PI0010460 (gene) Melon (PI 482460) v1

Overview


Name	PI0010460
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Dynein light chain, type 1/2
Location	chr02: 23936193 .. 23937006 (+)
RNA-Seq Expression	PI0010460
Synteny	PI0010460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCTTAACACAACTTCCTCATCCAAATCCATGGACCCCCACCTCAGAAACCAACACCCCGACGCCGCCGTCGCCGTCGCCACTCCTGCCGTTGTCTCTCCCCACCCAACATCACCAAAACTAGATCCTCCAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCCCCTATCGGCCCCAGAACAGAGCAAAAGGTAGCCAAAAAGCCCAACGAAACCCCTCAAGAACACTCCACTACAGAGAAATTCAATGATTCTGAAGAGAGATTTGAACATATGATCAACTGTATCACTGCCAAAGAAAAGGAAATGAAACAACTTCTAAAGGAACATGAACATCTCACTCGCAGACTCTCTGTTTCTCTTTCTTCATCACGTAGTGGAAGAAGAAGATCATTCTATGGCTCGCAGATTCAGTTAGCGGATGTGTTTGCTAAAAATGGAGTCAAAGTGGTTTCGGCCGATATGCCACCGTTTATGCAGATCCATGCCGTCGATTGCGCTAGAAAAGCACATGACAGTATGGAAAAGTTCACTTCCAAATCCCTTGCCCTGACTCTCAAGAAGGTACATACAAATCAATTAGTTCATTTTGGTTTTTCTTGTTCAAAATGGTGAATTGGTTGCCTGATTTTGGCAGGAATTTGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTAACACATTCAGTGGGTGGATTTCTGTATTTTTCCATGGCTCAGAAGCTTTACATTCTTCTCTTCAAAACTACTGTACAAAGAGCCAATTAG

mRNA sequence

ATGGCTACTCTTAACACAACTTCCTCATCCAAATCCATGGACCCCCACCTCAGAAACCAACACCCCGACGCCGCCGTCGCCGTCGCCACTCCTGCCGTTGTCTCTCCCCACCCAACATCACCAAAACTAGATCCTCCAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCCCCTATCGGCCCCAGAACAGAGCAAAAGGTAGCCAAAAAGCCCAACGAAACCCCTCAAGAACACTCCACTACAGAGAAATTCAATGATTCTGAAGAGAGATTTGAACATATGATCAACTGTATCACTGCCAAAGAAAAGGAAATGAAACAACTTCTAAAGGAACATGAACATCTCACTCGCAGACTCTCTGTTTCTCTTTCTTCATCACGTAGTGGAAGAAGAAGATCATTCTATGGCTCGCAGATTCAGTTAGCGGATGTGTTTGCTAAAAATGGAGTCAAAGTGGTTTCGGCCGATATGCCACCGTTTATGCAGATCCATGCCGTCGATTGCGCTAGAAAAGCACATGACAGTATGGAAAAGTTCACTTCCAAATCCCTTGCCCTGACTCTCAAGAAGGAATTTGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTAACACATTCAGTGGGTGGATTTCTGTATTTTTCCATGGCTCAGAAGCTTTACATTCTTCTCTTCAAAACTACTGTACAAAGAGCCAATTAG

Coding sequence (CDS)

ATGGCTACTCTTAACACAACTTCCTCATCCAAATCCATGGACCCCCACCTCAGAAACCAACACCCCGACGCCGCCGTCGCCGTCGCCACTCCTGCCGTTGTCTCTCCCCACCCAACATCACCAAAACTAGATCCTCCAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCCCCTATCGGCCCCAGAACAGAGCAAAAGGTAGCCAAAAAGCCCAACGAAACCCCTCAAGAACACTCCACTACAGAGAAATTCAATGATTCTGAAGAGAGATTTGAACATATGATCAACTGTATCACTGCCAAAGAAAAGGAAATGAAACAACTTCTAAAGGAACATGAACATCTCACTCGCAGACTCTCTGTTTCTCTTTCTTCATCACGTAGTGGAAGAAGAAGATCATTCTATGGCTCGCAGATTCAGTTAGCGGATGTGTTTGCTAAAAATGGAGTCAAAGTGGTTTCGGCCGATATGCCACCGTTTATGCAGATCCATGCCGTCGATTGCGCTAGAAAAGCACATGACAGTATGGAAAAGTTCACTTCCAAATCCCTTGCCCTGACTCTCAAGAAGGAATTTGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTAACACATTCAGTGGGTGGATTTCTGTATTTTTCCATGGCTCAGAAGCTTTACATTCTTCTCTTCAAAACTACTGTACAAAGAGCCAATTAG

