PI0009777 (gene) Melon (PI 482460) v1

Overview


Name	PI0009777
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 10093356 .. 10094494 (+)
RNA-Seq Expression	PI0009777
Synteny	PI0009777

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTCGACGACTGGGAAGTCCTCGACTGCCATGAAGATCATGAAGAGAAAAGGCACGAAGACCTAGTAATTTCCGGCCAGAAGTTGATCGGTGACACGAAAAAGGAGTTGGAAACCGTCGCGGAGTTTGATGTCGAGGAAGAGGAAAAGGTGAATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACGATCTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGAACGTCGAATACTACAATAGGTTTTTATTTACAAATCAAACTAGCAAAGCATGTATAATTTTGTACTCTCTCGTTACCTTTTTTTTTCTTGGCGATTAGTTTTCTATTAATTATTATTCCCATAGTTGCTGGAGATTACAATGATGGATCAATAGTAATGAAATTGGATTAATGGATCATTCGTAATGGATCTTAATTGTAAACGTTGTTTGATGGCTTTTGATCGTGTTTATCTAACTATTTTGCAAACGTAATCGATCTTTTTTACCTTTACAATTATTGTTATGTTTAGGGTCAGATGGTAATGTTAATGAAATCGGATTAATGGATCGTTCGTAATGAATCTCAATTGCAAACATAGTTTGATGGCTTTTGACCATGTTTATCTAAATATTTTGCAAACGTAATCTGTTTTTCTTACCTTTACACAGTTATTCTTATGTTTAGGGTCAAATGGTAACGATAACAATAATTATGACGTTTTCATATTTCTCTTGCTGATTTTCATAATTACCATTTGACAACAGGTAATGATAACAATACTTTGATGTAATTTTCAATTGTTGGATTGACTACCTTTGGTTGCTCAATCAGATTGTGGGTTTTGATTACAGACTTAAAAATAGGCACCATATCTCATTATGATTATGAAACACTGATATAATAGCCACTGCATTGTTAAAGTTCATCGAAGAAAAAATAGCACAAAACAAAATAATGACATGCAACCAAACGAAAGATTTTGAAAAAGAAAAATTCATTTTTAGACATTATACACTAAACAAAACATTGAGTGTATCTTTTATCATATTCGTG

mRNA sequence

ATGGGACTCGACGACTGGGAAGTCCTCGACTGCCATGAAGATCATGAAGAGAAAAGGCACGAAGACCTAGTAATTTCCGGCCAGAAGTTGATCGGTGACACGAAAAAGGAGTTGGAAACCGTCGCGGAGTTTGATGTCGAGGAAGAGGAAAAGGTGAATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACGATCTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTAATGATAACAATACTTTGATGTAATTTTCAATTGTTGGATTGACTACCTTTGGTTGCTCAATCAGATTGTGGGTTTTGATTACAGACTTAAAAATAGGCACCATATCTCATTATGATTATGAAACACTGATATAATAGCCACTGCATTGTTAAAGTTCATCGAAGAAAAAATAGCACAAAACAAAATAATGACATGCAACCAAACGAAAGATTTTGAAAAAGAAAAATTCATTTTTAGACATTATACACTAAACAAAACATTGAGTGTATCTTTTATCATATTCGTG

Coding sequence (CDS)

ATGGGACTCGACGACTGGGAAGTCCTCGACTGCCATGAAGATCATGAAGAGAAAAGGCACGAAGACCTAGTAATTTCCGGCCAGAAGTTGATCGGTGACACGAAAAAGGAGTTGGAAACCGTCGCGGAGTTTGATGTCGAGGAAGAGGAAAAGGTGAATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACGATCTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTAATGATAACAATACTTTGATGTAA

Protein sequence

MGLDDWEVLDCHEDHEEKRHEDLVISGQKLIGDTKKELETVAEFDVEEEEKVNSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGNDNNTLM

Homology

[Close]

BLAST of PI0009777 vs. ExPASy TrEMBL
Match: A0A0A0LG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.9e-43
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGLDDWEVLDCHEDHEEKR---HEDLVISGQKLIGDTKKELETVAEFDVEEEEKVNSRGG 60
           MGLDDWE+LDCHEDH++++   HE++VISGQKLIGDTK E+E VAEFDVEEEEKV+SRGG
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60

Query: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG 100
           MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG
Sbjct: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG 102

[Close]

BLAST of PI0009777 vs. ExPASy TrEMBL
Match: A0A5D3D5E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00740 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MGLDDWEVLDCHEDHEEK-RHEDLVISGQKLIGDTKKELETVAEFDVEEEEKVNSRGGMD 60
           MGLDDWE+LDCHED EEK RHE+ VISGQKLI DTKKELE VAEF+VEEEEK NSR GMD
Sbjct: 1   MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD 60

Query: 61  MAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG 100
           MA EK+KQ GR VVCSFGIAVAATICSVLLGSHSHHHGGG
Sbjct: 61  MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGG 100

[Close]

BLAST of PI0009777 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_001232 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 8.1e-43
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGLDDWEVLDCHEDHEEKR---HEDLVISGQKLIGDTKKELETVAEFDVEEEEKVNSRGG 60
           MGLDDWE+LDCHEDH++++   HE++VISGQKLIGDTK E+E VAEFDVEEEEKV+SRGG
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60

Query: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG 100
           MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG
Sbjct: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG 102

[Close]

BLAST of PI0009777 vs. NCBI nr
Match: KAA0057194.1 (hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK18767.1 hypothetical protein E5676_scaffold257G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-38
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MGLDDWEVLDCHEDHEEK-RHEDLVISGQKLIGDTKKELETVAEFDVEEEEKVNSRGGMD 60
           MGLDDWE+LDCHED EEK RHE+ VISGQKLI DTKKELE VAEF+VEEEEK NSR GMD
Sbjct: 1   MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD 60

Query: 61  MAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGG 100
           MA EK+KQ GR VVCSFGIAVAATICSVLLGSHSHHHGGG
Sbjct: 61  MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGG 100

The following BLAST results are available for this feature:

BLAST of PI0009777 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG95	3.9e-43	86.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1	[more]
A0A5D3D5E0	1.0e-38	86.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0009777 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59752.1	8.1e-43	86.27	hypothetical protein Csa_001232 [Cucumis sativus]	[more]
KAA0057194.1	2.1e-38	86.00	hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK1876...	[more]

BLAST of PI0009777 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009777.1	PI0009777.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane