PI0010659 (gene) Melon (PI 482460) v1

Overview


Name	PI0010659
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA helicase
Location	chr11: 27099329 .. 27101396 (+)
RNA-Seq Expression	PI0010659
Synteny	PI0010659

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAATCGATTCAAATTCTTACAAGGTAAGTTGCAATTTTATTTGCTAGGAGGTCCTAACTTTATTGGTTAAACTTAAAGTGTGTTTGGATTGACTTTTTAAGGGTTTATAAACACTTTTTTTGCACTTATAAATACTTTTTTAAACACTTAAAAAGTCAATCTAAACATGTACTTAGTATAGATTTTGTCTATTCTACTTGGTACTGAATAGTATTAAAATTTGACCGTTGGATTGTGAAAAAATTTAGTAGTTGTATGGAGTCTCATGACTCTTAGGTAACTAGTGATAAATATCAAAAGAATAACAAAGTGTTTTTTGTTCTCCATTCTGGTGATTGGTTTCAAGTTCATGGATTTTAGTGGTGAAGTAAAACTTAGACTTTAATGGTTTTGTACTTCCAATCTCTCAAATCTAAGTTTACTACATTAGTTCAAAATTGCATGTTAGATTGGGAGGTGTTTTCTATATAAAGCTTGAGTTTCACCCTTTTCGAAGTCGTTTTTAGGATTGTTTTGTGAGCATGGTTATAGGAATATTTGCTGGTTGTGGAAAACCACAACTGTTTTAACTCCAAATTCATATATGATTCTTCTTCCTTGTTTGGTTAGATCCCTAGATCGCCCATTGTGTTGAGGTTGCTAATAGGTAAGTTATGTGAATTTAATTTGACAATGGATGGAGTTGTACAGTAGTTTACTGTTTCATTATTCACATCGTTCTTAAACATACTCATGTGGATGAAATAACGATGATAGAAATCAAGTTACAAATGATTTTCAATGTTCTTTTTTTTTTCTGCTGGGAACCTTACTGCTAATATTTAGTTGCTTATGGATAGTTTGAAATTAATGTTTAGTTTGAAATTAATGATTTTGGTTTTTGGCTTTTGAAAACTAAACATATTTTCTCTTCATTTTTTGCAATGATTTGCATCTTTATTTAGTACAAAAGTACACATTCCTCCTACTTTGTTATCAAGGTTAGAACATATTATTGATTTACTAACCAGAATACTTTTAAAACATTGTATACTTGCATCTATATTGAGTACCTGCTGAGCTGTTGCTGCAAATATTTATTCATAAGTTTGGCACCATGAACTAATGATGTTACGAAAATTGACACTGGTTAAACCTTGTAATGTTGAAAATTAATTTTATTATCATATAATTTGGACTTTAGGTGCAACAATAGACTGGAATTATTTTGTTATTATTGGCTTCTCAGGTTTGACTTGATTTATCTAATTTTGGATAAAGCTGCTGAGCAAACAGATAGGCTAAGCATATTGTCTCACTGCACTTTGACAACCCTGAGGTCTGAGTAACTTGCAATTCCAGTCATAGTTGGGCTACTTCTAGTGTCTTGTTCATCATTTAGTTGCACTCCTCAATTTGCAGGGCATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAACATTCATCCAAAATTGTCAAATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAATAGAAAAGGAAACTTTCCAGGCAGTAGTAAAAAGGTACATTTTTTCAAATACATTCCAGTGCAAGCAAATCTGATTGTGTACCTTGTTCCCTGCCTTCTCTATATTTGTTTTTGGTTTAGCATTTTTGAAACTACAACTCATGTTGTAGTGATGGGGAGAGAGGGAAAGAGGGATTTATATTTTTCTGTTTCTTATTGGAATTTGTTATTGTATTGACAGGTCATTACAACTACCCCTGACAGATCGAGAGTTTAATATGTCTAAACGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGATTAGTGAAGCCACTTTTTCTTTTGTTGCTAGATTGAGTTGGTTCAGAAGAAGTTATTGTTGAGTGGCAGATGATCTTCCAACGATCAGATAAAGTCAAACTATATAAGAAAATTTATTTACTTTGTGAATTTAAGAATTTATTTAGTTCATTAACTAATCTATTGTTAGAGTTAGATCATGATGTTTCTTTTTATTTTTTATTAGGTGATCAATATGTGGAAAATACATTGA

mRNA sequence

ATGCAGAAATCGATTCAAATTCTTACAAGCTATGCTAGGAAAAACATTCATCCAAAATTGTCAAATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAATAGAAAAGGAAACTTTCCAGGCAGTAGTAAAAAGGTGATCAATATGTGGAAAATACATTGA

Coding sequence (CDS)

ATGCAGAAATCGATTCAAATTCTTACAAGCTATGCTAGGAAAAACATTCATCCAAAATTGTCAAATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAATAGAAAAGGAAACTTTCCAGGCAGTAGTAAAAAGGTGATCAATATGTGGAAAATACATTGA

Protein sequence

MQKSIQILTSYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVINMWKIH

Homology

[Close]