Protein sequence

MATLNTTSSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHPPSPIGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHLTRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRAN

Homology

[Close]

BLAST of PI0010460 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-16
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 155 VKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 214
           + V +ADMP FMQ  A +C  KA +  E    + +A+ +KKEFD  Y P WHCIVGKSFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 215 SFVTHSVGGFLYFSMAQKLYILLFK 240
           SFVTH    F+YF++  K  +LLFK
Sbjct: 68  SFVTHETKNFIYFNI-NKHSVLLFK 89

[Close]

BLAST of PI0010460 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-15
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 157 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGS 216
           + +ADMP  MQ  AVDCA +A   +EKF   K +A  +KKEFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQA---LEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 217 FVTHSVGGFLYFSMAQKLYILLFKT 241
           +VTH    F+YF + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAVLLFKS 88

[Close]

BLAST of PI0010460 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 157 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGS 216
           + +ADM   MQ  AVDCA +A   MEK+   K +A  +KKEFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 217 FVTHSVGGFLYFSMAQKLYILLFKT 241
           +VTH    F+YF + Q + ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of PI0010460 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 157 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGS 216
           + +ADM   MQ  AVDCA +A   MEK+   K +A  +KKEFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 217 FVTHSVGGFLYFSMAQKLYILLFKT 241
           +VTH    F+YF + Q + ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of PI0010460 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 157 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGS 216
           + +ADM   MQ  AVDCA +A   MEK+   K +A  +KKEFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 217 FVTHSVGGFLYFSMAQKLYILLFKT 241
           +VTH    F+YF + Q + ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of PI0010460 vs. ExPASy TrEMBL
Match: A0A5A7UPX5 (Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002210 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 234/246 (95.12%), Postives = 239/246 (97.15%), Query Frame = 0


Query: 1   MATLNTTSSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60
           MAT NTTSSSKSMDPHLRNQ PDAAVAV TPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVAVVTPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60

Query: 61  PSPIGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHL 120
           PSP+GPRTEQKVAKK NETPQEH+TTEKFN SEERFEHMINCITAKE+EMKQLLKEHEH+
Sbjct: 61  PSPVGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMINCITAKEREMKQLLKEHEHV 120

Query: 121 TRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS 180
           TRRLS+SLSSSRSGRRRSFYGSQIQL DVFAKNG KVVSADMPPFMQIHAVDCARKAHDS
Sbjct: 121 TRRLSISLSSSRSGRRRSFYGSQIQLGDVFAKNGAKVVSADMPPFMQIHAVDCARKAHDS 180

Query: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240
           MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT
Sbjct: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240

Query: 241 TVQRAN 247
           TVQRAN
Sbjct: 241 TVQRAN 246

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BLAST of PI0010460 vs. ExPASy TrEMBL
Match: A0A0A0LPA2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008410 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 236/246 (95.93%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 1   MATLNTTSSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60
           MAT NTTSSSKSMDPHLRNQ PDAAVAV TPAVVSPHPTSPKLD PTPLSDSDNLSKS P
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVAVVTPAVVSPHPTSPKLDSPTPLSDSDNLSKSRP 60

Query: 61  PSPIGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHL 120
           PSP+GPRTEQKVAK PNETPQEHSTTEKFN SEERFEHMINCITAKE+EMKQLLKEHEHL
Sbjct: 61  PSPVGPRTEQKVAKNPNETPQEHSTTEKFNGSEERFEHMINCITAKEREMKQLLKEHEHL 120

