PI0011737 (gene) Melon (PI 482460) v1

Overview


Name	PI0011737
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr03: 10936748 .. 10936984 (+)
RNA-Seq Expression	PI0011737
Synteny	PI0011737

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAATGGAGAATACACATACCCCATTTATTCGAGACGTTTAGATATGGGAAAATGTTGTTTAGTACCAACCGAAGAAAGGAACGTAACAAAGATTCTGAGACCTCGATTGTTGTTATCTTTGAGAATATCATTCCACCTCATCCATTGGTTTATCAGTGTTCACCAGAGTTTGAGTTGAACAATTGGAAGATCAAGAAAACGCTAAAAGTCACTAAAGGATCTAAAAATTAA

mRNA sequence

ATGAAGGAATGGAGAATACACATACCCCATTTATTCGAGACGTTTAGATATGGGAAAATGTTGTTTAGTACCAACCGAAGAAAGGAACGTAACAAAGATTCTGAGACCTCGATTGTTGTTATCTTTGAGAATATCATTCCACCTCATCCATTGGTTTATCAGTGTTCACCAGAGTTTGAGTTGAACAATTGGAAGATCAAGAAAACGCTAAAAGTCACTAAAGGATCTAAAAATTAA

Coding sequence (CDS)

ATGAAGGAATGGAGAATACACATACCCCATTTATTCGAGACGTTTAGATATGGGAAAATGTTGTTTAGTACCAACCGAAGAAAGGAACGTAACAAAGATTCTGAGACCTCGATTGTTGTTATCTTTGAGAATATCATTCCACCTCATCCATTGGTTTATCAGTGTTCACCAGAGTTTGAGTTGAACAATTGGAAGATCAAGAAAACGCTAAAAGTCACTAAAGGATCTAAAAATTAA

Protein sequence

MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFELNNWKIKKTLKVTKGSKN

Homology

[Close]

BLAST of PI0011737 vs. ExPASy TrEMBL
Match: A0A5D3CCB3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00540 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.7e-23
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
          MKE RI IPHL ETF+ G++LF TN+RK RN+D E SIVV+F+N I PHPLV+QC P FE
Sbjct: 1  MKEERISIPHLSETFKPGELLFDTNQRKRRNEDFEISIVVVFKNTILPHPLVHQCRPGFE 60

Query: 61 LNNWKIKKTLKVTKGSK 78
          LNNW+IKKTL++TKGSK
Sbjct: 61 LNNWEIKKTLEITKGSK 77

[Close]

BLAST of PI0011737 vs. ExPASy TrEMBL
Match: A0A5A7TZF3 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001550 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.3e-22
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
          MKE RI IPHL ETF+ G++LF T++RK  N+DSE SI V+ EN  PPHPLV++C P FE
Sbjct: 5  MKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENTSPPHPLVHKCPPGFE 64

Query: 61 LNNWKIKKTLKVTKGSK 78
          LNNW+IKKTLKVTKGS+
Sbjct: 65 LNNWEIKKTLKVTKGSQ 81

[Close]

BLAST of PI0011737 vs. ExPASy TrEMBL
Match: A0A5A7TW53 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00640 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1   MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
           MK+ RI IPHL ETF+  ++LF TN+RK RN+DSE SI V+ EN IPP+PLV+QC P FE
Sbjct: 411 MKKERISIPHLSETFKPRELLFDTNQRKRRNEDSEISIAVVSENTIPPYPLVHQCPPGFE 470

Query: 61  LNNWKIKKTLKVTKGS 77
           LNNW+IKKTL+VTKGS
Sbjct: 471 LNNWEIKKTLEVTKGS 486

[Close]

BLAST of PI0011737 vs. ExPASy TrEMBL
Match: A0A5D3BMZ2 (Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00450 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1   MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
           MKE RI IPHL ETF+ G++LF T++RK  N+DSE SI V+ ENI  PHPLV++C P FE
Sbjct: 68  MKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFE 127

Query: 61  LNNWKIKKTLKVTKGSK 78
           LNNW+IKKTLKVTKGS+
Sbjct: 128 LNNWEIKKTLKVTKGSQ 144

[Close]

BLAST of PI0011737 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1    MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
            MKE RI IPHL ETF+ G++LF T++RK  N+DSE SI V+ ENI  PHPLV++C P FE
Sbjct: 1062 MKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFE 1121

