PI0009913 (gene) Melon (PI 482460) v1

Overview
NamePI0009913
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Locationchr12: 15883985 .. 15884690 (+)
RNA-Seq ExpressionPI0009913
SyntenyPI0009913
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAACACTCAAATGAAAGCAGCTTTAATCTTAATAATTATGATGATATATTTAGAACATCATCATCAAAGAATTGCAGTAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTGGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTAGTGTCTATTTTCAACTTTCCTCTTCTCCATTCTAAACCATGCCATGGAAAGAAAATACATGTTCTTAATTTGTAATATTGGAATTCTGTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCTTTGGGAATTATTGTTCATTTCCCCATTCCCATCATCATCATCATCATCATCATCATGACAACTTATTTGAACATGATGTTGTAGTCGCTGCTGCCATTGATGAAGAATCTGATTCTGATCAGGCTCGAGAAGGAGGAGAAGAAGAAGAAGAAGAAAAGGAAGAAGCTGGAATTTGTAGAGGTGACTTATTAGAGGAAGAATTAGAAGAAGATGATGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAGGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

mRNA sequence

ATGGAACAACACTCAAATGAAAGCAGCTTTAATCTTAATAATTATGATGATATATTTAGAACATCATCATCAAAGAATTGCAGTAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTGGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTATCGCTGCTGCCATTGATGAAGAATCTGATTCTGATCAGGCTCGAGAAGGAGGAGAAGAAGAAGAAGAAGAAAAGGAAGAAGCTGGAATTTGTAGAGGTGACTTATTAGAGGAAGAATTAGAAGAAGATGATGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAGGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

Coding sequence (CDS)

ATGGAACAACACTCAAATGAAAGCAGCTTTAATCTTAATAATTATGATGATATATTTAGAACATCATCATCAAAGAATTGCAGTAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTGGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTATCGCTGCTGCCATTGATGAAGAATCTGATTCTGATCAGGCTCGAGAAGGAGGAGAAGAAGAAGAAGAAGAAAAGGAAGAAGCTGGAATTTGTAGAGGTGACTTATTAGAGGAAGAATTAGAAGAAGATGATGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAGGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

Protein sequence

MEQHSNESSFNLNNYDDIFRTSSSKNCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPHSFIAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEEEEEDQKEGKRRELEIVVSTEELNKKIEDFIRKMKEEMRIEAAQTHLIAV
Homology
BLAST of PI0009913 vs. ExPASy TrEMBL
Match: A0A0A0LVQ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.4e-30
Identity = 104/212 (49.06%), Postives = 118/212 (55.66%), Query Frame = 0

Query: 1   MEQHSNESSFNLNNYDDIFR-TSSSKNCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPH 60
           MEQH +ESS NLNNYD IFR TSSSKNCSSKVEWLKRMVKL VFCL+LGLFFS+FSLFPH
Sbjct: 1   MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61  SF---------------------------------------------------------- 120
           SF                                                          
Sbjct: 61  SFSVYFSTFLFSILTHAVERKYMFLICNIGILFLLATSSVSSSSSSSSFGNYCPFPHSRH 120

Query: 121 ------------IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFT 142
                        A A DEESDSD      +EEEEEKEE GICRG+LLEEELEED+GCFT
Sbjct: 121 NHHHNLFEHDVVAAVATDEESDSDHT----QEEEEEKEE-GICRGELLEEELEEDEGCFT 180

BLAST of PI0009913 vs. ExPASy TrEMBL
Match: A0A6J1CN51 (nardilysin-like OS=Momordica charantia OX=3673 GN=LOC111012652 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 96/218 (44.04%), Postives = 123/218 (56.42%), Query Frame = 0

Query: 1   MEQHSN----ESSFNLNNYDDIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFS 60
           ME+H      +SS +L N D + RT    N SSKV+ LK MVK +    VFCLV+ LF S
Sbjct: 1   MEEHPQAKDLDSSESL-NLDGMCRT----NWSSKVQRLKGMVKFVVSVCVFCLVVALFLS 60

Query: 61  VFSLFPHSF-----------------------------IAAAIDEESDS-----DQAREG 120
           +FSLFPHSF                             +A +  + S+S      + RE 
Sbjct: 61  LFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNSIPHHHYELREE 120

Query: 121 GEEEEEEKEE---AGICRGDLLEE-------ELEEDDGCFTDEVEEEEEDQKEGKRRELE 164
            +EEE E ++   + I   DL          E E+D+GCFTDEVEEEEE+++  +  ELE
Sbjct: 121 EKEEEVEDDDDDTSAIHSADLAAVGPTSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELE 180

BLAST of PI0009913 vs. ExPASy TrEMBL
Match: A0A6J1EH25 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434039 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-17
Identity = 101/245 (41.22%), Postives = 121/245 (49.39%), Query Frame = 0

Query: 9   SFNLNNYD--DIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFSVFSLFPHSF- 68
           + N+++Y+  D+ RTSS+ N    VE LKRMVK I    VF LVL LFFS FSLFPHSF 
Sbjct: 7   AINMDSYESLDLDRTSSTNN---NVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFT 66

Query: 69  ------------------------------------------------------------ 128
                                                                       
Sbjct: 67  VYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSSFSH 126

Query: 129 -----------IAAAID-EESDSDQAREGGEEEEEEKEEAGICRGDLLE----------E 164
                      +A A D  +SD  + +E  E E+E ++E      D  E          E
Sbjct: 127 SVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHEEQE 186

BLAST of PI0009913 vs. ExPASy TrEMBL
Match: A0A6P5WEK0 (histone chaperone ASF1-like OS=Durio zibethinus OX=66656 GN=LOC111274066 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 68  EESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEEEEEDQKEGKRREL 127
           EE + ++  E  EEEE E E A I   D        + GCF      ++E+Q+EG   E+
Sbjct: 14  EEEEEEEEEEEEEEEERESEVAVIVEDD------GGESGCFV-----KQEEQQEGVEAEV 73

Query: 128 ---EIVVSTEELNKKIEDFIRKMKEEMRIEAAQTHLIAV 164
              E V STE+LN+K E+FIRKMKEE+RIEA Q HLIAV
Sbjct: 74  GANEEVTSTEDLNRKFEEFIRKMKEEIRIEAQQQHLIAV 101

BLAST of PI0009913 vs. ExPASy TrEMBL
Match: A0A1S8AE58 (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 69  ESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEE---EEEDQKEGKRR 128
           ++++++ RE  E+E+EE EE      +  EEE E +   F DEVEE   EEE+++E +  
Sbjct: 177 KTETEETRE--EQEKEEAEEESALLEEDGEEEAEAESSFFIDEVEEGEGEEEEEEEEEEE 236

Query: 129 ELEIVVSTEELNKKIEDFIRKMKEEMRIEAAQ 158
           E    +S EELNKK EDFIRKMKEE+RIEA Q
Sbjct: 237 EGNGKLSDEELNKKFEDFIRKMKEELRIEARQ 266

BLAST of PI0009913 vs. NCBI nr
Match: XP_031736046.1 (uncharacterized protein LOC105434473 [Cucumis sativus] >KAE8652832.1 hypothetical protein Csa_022756 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 4.0e-49
Identity = 142/238 (59.66%), Postives = 149/238 (62.61%), Query Frame = 0

Query: 1   MEQHSNESSFNLNNYDDIFR-TSSSKNCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPH 60
           MEQH +ESS NLNNYD IFR TSSSKNCSSKVEWLKRMVKL VFCL+LGLFFS+FSLFPH
Sbjct: 1   MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61  SF---------------------------------------------------------- 120
           SF                                                          
Sbjct: 61  SFSVYFSTFLFSILTHAVERKYMFLICNIGILFLLATSSVSSSSSSSSFGNYCPFPHSRH 120

Query: 121 ------------IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFT 164
                        A A DEESDSD      +EEEEEKEE GICRG+LLEEELEED+GCFT
Sbjct: 121 NHHHNLFEHDVVAAVATDEESDSDHT----QEEEEEKEE-GICRGELLEEELEEDEGCFT 180

BLAST of PI0009913 vs. NCBI nr
Match: XP_038877796.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 6.7e-28
Identity = 106/227 (46.70%), Postives = 122/227 (53.74%), Query Frame = 0

Query: 6   NESSFNLNNYDDIFRTSSSK-NCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPHSF--- 65
           +  S NL + DD  RTSS   NC SKVE L RMVK  VF LVL LFFS FSLFPHSF   
Sbjct: 12  SNQSLNLYDDDDDIRTSSKDYNCCSKVEMLIRMVKFTVFSLVLALFFSFFSLFPHSFSVY 71

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 72  FSTFMFSLLNHAMERKYMFLICNGILFLLATSSVIEDSSSSSSSFGTCSFNSHSDHHHHH 131

Query: 126 -----IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEEEE 164
                + AAID     +  ++  EEEEEE+EE      D LEEE+EED+GCFTDEVE+++
Sbjct: 132 QLEHDLVAAIDGSDSEESVQQNQEEEEEEEEE---IHRDELEEEMEEDEGCFTDEVEDDD 191

BLAST of PI0009913 vs. NCBI nr
Match: KAG7019366.1 (hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 97/235 (41.28%), Postives = 118/235 (50.21%), Query Frame = 0

Query: 9   SFNLNNYD--DIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFSVFSLFPHSF- 68
           + N+++Y+  D+ RTSS+ N    VE LKRMVK I    VF LVL LFFS FSLFPHSF 
Sbjct: 7   AINMDSYESLDLDRTSSTSN---NVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFT 66

Query: 69  ------------------------------------------------------------ 128
                                                                       
Sbjct: 67  VYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDASPSSSSSSSSSFGYCSFSHS 126

Query: 129 ---------IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEV 164
                    + A   +  DSD++ E   E+E E E          +EE EED+GCFT+EV
Sbjct: 127 VHHDQFEHDLVADASDGYDSDESEEQEHEDEHEDEHEDEHEE---QEEDEEDEGCFTEEV 186

BLAST of PI0009913 vs. NCBI nr
Match: KAG6583719.1 (hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-17
Identity = 98/239 (41.00%), Postives = 120/239 (50.21%), Query Frame = 0

Query: 11  NLNNYD--DIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFSVFSLFPHSF--- 70
           N+++Y+  D+ RTSS+ N    VE LKRMVK I    VF LVL LFFS FS+FPHSF   
Sbjct: 9   NMDSYESLDLDRTSSTSN---NVERLKRMVKFIVSICVFSLVLALFFSFFSVFPHSFTVY 68

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 69  FSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDASPSSSSSSSSSFGYCSFSHSVH 128

Query: 131 --------IAAAID----EESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFT 164
                   +A A D    +ES+  +  E  +E E+E EE         +EE EED+GCFT
Sbjct: 129 HDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEE---------QEEDEEDEGCFT 188

BLAST of PI0009913 vs. NCBI nr
Match: XP_022142572.1 (nardilysin-like [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-17
Identity = 96/218 (44.04%), Postives = 123/218 (56.42%), Query Frame = 0

Query: 1   MEQHSN----ESSFNLNNYDDIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFS 60
           ME+H      +SS +L N D + RT    N SSKV+ LK MVK +    VFCLV+ LF S
Sbjct: 1   MEEHPQAKDLDSSESL-NLDGMCRT----NWSSKVQRLKGMVKFVVSVCVFCLVVALFLS 60

Query: 61  VFSLFPHSF-----------------------------IAAAIDEESDS-----DQAREG 120
           +FSLFPHSF                             +A +  + S+S      + RE 
Sbjct: 61  LFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNSIPHHHYELREE 120

Query: 121 GEEEEEEKEE---AGICRGDLLEE-------ELEEDDGCFTDEVEEEEEDQKEGKRRELE 164
            +EEE E ++   + I   DL          E E+D+GCFTDEVEEEEE+++  +  ELE
Sbjct: 121 EKEEEVEDDDDDTSAIHSADLAAVGPTSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELE 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LVQ23.4e-3049.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1[more]
A0A6J1CN512.6e-1744.04nardilysin-like OS=Momordica charantia OX=3673 GN=LOC111012652 PE=4 SV=1[more]
A0A6J1EH253.3e-1741.22X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cuc... [more]
A0A6P5WEK03.8e-0547.47histone chaperone ASF1-like OS=Durio zibethinus OX=66656 GN=LOC111274066 PE=4 SV... [more]
A0A1S8AE582.5e-0448.91Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_031736046.14.0e-4959.66uncharacterized protein LOC105434473 [Cucumis sativus] >KAE8652832.1 hypothetica... [more]
XP_038877796.16.7e-2846.70glutamic acid-rich protein-like [Benincasa hispida][more]
KAG7019366.11.1e-1741.28hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583719.14.0e-1741.00hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022142572.15.3e-1744.04nardilysin-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..125
NoneNo IPR availablePANTHERPTHR34947TRANSMEMBRANE PROTEINcoord: 23..63
NoneNo IPR availablePANTHERPTHR34947:SF4PROTEIN, PUTATIVE-RELATEDcoord: 23..63
coord: 69..161
NoneNo IPR availablePANTHERPTHR34947TRANSMEMBRANE PROTEINcoord: 69..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009913.1PI0009913.1mRNA