Query: 121 TRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS 180
           TRRLSVSLSSSRSGRRRSFYGSQIQL DVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS
Sbjct: 121 TRRLSVSLSSSRSGRRRSFYGSQIQLGDVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS 180

Query: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240
           MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT
Sbjct: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240

Query: 241 TVQRAN 247
           TVQRAN
Sbjct: 241 TVQRAN 246

[Close]

BLAST of PI0010460 vs. ExPASy TrEMBL
Match: A0A1S3BVI8 (uncharacterized protein LOC103493957 OS=Cucumis melo OX=3656 GN=LOC103493957 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 234/246 (95.12%), Postives = 239/246 (97.15%), Query Frame = 0


Query: 1   MATLNTTSSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60
           MAT NTTSSSKSMDPHLRNQ PDAAVAV TPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVAVVTPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60

Query: 61  PSPIGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHL 120
           PSP+GPRTEQKVAKK NETPQEH+TTEKFN SEERFEHMINCITAKE+EMKQLLKEHEH+
Sbjct: 61  PSPVGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMINCITAKEREMKQLLKEHEHV 120

Query: 121 TRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS 180
           TRRLS+SLSSSRSGRRRSFYGSQIQL DVFAKNG KVVSADMPPFMQIHAVDCARKAHDS
Sbjct: 121 TRRLSISLSSSRSGRRRSFYGSQIQLGDVFAKNGAKVVSADMPPFMQIHAVDCARKAHDS 180

Query: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240
           MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT
Sbjct: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240

Query: 241 TVQRAN 247
           TVQRAN
Sbjct: 241 TVQRAN 246

[Close]

BLAST of PI0010460 vs. ExPASy TrEMBL
Match: A0A6J1E0M2 (uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC111429742 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.7e-103
Identity = 210/243 (86.42%), Postives = 218/243 (89.71%), Query Frame = 0


Query: 9   SSKSMDPHLRNQHPDAAVA--VATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHPPSP--I 68
           +S S+DP+ RN HP AA A  V T A VSP+PTS KLDP TPLSDSD LSKSHPPSP  +
Sbjct: 6   TSSSIDPNRRN-HPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMV 65

Query: 69  GPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHLTRRL 128
           GPRT Q VAKKPNE P E STTEKFNDSEE+FE MINCITAKE+EMKQLLKEHEHLTRRL
Sbjct: 66  GPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHLTRRL 125

Query: 129 SVSLSSSRSG-RRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDSMEK 188
           SVSLSSSRSG RRRS  GSQI+LADVFA NGVKVVSADMPPFMQIHAVDCARKAHDSMEK
Sbjct: 126 SVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEK 185

Query: 189 FTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQ 247
           FTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQ
Sbjct: 186 FTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQ 245

[Close]

BLAST of PI0010460 vs. ExPASy TrEMBL
Match: A0A6J1IBG1 (uncharacterized protein LOC111471403 OS=Cucurbita maxima OX=3661 GN=LOC111471403 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.5e-98
Identity = 196/252 (77.78%), Postives = 209/252 (82.94%), Query Frame = 0


Query: 8   SSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHPPSP---- 67
           S    MD H R Q    A A      VSPHPTSPKLDP TPLSDSDNLSKSHPPSP    
Sbjct: 27  SPPPKMDLHRRTQPTTPAAA----TTVSPHPTSPKLDPITPLSDSDNLSKSHPPSPKVVP 86

Query: 68  ---------IGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLL 127
                    +GPRT  K AKKPNETP++HSTTEKFNDSEE+FE MINCIT KE+EMKQLL
Sbjct: 87  VSLHSNPKMVGPRTVHKQAKKPNETPRQHSTTEKFNDSEEKFERMINCITTKEREMKQLL 146

Query: 128 KEHEHLTRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCA 187
            +H+HLTRRLSVSLSSSRSGRR+S  GSQIQLA++FA NGVKVVSADMPPFMQIHAVDCA
Sbjct: 147 VDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSADMPPFMQIHAVDCA 206

Query: 188 RKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLY 247
           RKAHDSMEKFTSKSLAL+LK+EFDG YGPAWHCIVGKSFGSFVTHSVGGFLYFS+AQKLY
Sbjct: 207 RKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFGSFVTHSVGGFLYFSLAQKLY 266

[Close]

BLAST of PI0010460 vs. NCBI nr
Match: XP_004138141.2 (uncharacterized protein LOC101215824 [Cucumis sativus] >KGN63633.1 hypothetical protein Csa_013893 [Cucumis sativus])

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-125
Identity = 236/246 (95.93%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 1   MATLNTTSSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60
           MAT NTTSSSKSMDPHLRNQ PDAAVAV TPAVVSPHPTSPKLD PTPLSDSDNLSKS P
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVAVVTPAVVSPHPTSPKLDSPTPLSDSDNLSKSRP 60

Query: 61  PSPIGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHL 120
           PSP+GPRTEQKVAK PNETPQEHSTTEKFN SEERFEHMINCITAKE+EMKQLLKEHEHL
Sbjct: 61  PSPVGPRTEQKVAKNPNETPQEHSTTEKFNGSEERFEHMINCITAKEREMKQLLKEHEHL 120

Query: 121 TRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS 180
           TRRLSVSLSSSRSGRRRSFYGSQIQL DVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS
Sbjct: 121 TRRLSVSLSSSRSGRRRSFYGSQIQLGDVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS 180

Query: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240
           MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT
Sbjct: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240

Query: 241 TVQRAN 247
           TVQRAN
Sbjct: 241 TVQRAN 246

[Close]

BLAST of PI0010460 vs. NCBI nr
Match: XP_008453160.1 (PREDICTED: uncharacterized protein LOC103493957 [Cucumis melo] >KAA0057912.1 Dynein light chain, type 1/2 [Cucumis melo var. makuwa] >TYJ98600.1 Dynein light chain, type 1/2 [Cucumis melo var. makuwa])

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-125
Identity = 234/246 (95.12%), Postives = 239/246 (97.15%), Query Frame = 0


Query: 1   MATLNTTSSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60
           MAT NTTSSSKSMDPHLRNQ PDAAVAV TPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP
Sbjct: 1   MATHNTTSSSKSMDPHLRNQPPDAAVAVVTPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60

Query: 61  PSPIGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHL 120
           PSP+GPRTEQKVAKK NETPQEH+TTEKFN SEERFEHMINCITAKE+EMKQLLKEHEH+
Sbjct: 61  PSPVGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMINCITAKEREMKQLLKEHEHV 120

Query: 121 TRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDS 180
           TRRLS+SLSSSRSGRRRSFYGSQIQL DVFAKNG KVVSADMPPFMQIHAVDCARKAHDS
Sbjct: 121 TRRLSISLSSSRSGRRRSFYGSQIQLGDVFAKNGAKVVSADMPPFMQIHAVDCARKAHDS 180

Query: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240
           MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT
Sbjct: 181 MEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKT 240

Query: 241 TVQRAN 247
           TVQRAN
Sbjct: 241 TVQRAN 246

[Close]

BLAST of PI0010460 vs. NCBI nr
Match: XP_038879954.1 (uncharacterized protein LOC120071657 [Benincasa hispida])

HSP 1 Score: 418.3 bits (1074), Expect = 4.5e-113
Identity = 224/259 (86.49%), Postives = 231/259 (89.19%), Query Frame = 0


Query: 1   MATLNTTSSSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHP 60
           MA+ NT+SSSKSMDPH RNQ P AA AV TPAVVSPHPTSPKLDP TPLSDSDNLSKS+P
Sbjct: 1   MASHNTSSSSKSMDPHRRNQ-PPAAAAVVTPAVVSPHPTSPKLDPTTPLSDSDNLSKSNP 60

Query: 61  PSP-------------IGPRTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKE 120
           PSP             +GP T QKVAKKPNETPQEHSTTEKFNDSEER+E MINCITAKE
Sbjct: 61  PSPKVDSISLHSHPKMVGPITVQKVAKKPNETPQEHSTTEKFNDSEERYERMINCITAKE 120

Query: 121 KEMKQLLKEHEHLTRRLSVSLSSSRSGRRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQ 180
           +EMKQLLKEHEHLTRRLSVSLSSSRSGRR+S   SQIQLADVFA NGVKVVSADMPPFMQ
Sbjct: 121 REMKQLLKEHEHLTRRLSVSLSSSRSGRRKSICVSQIQLADVFANNGVKVVSADMPPFMQ 180

Query: 181 IHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYF 240
           IHAVDCARK HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYF
Sbjct: 181 IHAVDCARKTHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYF 240

Query: 241 SMAQKLYILLFKTTVQRAN 247
           SMAQKLYILLFKTTVQRAN
Sbjct: 241 SMAQKLYILLFKTTVQRAN 258

[Close]

BLAST of PI0010460 vs. NCBI nr
Match: XP_023516401.1 (uncharacterized protein LOC111780277 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397.5 bits (1020), Expect = 8.3e-107
Identity = 212/241 (87.97%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 9   SSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHPPSP--IGP 68
           +S S+DP+ RN HP AA +V T A VSP+PTSPKLDP TPLSDSD LSKSHPPSP  +GP
Sbjct: 6   TSSSIDPNRRN-HPAAAASVVTLAAVSPNPTSPKLDPITPLSDSDKLSKSHPPSPKMVGP 65

Query: 69  RTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHLTRRLSV 128
           RT Q VAKKPNE PQEHSTTEKFNDSEE+FE MINCITAKE+EMKQLLKEHEHLTRRLSV
Sbjct: 66  RTVQMVAKKPNEAPQEHSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHLTRRLSV 125

Query: 129 SLSSSRSG-RRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT 188
           SLSSSRSG RRRS  GSQI+LADVFA NGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT
Sbjct: 126 SLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT 185

Query: 189 SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRA 247
           SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRA
Sbjct: 186 SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRA 245

[Close]

BLAST of PI0010460 vs. NCBI nr
Match: KAG6589483.1 (Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391.0 bits (1003), Expect = 7.8e-105
Identity = 211/241 (87.55%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 9   SSKSMDPHLRNQHPDAAVAVATPAVVSPHPTSPKLDPPTPLSDSDNLSKSHPPSP--IGP 68
           +S S+DP+ RN HP  A +V T A VSP+PTSPKLDP TPLSDSD LSKSHPPSP  +GP
Sbjct: 6   TSSSIDPNRRN-HP--AASVVTLAAVSPNPTSPKLDPITPLSDSDKLSKSHPPSPKMVGP 65

Query: 69  RTEQKVAKKPNETPQEHSTTEKFNDSEERFEHMINCITAKEKEMKQLLKEHEHLTRRLSV 128
           RT Q VAKKPNE PQEHSTTEKFN+SEERFE MINCITAKE+EMKQLLKEHEHLTRRLSV
Sbjct: 66  RTVQMVAKKPNEAPQEHSTTEKFNNSEERFERMINCITAKEREMKQLLKEHEHLTRRLSV 125

Query: 129 SLSSSRSG-RRRSFYGSQIQLADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT 188
           SLSSSRSG RRRS  GSQI+LADVFA NGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT
Sbjct: 126 SLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT 185

Query: 189 SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRA 247
           SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRA
Sbjct: 186 SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRA 243

[Close]

BLAST of PI0010460 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 128.3 bits (321), Expect = 8.8e-30
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 155 VKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 214
           V++++ADMP FMQ HA  CAR   DS+EKF+SK +A  LKKEFD  YGPAWHCIVG SFG
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

Query: 215 SFVTHSVGGFLYFSMAQKLYILLFKTTVQRAN 247
           SFVTHS G F+YFSM  KLY+LLFKT V+ A+
Sbjct: 177 SFVTHSTGCFIYFSM-DKLYVLLFKTKVRPAS 207

[Close]