Query: 61   LNNWKIKKTLKVTKGSK 78
            LNNW+IKK+LKVTKGS+
Sbjct: 1122 LNNWEIKKSLKVTKGSQ 1138

[Close]

BLAST of PI0011737 vs. NCBI nr
Match: TYK09461.1 (uncharacterized protein E5676_scaffold499G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
          MKE RI IPHL ETF+ G++LF TN+RK RN+D E SIVV+F+N I PHPLV+QC P FE
Sbjct: 1  MKEERISIPHLSETFKPGELLFDTNQRKRRNEDFEISIVVVFKNTILPHPLVHQCRPGFE 60

Query: 61 LNNWKIKKTLKVTKGSK 78
          LNNW+IKKTL++TKGSK
Sbjct: 61 LNNWEIKKTLEITKGSK 77

[Close]

BLAST of PI0011737 vs. NCBI nr
Match: KAE8648568.1 (hypothetical protein Csa_007830, partial [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 4.5e-22
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 6  IHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFELNNWK 65
          +HIPHLFETFR G+ LF+TN+RK RNKDS TS+VVI +NIIPPHPLVYQC P+FELN+WK
Sbjct: 1  MHIPHLFETFRLGERLFNTNQRKGRNKDSNTSVVVISDNIIPPHPLVYQCPPDFELNDWK 60

Query: 66 IKKTLKV 73
           KKTL +
Sbjct: 61 TKKTLNI 67

[Close]

BLAST of PI0011737 vs. NCBI nr
Match: KAA0046609.1 (hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
          MKE RI IPHL ETF+ G++LF T++RK  N+DSE SI V+ EN  PPHPLV++C P FE
Sbjct: 5  MKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENTSPPHPLVHKCPPGFE 64

Query: 61 LNNWKIKKTLKVTKGSK 78
          LNNW+IKKTLKVTKGS+
Sbjct: 65 LNNWEIKKTLKVTKGSQ 81

[Close]

BLAST of PI0011737 vs. NCBI nr
Match: KAA0045605.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK02652.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.8e-21
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1   MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
           MK+ RI IPHL ETF+  ++LF TN+RK RN+DSE SI V+ EN IPP+PLV+QC P FE
Sbjct: 411 MKKERISIPHLSETFKPRELLFDTNQRKRRNEDSEISIAVVSENTIPPYPLVHQCPPGFE 470

Query: 61  LNNWKIKKTLKVTKGS 77
           LNNW+IKKTL+VTKGS
Sbjct: 471 LNNWEIKKTLEVTKGS 486

[Close]

BLAST of PI0011737 vs. NCBI nr
Match: TYK00092.1 (protein NYNRIN-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-21
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1   MKEWRIHIPHLFETFRYGKMLFSTNRRKERNKDSETSIVVIFENIIPPHPLVYQCSPEFE 60
           MKE RI IPHL ETF+ G++LF T++RK  N+DSE SI V+ ENI  PHPLV++C P FE
Sbjct: 68  MKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFE 127

Query: 61  LNNWKIKKTLKVTKGSK 78
           LNNW+IKKTLKVTKGS+
Sbjct: 128 LNNWEIKKTLKVTKGSQ 144

The following BLAST results are available for this feature:

BLAST of PI0011737 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011737 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCB3	5.7e-23	70.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZF3	6.3e-22	67.53	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00155...	[more]
A0A5A7TW53	1.8e-21	68.42	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280...	[more]
A0A5D3BMZ2	2.4e-21	67.53	Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G...	[more]
A0A5A7V681	6.9e-21	66.23	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0011737 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09461.1	1.2e-22	70.13	uncharacterized protein E5676_scaffold499G00540 [Cucumis melo var. makuwa]	[more]
KAE8648568.1	4.5e-22	74.63	hypothetical protein Csa_007830, partial [Cucumis sativus]	[more]
KAA0046609.1	1.3e-21	67.53	hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]	[more]
KAA0045605.1	3.8e-21	68.42	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK02652.1 Gag-pro-like protein...	[more]
TYK00092.1	4.9e-21	67.53	protein NYNRIN-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0011737 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011737.1	PI0011737.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity