Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTCGAGAAGATAGTAATAACAGAAAGGATAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCAACGAGGCACCAACAACGATAAAGAGCAAGAAGGGGCATCGACGAAGACGAGTAAGAAGTAAGGATAGAAAGATGGTGTCATCGTCATCGAGGTTGCAACGATCACAAAGAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGAGAAAGAGAGAAAGATGAAGTTAAGGAATTGGAGAAGGATAGCAAAAGGTAA
mRNA sequence
ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTCGAGAAGATAGTAATAACAGAAAGGATAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCAACGAGGCACCAACAACGATAAAGAGCAAGAAGGGGCATCGACGAAGACGAGTAAGAAGTAAGGATAGAAAGATGGTGTCATCGTCATCGAGGTTGCAACGATCACAAAGAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGAGAAAGAGAGAAAGATGAAGTTAAGGAATTGGAGAAGGATAGCAAAAGGTAA
Coding sequence (CDS)
ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTCGAGAAGATAGTAATAACAGAAAGGATAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCAACGAGGCACCAACAACGATAAAGAGCAAGAAGGGGCATCGACGAAGACGAGTAAGAAGTAAGGATAGAAAGATGGTGTCATCGTCATCGAGGTTGCAACGATCACAAAGAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGAGAAAGAGAGAAAGATGAAGTTAAGGAATTGGAGAAGGATAGCAAAAGGTAA
Protein sequence
MDCFLVKCGALNQVLRIREDSNNRKDRKIERDDDIVIGNEAPTTIKSKKGHRRRRVRSKDRKMVSSSSRLQRSQRERVELGGWLAAWLEEAEGEREKDEVKELEKDSKR
Homology
BLAST of PI0010606 vs. ExPASy TrEMBL
Match:
A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 3.7e-36
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 0
Query: 1 MDCFLVKCGALNQVLRIREDSNNRKDRKIERDDDIVIGNEAPTTIK-SKKGHRRRRVRSK 60
M+CFL KCG LNQVLRIRED +NRK+RKIERDDDIVIG EAP T+K S+KGH RRVRSK
Sbjct: 1 MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIG-EAPKTMKISRKGH--RRVRSK 60
Query: 61 DRKMVSSSSRLQRSQRERVELGGWLAAWLEEAEGEREKDEVKELEKDSKR 110
+RKM+ SSSRLQRSQ ERVELGGWLAAWLEEAEGEREKDEVKELEK+ KR
Sbjct: 61 ERKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107
BLAST of PI0010606 vs. NCBI nr
Match:
KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])
HSP 1 Score: 160.6 bits (405), Expect = 7.6e-36
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 0
Query: 1 MDCFLVKCGALNQVLRIREDSNNRKDRKIERDDDIVIGNEAPTTIK-SKKGHRRRRVRSK 60
M+CFL KCG LNQVLRIRED +NRK+RKIERDDDIVIG EAP T+K S+KGH RRVRSK
Sbjct: 1 MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIG-EAPKTMKISRKGH--RRVRSK 60
Query: 61 DRKMVSSSSRLQRSQRERVELGGWLAAWLEEAEGEREKDEVKELEKDSKR 110
+RKM+ SSSRLQRSQ ERVELGGWLAAWLEEAEGEREKDEVKELEK+ KR
Sbjct: 61 ERKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107
BLAST of PI0010606 vs. NCBI nr
Match:
KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 0
Query: 1 MDCFLVKCGALNQVLRIREDSNNRKDRKIERDDDIVIGNEAPTTIKSKK-GHRRRRVRSK 60
MDCFLV CG Q +RI+ D+N RK +K+ RD +V +E PTT K KK RRRRV
Sbjct: 1 MDCFLV-CGVSRQAMRIQADNNKRKVKKVVRDGIVV--DETPTTTKGKKWQRRRRRVGDN 60
Query: 61 DRKMVSSSSRLQRSQRERVELGGWLAAWLEEAE-GEREKDEVKELE 105
+R+ +SRLQR+ RVE GGWLAAWLEEAE E EK K LE
Sbjct: 61 ERE----TSRLQRTDGGRVESGGWLAAWLEEAEMKELEKAHAKGLE 99
BLAST of PI0010606 vs. NCBI nr
Match:
KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 0
Query: 1 MDCFLVKCGALNQVLRIREDSNNRKDRKIERDDDIVIGNEAPTTIKSKKGHRRRRVRSKD 60
M CF +KCG QV RI+ D ++K + ++DD + +EAP I +++ H ++RV SK+
Sbjct: 1 MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDDTV---DEAPVEISNQRQH-QQRVDSKE 60
Query: 61 RKMVSSSSRLQRSQRERVELGGWLAAWLEEAEGEREKDEVKELEKDSKR 110
RK S L+R + E GWLAAWLEEAEG EKDE+K L++ +KR
Sbjct: 61 RKTTS----LKRGGKS--ESSGWLAAWLEEAEGHGEKDEIKALKEAAKR 99
BLAST of PI0010606 vs. NCBI nr
Match:
KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 45/93 (48.39%), Postives = 56/93 (60.22%), Query Frame = 0
Query: 13 QVLRIREDSNNRKDRKIERDDDIVIGNEAPTTIKSKKGHRRRRVRSKDRKMVSSSSRLQR 72
QV RI +D ++K RK +RDD + EA G++RRR R D K + S R
Sbjct: 130 QVSRIYDDEGSKKSRKTQRDDTVGDTLEA-------IGNKRRRQRRVDNKEQKTMSFTLR 189
Query: 73 SQRERVELGGWLAAWLEEAEGEREKDEVKELEK 106
+ ER ELGGWLAAWLEEAE EKDE+K LE+
Sbjct: 190 QRGERNELGGWLAAWLEEAESHTEKDEIKALEE 215
BLAST of PI0010606 vs. NCBI nr
Match:
KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 0
Query: 15 LRIREDSNNRKDRKIERDDDIVIGNEAPTTIKSKK-GHRRRRVRSKDRKMVSSSSRLQRS 74
+RI+ D+N RK +K+ RD +V +E PTT K KK RRRRV +R+ +SRLQR+
Sbjct: 226 MRIQADNNKRKVKKVVRDGIVV--DETPTTTKGKKWQRRRRRVGDNERE----TSRLQRT 285
Query: 75 QRERVELGGWLAAWLEEAE-GEREKDEVKELE 105
RVE GGWLAAWLEEAE E EK K LE
Sbjct: 286 DGGRVESGGWLAAWLEEAEMKELEKAHAKGLE 311
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K1A5 | 3.7e-36 | 82.73 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN43248.1 | 7.6e-36 | 82.73 | hypothetical protein Csa_020351 [Cucumis sativus] | [more] |
| KAG6572110.1 | 4.5e-12 | 54.72 | hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6589009.1 | 4.2e-10 | 44.95 | hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6589008.1 | 1.5e-07 | 48.39 | hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7011763.1 | 4.3e-07 | 53.26 | Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