BLAST of PI0010460 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-19
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 135 RRRSFYGSQIQ------LADVFAKNGVKVVSADMPPFMQIHAVDCARKAHDSME-KFTSK 194
           RR  F  S IQ        D   +  V+V ++DMP   Q  A   +R+  ++   K  +K
Sbjct: 10  RRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNK 69

Query: 195 SLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQ 244
            LA  LKK+FD  YGPAWHCIVG SFGS+VTHS GGFLYF +  K+Y+LLFKT V+
Sbjct: 70  RLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQI-DKVYVLLFKTAVE 124

[Close]

BLAST of PI0010460 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-14
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 157 VVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSF 216
           V  +DMP  MQ+ A+  A +A D  + F  KS+A  +KKEFD  YG  W C+VG +FG F
Sbjct: 8   VEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGCF 67

Query: 217 VTHSVGGFLYFSMAQKLYILLFK 240
            THS G F+YF + + L  L+FK
Sbjct: 68  FTHSKGTFIYFQL-ETLKFLIFK 89

[Close]

BLAST of PI0010460 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 156 KVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGS 215
           KV   DMP  MQ+ A+  A ++ D  + F S S+A  +KKEFD  YG  W C+VG +FG 
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query: 216 FVTHSVGGFLYFSMAQKLYILLFK 240
           F THS G F+YF +   L  L+FK
Sbjct: 67  FFTHSKGTFIYFHLG-TLNFLIFK 89

[Close]

BLAST of PI0010460 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 157 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGS 216
           + SADM   MQ  A++ A  A    EK++  K +A  +KKEFD  +G  WHCIVG++FGS
Sbjct: 42  IKSADMKDDMQKEAIEIAISA---FEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGS 101

Query: 217 FVTHSVGGFLYFSMAQKLYILLFKT 241
           +VTH    F+YF + QK  +LLFK+
Sbjct: 102 YVTHETNHFVYFYLDQKA-VLLFKS 122

The following BLAST results are available for this feature:

BLAST of PI0010460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86A88	3.2e-16	51.76	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
O02414	2.7e-15	51.76	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q3MHR3	1.7e-14	51.76	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	1.7e-14	51.76	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	1.7e-14	51.76	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]

BLAST of PI0010460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPX5	1.9e-125	95.12	Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0LPA2	1.9e-125	95.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008410 PE=4 SV=1	[more]
A0A1S3BVI8	1.9e-125	95.12	uncharacterized protein LOC103493957 OS=Cucumis melo OX=3656 GN=LOC103493957 PE=...	[more]
A0A6J1E0M2	2.7e-103	86.42	uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A6J1IBG1	4.5e-98	77.78	uncharacterized protein LOC111471403 OS=Cucurbita maxima OX=3661 GN=LOC111471403...	[more]

BLAST of PI0010460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138141.2	4.0e-125	95.93	uncharacterized protein LOC101215824 [Cucumis sativus] >KGN63633.1 hypothetical ...	[more]
XP_008453160.1	4.0e-125	95.12	PREDICTED: uncharacterized protein LOC103493957 [Cucumis melo] >KAA0057912.1 Dyn...	[more]
XP_038879954.1	4.5e-113	86.49	uncharacterized protein LOC120071657 [Benincasa hispida]	[more]
XP_023516401.1	8.3e-107	87.97	uncharacterized protein LOC111780277 [Cucurbita pepo subsp. pepo]	[more]
KAG6589483.1	7.8e-105	87.55	Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of PI0010460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	8.8e-30	67.39	Dynein light chain type 1 family protein	[more]
AT1G23220.1	1.4e-19	48.28	Dynein light chain type 1 family protein	[more]
AT1G52240.2	8.8e-14	46.99	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	1.1e-13	46.43	Dynein light chain type 1 family protein	[more]
AT4G15930.1	3.3e-13	47.06	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..93
None	No IPR available	PANTHER	PTHR11886:SF80	INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE	coord: 38..246
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 150..240 e-value: 9.7E-38 score: 141.4
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 155..240 e-value: 1.7E-28 score: 98.8
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 38..246
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 148..241 e-value: 1.1E-30 score: 107.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 153..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010460.1	PI0010460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding