PI0008383 (gene) Melon (PI 482460) v1

Overview


Name	PI0008383
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr03: 8803431 .. 8803831 (+)
RNA-Seq Expression	PI0008383
Synteny	PI0008383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTGCAGCAAAGAGTGGCAAGAAAGGAAAATGTAACTTTGCAATGAACTATACTAATTCCTCTTCTTCCAACCTGTTAGTGTATAAACAGTAAACATGAATCTAAAACTGTCAACTTCAAGACCAAAAGGCTTGACTAAATAAAGATATATCCATAAGAACATTTTCTTTCATGAGAATATAATAATACTAACAATTGTTTCCTAAGCAAGAATCCCTGGACTGGGCAAGCGAGATTTGCCTTCAAGTAGCAGTAATCTATCAGAATTACAGATAGTCGAGATTTGCACAGATATGCTAGTAGTAACATTGGATGATCAAGAAATGTGCTTGAAGGATCAGTATACACAAGAGGGAAAAACAACCTCAGAGTCAGAGATGTTGCAACTTCTCTAA

mRNA sequence

ATGGATACTGCAGCAAAGAGTGGCAAGAAAGGAAAATGTAACTTTGCAATGAACTATACTAATTCCTCTTCTTCCAACCTAATCCCTGGACTGGGCAAGCGAGATTTGCCTTCAAGTAGCAGTAATCTATCAGAATTACAGATAGTCGAGATTTGCACAGATATGCTAGTAGTAACATTGGATGATCAAGAAATGTGCTTGAAGGATCAGTATACACAAGAGGGAAAAACAACCTCAGAGTCAGAGATGTTGCAACTTCTCTAA

Coding sequence (CDS)

ATGGATACTGCAGCAAAGAGTGGCAAGAAAGGAAAATGTAACTTTGCAATGAACTATACTAATTCCTCTTCTTCCAACCTAATCCCTGGACTGGGCAAGCGAGATTTGCCTTCAAGTAGCAGTAATCTATCAGAATTACAGATAGTCGAGATTTGCACAGATATGCTAGTAGTAACATTGGATGATCAAGAAATGTGCTTGAAGGATCAGTATACACAAGAGGGAAAAACAACCTCAGAGTCAGAGATGTTGCAACTTCTCTAA

Protein sequence

MDTAAKSGKKGKCNFAMNYTNSSSSNLIPGLGKRDLPSSSSNLSELQIVEICTDMLVVTLDDQEMCLKDQYTQEGKTTSESEMLQLL

Homology

[Close]

BLAST of PI0008383 vs. ExPASy TrEMBL
Match: A0A0A0K9J1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057090 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 10 KGKCNFAMNYTNSSSSNLI-----PGLGKRDLPSSSSN-LSELQIVEICTDMLVVTLDDQ 69
          +GKCNFA+NYTNSSSSNL      P  G+ +  +SSS+ LSELQIVEICTDML +T DD+
Sbjct: 12 QGKCNFALNYTNSSSSNLCFLSNNPWSGRANSSASSSSILSELQIVEICTDMLEITWDDE 71

Query: 70 EMCLKDQYTQEGKTTSESEMLQLL 88
          EMCLKDQYTQEGKTTSESEMLQLL
Sbjct: 72 EMCLKDQYTQEGKTTSESEMLQLL 95

[Close]

BLAST of PI0008383 vs. NCBI nr
Match: KGN46143.1 (hypothetical protein Csa_005463 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-21
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 10 KGKCNFAMNYTNSSSSNLI-----PGLGKRDLPSSSSN-LSELQIVEICTDMLVVTLDDQ 69
          +GKCNFA+NYTNSSSSNL      P  G+ +  +SSS+ LSELQIVEICTDML +T DD+
Sbjct: 12 QGKCNFALNYTNSSSSNLCFLSNNPWSGRANSSASSSSILSELQIVEICTDMLEITWDDE 71

Query: 70 EMCLKDQYTQEGKTTSESEMLQLL 88
          EMCLKDQYTQEGKTTSESEMLQLL
Sbjct: 72 EMCLKDQYTQEGKTTSESEMLQLL 95

The following BLAST results are available for this feature:

BLAST of PI0008383 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9J1	2.7e-21	73.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057090 PE=4 SV=1	[more]

BLAST of PI0008383 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46143.1	5.5e-21	73.81	hypothetical protein Csa_005463 [Cucumis sativus]	[more]

BLAST of PI0008383 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008383.1	PI0008383.1	mRNA