BLAST of PI0010659 vs. ExPASy Swiss-Prot
Match: Q0WVF5 (DNA replication licensing factor MCM4 OS=Arabidopsis thaliana OX=3702 GN=MCM4 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL + G F GSSKKVI
Sbjct: 667 SYARKNIHPKLSDEAAEELTRGYVELRKAGKFAGSSKKVI 706

[Close]

BLAST of PI0010659 vs. ExPASy Swiss-Prot
Match: Q5JKB0 (DNA replication licensing factor MCM4 OS=Oryza sativa subsp. japonica OX=39947 GN=MCM4 PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-10
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARK+I P+LS+EAAEELTRGYVE+ ++GN PGS KKVI
Sbjct: 685 SYARKHIQPQLSDEAAEELTRGYVEMRKRGNSPGSRKKVI 724

[Close]

BLAST of PI0010659 vs. ExPASy TrEMBL
Match: A0A6J1EAM6 (DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111432387 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.2e-12
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 5   IQILT---SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           +Q LT   SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 659 LQTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 706

[Close]

BLAST of PI0010659 vs. ExPASy TrEMBL
Match: A0A6J1I0Z7 (DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111468442 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 667 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 706

[Close]

BLAST of PI0010659 vs. ExPASy TrEMBL
Match: A0A5A7SX80 (DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00670 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 666 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 705

[Close]

BLAST of PI0010659 vs. ExPASy TrEMBL
Match: A0A6J1KVB0 (DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111496758 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 645 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 684

[Close]

BLAST of PI0010659 vs. ExPASy TrEMBL
Match: A0A0A0K5P7 (DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_7G004140 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 666 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 705

[Close]

BLAST of PI0010659 vs. NCBI nr
Match: XP_022925017.1 (DNA replication licensing factor MCM4-like [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 5   IQILT---SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           +Q LT   SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 659 LQTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 706

[Close]

BLAST of PI0010659 vs. NCBI nr
Match: XP_023511685.1 (DNA replication licensing factor MCM4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 667 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 706

[Close]

BLAST of PI0010659 vs. NCBI nr
Match: XP_038887342.1 (DNA replication licensing factor MCM4 isoform X2 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 667 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 706

[Close]

BLAST of PI0010659 vs. NCBI nr
Match: XP_022969442.1 (DNA replication licensing factor MCM4 isoform X1 [Cucurbita maxima] >XP_022969443.1 DNA replication licensing factor MCM4 isoform X2 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 667 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 706

[Close]

BLAST of PI0010659 vs. NCBI nr
Match: KAG6588427.1 (DNA replication licensing factor MCM4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL R+GNFPGSSKKVI
Sbjct: 705 SYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVI 744

[Close]

BLAST of PI0010659 vs. TAIR 10
Match: AT2G16440.1 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-13
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 10  SYARKNIHPKLSNEAAEELTRGYVELNRKGNFPGSSKKVI 50
           SYARKNIHPKLS+EAAEELTRGYVEL + G F GSSKKVI
Sbjct: 667 SYARKNIHPKLSDEAAEELTRGYVELRKAGKFAGSSKKVI 706

The following BLAST results are available for this feature:

BLAST of PI0010659 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WVF5	6.8e-12	85.00	DNA replication licensing factor MCM4 OS=Arabidopsis thaliana OX=3702 GN=MCM4 PE...	[more]
Q5JKB0	3.7e-10	75.00	DNA replication licensing factor MCM4 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of PI0010659 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAM6	9.2e-12	83.33	DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111432387 PE=3 SV=1	[more]
A0A6J1I0Z7	1.2e-11	92.50	DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111468442 PE=3 SV=1	[more]
A0A5A7SX80	1.2e-11	92.50	DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00670 ...	[more]
A0A6J1KVB0	1.2e-11	92.50	DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111496758 PE=3 SV=1	[more]
A0A0A0K5P7	1.2e-11	92.50	DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_7G004140 PE=3 SV=1	[more]

BLAST of PI0010659 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925017.1	1.9e-11	83.33	DNA replication licensing factor MCM4-like [Cucurbita moschata]	[more]
XP_023511685.1	2.5e-11	92.50	DNA replication licensing factor MCM4-like [Cucurbita pepo subsp. pepo]	[more]
XP_038887342.1	2.5e-11	92.50	DNA replication licensing factor MCM4 isoform X2 [Benincasa hispida]	[more]
XP_022969442.1	2.5e-11	92.50	DNA replication licensing factor MCM4 isoform X1 [Cucurbita maxima] >XP_02296944...	[more]
KAG6588427.1	2.5e-11	92.50	DNA replication licensing factor MCM4, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of PI0010659 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16440.1	4.8e-13	85.00	Minichromosome maintenance (MCM2/3/5) family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010659.1	PI0010659.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006271	DNA strand elongation involved in DNA replication
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0000727	double-strand break repair via break-induced replication
biological_process	GO:1902975	mitotic DNA replication initiation
biological_process	GO:0009555	pollen development
cellular_component	GO:0000785	chromatin
cellular_component	GO:0042555	MCM complex
cellular_component	GO:0009536	plastid
cellular_component	GO:0000347	THO complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0017116	single-stranded DNA helicase activity