PI0007086 (gene) Melon (PI 482460) v1

Overview


Name	PI0007086
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr10: 4650156 .. 4650512 (+)
RNA-Seq Expression	PI0007086
Synteny	PI0007086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTACTTCATCGAACGCTTCTTATCTGGAAATAGGCACCTTACAATCCTTACTGACAAGAATCAACCAAGAGACGATGGTCTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTTCTTTTGCAGATTTTTGGCCAAACTTAGACAACAGCTCGATTCTTCCCAAGCTACCTGTGGAGATACCTTTGTCTCAGGGAAAAAATGCATGGATCCTGCAATCTTCTATCCATAATGAGGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGTATAATTGAAGGCCAAACCCGTTGGGGTGCCGTGACTAAAGTCCCAGGAGAATTCTGCTTTACTAACTGTTATTGGGAGTGA

mRNA sequence

ATGGTTTACTTCATCGAACGCTTCTTATCTGGAAATAGGCACCTTACAATCCTTACTGACAAGAATCAACCAAGAGACGATGGTCTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTTCTTTTGCAGATTTTTGGCCAAACTTAGACAACAGCTCGATTCTTCCCAAGCTACCTGTGGAGATACCTTTGTCTCAGGGAAAAAATGCATGGATCCTGCAATCTTCTATCCATAATGAGGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGTATAATTGAAGGCCAAACCCGTTGGGGTGCCGTGACTAAAGTCCCAGGAGAATTCTGCTTTACTAACTGTTATTGGGAGTGA

Coding sequence (CDS)

ATGGTTTACTTCATCGAACGCTTCTTATCTGGAAATAGGCACCTTACAATCCTTACTGACAAGAATCAACCAAGAGACGATGGTCTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTTCTTTTGCAGATTTTTGGCCAAACTTAGACAACAGCTCGATTCTTCCCAAGCTACCTGTGGAGATACCTTTGTCTCAGGGAAAAAATGCATGGATCCTGCAATCTTCTATCCATAATGAGGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGTATAATTGAAGGCCAAACCCGTTGGGGTGCCGTGACTAAAGTCCCAGGAGAATTCTGCTTTACTAACTGTTATTGGGAGTGA

Protein sequence

MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVEIPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE

Homology

[Close]

BLAST of PI0007086 vs. ExPASy TrEMBL
Match: A0A5A7TZN9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001160 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 91/118 (77.12%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEKS  G+FAD WP+LDN+S+LP+L VE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           IPLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG +TKVPGEFCFT+CYWE
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWE 134

[Close]

BLAST of PI0007086 vs. ExPASy TrEMBL
Match: A0A5D3C267 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001330 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 91/118 (77.12%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEKS  G+FAD WP+LDN+S+LP+L VE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           IPLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG +TKVPGEFCFT+CYWE
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWE 134

[Close]

BLAST of PI0007086 vs. ExPASy TrEMBL
Match: A0A5A7UET3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001110 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEK   G+FAD WP LDN+S+LP+L VE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           IPLS+GK+AWILQSSIHNEAPN+ R LTLG R+IEGQTRWG VTKVPGEFCFT+CYWE
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 118

[Close]

BLAST of PI0007086 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEK   G+FAD WP LDN+S+LP+L VE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           +PLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG VTKVPGEFCFT+CYWE
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 118

[Close]

BLAST of PI0007086 vs. ExPASy TrEMBL
Match: A0A5A7TFC8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00910 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.7e-50
Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEK   G+FAD WP LDN+S+LP+L VE
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           +PLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG VTKVPGEFCFT+CYWE
Sbjct: 77  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 134

[Close]

BLAST of PI0007086 vs. NCBI nr
Match: TYK04516.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50
Identity = 91/118 (77.12%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEKS  G+FAD WP+LDN+S+LP+L VE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           IPLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG +TKVPGEFCFT+CYWE
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWE 134

[Close]

BLAST of PI0007086 vs. NCBI nr
Match: KAA0046821.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50
Identity = 91/118 (77.12%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEKS  G+FAD WP+LDN+S+LP+L VE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           IPLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG +TKVPGEFCFT+CYWE
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWE 134

[Close]

BLAST of PI0007086 vs. NCBI nr
Match: KAA0053734.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 3.4e-50
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEK   G+FAD WP LDN+S+LP+L VE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           IPLS+GK+AWILQSSIHNEAPN+ R LTLG R+IEGQTRWG VTKVPGEFCFT+CYWE
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 118

[Close]

BLAST of PI0007086 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-50
Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEK   G+FAD WP LDN+S+LP+L VE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           +PLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG VTKVPGEFCFT+CYWE
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 118

[Close]

BLAST of PI0007086 vs. NCBI nr
Match: TYK19639.1 (hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 7.6e-50
Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MVYFIERFLSGNRHLTILTDKNQPRDDGLSLLVEKSLTGSFADFWPNLDNSSILPKLPVE 60
           MVYF ERFLSG RHL IL+D+NQPR+DGLSL+VEK   G+FAD WP LDN+S+LP+L VE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWILQSSIHNEAPNANRVLTLGHRIIEGQTRWGAVTKVPGEFCFTNCYWE 119
           +PLS+GK+AW+LQSSIHNEAPN+ R LTLG R+IEGQTRWG VTKVPGEFCFT+CYWE
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 118

The following BLAST results are available for this feature:

BLAST of PI0007086 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZN9	1.3e-50	77.12	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3C267	1.3e-50	77.12	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UET3	1.7e-50	77.97	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TX42	2.8e-50	76.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TFC8	3.7e-50	76.27	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of PI0007086 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04516.1	2.6e-50	77.12	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0046821.1	2.6e-50	77.12	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0053734.1	3.4e-50	77.97	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0047478.1	5.9e-50	76.27	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
TYK19639.1	7.6e-50	76.27	hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]	[more]

BLAST of PI0007086 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007086.1	PI0007086.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane