTTCAAGGACTTATAGAGATATGTAGTGATGATTCTCTGACAGGGCCCCATGCCGTGGATTCGACCCTTGAAGGAGTTGGTACTTCAAAAACACCAGTTGCCAGGCCGGCTGAACAACCCTCACGTCCTCCTGCTCTTCTCGAAGAGATTCGTCGGGACAAGATGAAGGTGAATGAAAAATATATTAAAAAATCAAATCCTTCGTCCCAAGAACCCGCAGCGCCTTTAGAGAAGGTCGAATCCACACATGCGTCTCTCAGGATTTCTGAGCCGCCTTTAGACACTTCGAGAAAGCAGATAGTAGGACCTGCTGAGCCCTCGCAGTGGGTTGGTGAAAAGGTAGTGTCAAACTTCTTTCAGAAAACGGCCTTATGCATGTGGGAAGACATTCGAGACAAGATCATGCGCACTCCTTTTGAATATATCCCAAGGCTTAGGCCGGAAATAGCAACGGTTCTTTCAGGCATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTGA

mRNA sequence

ATGGCTCCTACCCACGATAGAGAGGTCAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGCGACCTCTGAAGAAAGCAAAGGCATCGAGCGATGATTCATTTGGTACTTCAAAAACACCAGTTGCCAGGCCGGCTGAACAACCCTCACGTCCTCCTGCTCTTCTCGAAGAGATTCGTCGGGACAAGATGAAGGTGAATGAAAAATATATTAAAAAATCAAATCCTTCGTCCCAAGAACCCGCAGCGCCTTTAGAGAAGGTCGAATCCACACATGCGTCTCTCAGGATTTCTGAGCCGCCTTTAGACACTTCGAGAAAGCAGATAGTAGGACCTGCTGAGCCCTCGCTTAGGCCGGAAATAGCAACGGTTCTTTCAGGCATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTGA

Coding sequence (CDS)

ATGGCTCCTACCCACGATAGAGAGGTCAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGCGACCTCTGAAGAAAGCAAAGGCATCGAGCGATGATTCATTTGGTACTTCAAAAACACCAGTTGCCAGGCCGGCTGAACAACCCTCACGTCCTCCTGCTCTTCTCGAAGAGATTCGTCGGGACAAGATGAAGGTGAATGAAAAATATATTAAAAAATCAAATCCTTCGTCCCAAGAACCCGCAGCGCCTTTAGAGAAGGTCGAATCCACACATGCGTCTCTCAGGATTTCTGAGCCGCCTTTAGACACTTCGAGAAAGCAGATAGTAGGACCTGCTGAGCCCTCGCTTAGGCCGGAAATAGCAACGGTTCTTTCAGGCATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTGA

Protein sequence

MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNEKYIKKSNPSSQEPAAPLEKVESTHASLRISEPPLDTSRKQIVGPAEPSLRPEIATVLSGIAKIQADNLTPLEEY
Homology
BLAST of PI0011977 vs. ExPASy TrEMBL
Match: A0A0A0KQU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 84/150 (56.00%), Postives = 103/150 (68.67%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSKTPVARPAEQPSRPPAL 60
           MAPT +++V EH+++SD+++SDRHWKRPLKKA           KTP A+P +   RP AL
Sbjct: 1   MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKA-----------KTPAAKPVKVSLRPSAL 60

Query: 61  LEEIRRDKMKVNEKYIKKSNPSSQEPAAPL---EKVESTHASLRISEPPLDTSRKQIVGP 120
           LEEIRR KMKV  K I+  N  S+  A P+    K  S HA L+ISEPPL TS KQ    
Sbjct: 61  LEEIRRGKMKVGGKDIE--NLPSRGGAYPIVSSMKATSMHAPLKISEPPLGTSMKQAAEH 120

Query: 121 AEPSLRPEIATVLSGIAKIQADNLTPLEEY 148
            +PSLR EI+T+LSGIAKI AD+LTPLEEY
Sbjct: 121 PKPSLRLEISTILSGIAKIHADDLTPLEEY 137

BLAST of PI0011977 vs. ExPASy TrEMBL
Match: A0A5D3BT42 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00370 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 93/195 (47.69%), Postives = 102/195 (52.31%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDD----------SFGTSKTPVARP 60
           MA T + EV EH+EQSDSS+SD HWKR LKKAK S DD             T KTPV+RP
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236

Query: 61  AEQPSRPPALLEEIRRDKMKVNEKYI-KKSNPSSQEPAAPLEKVESTHASLRISEPPLDT 120
           AEQ  RP AL EEI R KM V  K I    +     P APL+K+ STHA LR SE PLDT
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296

Query: 121 SRKQIVGPAEPS-------------------------------------LRPEIATVLSG 148
           S +Q      PS                                     LRP+IATVLSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356

BLAST of PI0011977 vs. ExPASy TrEMBL
Match: A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 95/212 (44.81%), Postives = 108/212 (50.94%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
           MAP  + EVKEH+++SDSS+SDRHWKRPLKKAK S D                       
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685

Query: 61  ----DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNEKYIKK-SNPSSQEPAAPLEK 120
               +  GTSKTPV +PAEQ  RP AL EEIRR KM V  K ++  S+     P A L K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745

Query: 121 VESTHASLRISEPPLDTSRKQIVGPAEPS------------------------------- 148
           V STHA L+ SE PL TS KQ +  +EPS                               
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805

BLAST of PI0011977 vs. ExPASy TrEMBL
Match: A0A5A7U6Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3608G00010 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 86/157 (54.78%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 6   DREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSK-----------TPVARPAEQP 65
           + E+KEH+++S+S +SDRHWKRPLKKAK SSDD  G              TPV++PA+Q 
Sbjct: 6   EEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSKPAKQS 65

Query: 66  SRPPALLEEIRRDKMKVNEKYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSR 125
            RP  LLEEIRR KM V  K I   +PSS+    P APL+KV ST A L+ SE  LDTS 
Sbjct: 66  LRPSTLLEEIRRGKMIVVGKDI--GSPSSKGDACPKAPLQKVNSTPAPLKFSESFLDTSN 125

Query: 126 KQIVGPAEPS-LRPEIATVLSGIAKIQADNLTPLEEY 148
           +Q     EPS LR EI TVLS I KI AD L PLEEY
Sbjct: 126 RQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEY 160

BLAST of PI0011977 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 92/198 (46.46%), Postives = 106/198 (53.54%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
           MAP  + EV EH  +SDS++SDRHWKRPLKKAK S D                       
Sbjct: 611 MAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 670

Query: 61  ------------------------DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNE 120
                                   +  GTS+TPV +PAEQ  RP  LLEEIRR KM V  
Sbjct: 671 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSTLLEEIRRGKMTVGG 730

Query: 121 KYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSRKQIVGPAEPS-LRPEIATV 148
           K ++  +PSS+E   P A L+KV S HA L+ SE PL  S KQ +   EPS LRPEIATV
Sbjct: 731 KDLE--SPSSKEGACPKASLQKVSSAHAPLKFSELPLGVSNKQTMRNPEPSQLRPEIATV 790

BLAST of PI0011977 vs. NCBI nr
Match: KAE8648075.1 (hypothetical protein Csa_018860, partial [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.6e-28
Identity = 84/150 (56.00%), Postives = 103/150 (68.67%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSKTPVARPAEQPSRPPAL 60
           MAPT +++V EH+++SD+++SDRHWKRPLKKA           KTP A+P +   RP AL
Sbjct: 1   MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKA-----------KTPAAKPVKVSLRPSAL 60

Query: 61  LEEIRRDKMKVNEKYIKKSNPSSQEPAAPL---EKVESTHASLRISEPPLDTSRKQIVGP 120
           LEEIRR KMKV  K I+  N  S+  A P+    K  S HA L+ISEPPL TS KQ    
Sbjct: 61  LEEIRRGKMKVGGKDIE--NLPSRGGAYPIVSSMKATSMHAPLKISEPPLGTSMKQAAEH 120

Query: 121 AEPSLRPEIATVLSGIAKIQADNLTPLEEY 148
            +PSLR EI+T+LSGIAKI AD+LTPLEEY
Sbjct: 121 PKPSLRLEISTILSGIAKIHADDLTPLEEY 137

BLAST of PI0011977 vs. NCBI nr
Match: KAA0035005.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 5.1e-27
Identity = 93/195 (47.69%), Postives = 102/195 (52.31%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSDD----------SFGTSKTPVARP 60
           MA T + EV EH+EQSDSS+SD HWKR LKKAK S DD             T KTPV+RP
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236

Query: 61  AEQPSRPPALLEEIRRDKMKVNEKYI-KKSNPSSQEPAAPLEKVESTHASLRISEPPLDT 120
           AEQ  RP AL EEI R KM V  K I    +     P APL+K+ STHA LR SE PLDT
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296

Query: 121 SRKQIVGPAEPS-------------------------------------LRPEIATVLSG 148
           S +Q      PS                                     LRP+IATVLSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356

BLAST of PI0011977 vs. NCBI nr
Match: TYK06433.1 (hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-27
Identity = 95/212 (44.81%), Postives = 108/212 (50.94%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
           MAP  + EVKEH+++SDSS+SDRHWKRPLKKAK S D                       
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685

Query: 61  ----DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNEKYIKK-SNPSSQEPAAPLEK 120
               +  GTSKTPV +PAEQ  RP AL EEIRR KM V  K ++  S+     P A L K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745

Query: 121 VESTHASLRISEPPLDTSRKQIVGPAEPS------------------------------- 148
           V STHA L+ SE PL TS KQ +  +EPS                               
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805

BLAST of PI0011977 vs. NCBI nr
Match: KAA0050984.1 (hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-25
Identity = 86/157 (54.78%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 6   DREVKEHREQSDSSRSDRHWKRPLKKAKASSDDSFGTSK-----------TPVARPAEQP 65
           + E+KEH+++S+S +SDRHWKRPLKKAK SSDD  G              TPV++PA+Q 
Sbjct: 6   EEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSKPAKQS 65

Query: 66  SRPPALLEEIRRDKMKVNEKYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSR 125
            RP  LLEEIRR KM V  K I   +PSS+    P APL+KV ST A L+ SE  LDTS 
Sbjct: 66  LRPSTLLEEIRRGKMIVVGKDI--GSPSSKGDACPKAPLQKVNSTPAPLKFSESFLDTSN 125

Query: 126 KQIVGPAEPS-LRPEIATVLSGIAKIQADNLTPLEEY 148
           +Q     EPS LR EI TVLS I KI AD L PLEEY
Sbjct: 126 RQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEY 160

BLAST of PI0011977 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 4.8e-25
Identity = 92/198 (46.46%), Postives = 106/198 (53.54%), Query Frame = 0

Query: 1   MAPTHDREVKEHREQSDSSRSDRHWKRPLKKAKASSD----------------------- 60
           MAP  + EV EH  +SDS++SDRHWKRPLKKAK S D                       
Sbjct: 611 MAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 670

Query: 61  ------------------------DSFGTSKTPVARPAEQPSRPPALLEEIRRDKMKVNE 120
                                   +  GTS+TPV +PAEQ  RP  LLEEIRR KM V  
Sbjct: 671 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSTLLEEIRRGKMTVGG 730

Query: 121 KYIKKSNPSSQE---PAAPLEKVESTHASLRISEPPLDTSRKQIVGPAEPS-LRPEIATV 148
           K ++  +PSS+E   P A L+KV S HA L+ SE PL  S KQ +   EPS LRPEIATV
Sbjct: 731 KDLE--SPSSKEGACPKASLQKVSSAHAPLKFSELPLGVSNKQTMRNPEPSQLRPEIATV 790

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQU92.2e-2856.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1[more]
A0A5D3BT422.5e-2747.69Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3C3D73.2e-2744.81PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7U6Q51.4e-2554.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UGW62.3e-2546.46PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
KAE8648075.14.6e-2856.00hypothetical protein Csa_018860, partial [Cucumis sativus][more]
KAA0035005.15.1e-2747.69putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative m... [more]
TYK06433.16.6e-2744.81hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa][more]
KAA0050984.12.8e-2554.78hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa][more]
KAA0053466.14.8e-2546.46hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0011977.1PI0011977.1mRNA