Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCCATCACCTCCAAATTGTTCATATCTCTAATCTATATAAAGAGAATGAGTTCCAAGGCCTTCATCTTGCTCGGTCTTCTCTTTGCCGTTGTCGTCCTCTTTTCCTCTGAGGCGATAACAGTTACAGCAAGGGATGCGAAATTCAGTGAGTTTCTTTTTTTCAAACCTACGATGCGATGTACACTCTTTACTTTTAACTCCTTTAATTAGTGTTATGTACTATATCACAACTACAAATTTGGGCTTTTATGACGAAATAATTTTTTTATTTAGTAGATGTTTATGACAAAAAAAACAGTCAATAAAATTTTTAATTACAGCTTAAAATCAGTATAGGTTTATATTAAAGTTGACATATAAAAATATTAATTATAAAAACACTTTTGTTGACACAAAAATACGTAGGTTTCGTGTTTTTGAATTAGTTGATGGACAATAAACATCAACAAAAACTATTTGTACTTGACGTTATTTTTTGCTGTCAACAAAATTATTTTTGTTGATGTTAAAGTTTTGTTGACACATTACTTCATTGATATTTTTTTTGCCATCAACAAAGATCTTGGTTGAAATTTTTAGTTATCAATAAAAGTCAAATTTGTAGTAGTATGTGTTGATTTTATTAATGATTTACTTTGTAGAAGAAGCTACGATGGAAACTGGTGAAGTTGACGATGTCGAGCGTCACAATTATGGAGGAGCCCATTCTCGGAACCTTGCCGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTCCGCGGCCGTTGCATCAGGTGCTGCAGTTTTGCTGGTGAGGCTGCTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACTTCAAATAAAATGGCTTCATTTTCTGAAGTTGGTGTTTGTAGTTTGAGTGTTTGTAAGTTTGAATAAATGCATATGCCCTGTGAGATTAATTATTATATAAGTTAATCATATTACAATGAAAAACGTATAATATGGTTCTGACCAAAGAAATGTGGCTGCTTAATTATTTTATATTAACTATCAATGCTGTCTAAATAATTAAAGATGGTTTTTCTTATATAAAAAATTGGGGAATTTGAAGTAA
mRNA sequence
ACCCCATCACCTCCAAATTGTTCATATCTCTAATCTATATAAAGAGAATGAGTTCCAAGGCCTTCATCTTGCTCGGTCTTCTCTTTGCCGTTGTCGTCCTCTTTTCCTCTGAGGCGATAACAGTTACAGCAAGGGATGCGAAATTCAAAGAAGCTACGATGGAAACTGGTGAAGTTGACGATGTCGAGCGTCACAATTATGGAGGAGCCCATTCTCGGAACCTTGCCGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTCCGCGGCCGTTGCATCAGGTGCTGCAGTTTTGCTGGTGAGGCTGCTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACTTCAAATAAAATGGCTTCATTTTCTGAAGTTGGTGTTTGTAGTTTGAGTGTTTGTAAGTTTGAATAAATGCATATGCCCTGTGAGATTAATTATTATATAAGTTAATCATATTACAATGAAAAACGTATAATATGGTTCTGACCAAAGAAATGTGGCTGCTTAATTATTTTATATTAACTATCAATGCTGTCTAAATAATTAAAGATGGTTTTTCTTATATAAAAAATTGGGGAATTTGAAGTAA
Coding sequence (CDS)
ATGAGTTCCAAGGCCTTCATCTTGCTCGGTCTTCTCTTTGCCGTTGTCGTCCTCTTTTCCTCTGAGGCGATAACAGTTACAGCAAGGGATGCGAAATTCAAAGAAGCTACGATGGAAACTGGTGAAGTTGACGATGTCGAGCGTCACAATTATGGAGGAGCCCATTCTCGGAACCTTGCCGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTCCGCGGCCGTTGCATCAGGTGCTGCAGTTTTGCTGGTGAGGCTGCTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAA
Protein sequence
MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLAECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN
Homology
BLAST of PI0006815 vs. ExPASy Swiss-Prot
Match:
P23137 (Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1)
HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 41/111 (36.94%), Postives = 52/111 (46.85%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAIT-VTARDAKFKEATMETG-EVDDVERHN-------Y 60
M SKAF+ LGL A L SSE + A + + E G +VD +N Y
Sbjct: 1 MGSKAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDGENGVDVDGRGGYNDVGGDGYY 60
Query: 61 GGAHSRNLAEC-LHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
GG R GC GCC C RCCS+AGEA +D +A+P+N
Sbjct: 61 GGGRGRGGGGYKRRGCRYGCCRKGYNGCKRCCSYAGEA--MDKVTEAQPHN 109
BLAST of PI0006815 vs. ExPASy TrEMBL
Match:
A0A0A0K5A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 5.2e-45
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
MSSK+FILLGLLFA VVLFSSEAITVTARDAK KEATMETGEVD+VERH+YGGAHSRNLA
Sbjct: 1 MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60
Query: 61 ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
ECLHGCNRGCCECFRGRCIRCCSFAGEA IVDGKPQAKPNN
Sbjct: 61 ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100
BLAST of PI0006815 vs. ExPASy TrEMBL
Match:
A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 5.5e-10
Identity = 58/131 (44.27%), Postives = 70/131 (53.44%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVE-------RHNYGG 60
M+SKAFILLGLLFAVVVL SS+ VTARD K E MET V+D + +YGG
Sbjct: 1 MNSKAFILLGLLFAVVVLLSSD---VTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGG 60
Query: 61 AHSRNLAECLHG-----------------------CNRGCCECFRGRCIRCCSFAGEAAI 102
+ R + G C+ GCC + G C RCCS+AGEA
Sbjct: 61 GYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG-YHGSCGRCCSYAGEA-- 120
BLAST of PI0006815 vs. ExPASy TrEMBL
Match:
A0A6J1C3E0 (glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 46/105 (43.81%), Postives = 49/105 (46.67%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATM---ETGEVDDVERHNYGGAHSR 60
MSSK I LGLLFAVVVL SSE +T TARD K E M G DD H+ H R
Sbjct: 1 MSSKTLIFLGLLFAVVVLLSSEEVTATARDLKSVEEVMTETNNGIEDDKRGHHGHHHHHR 60
Query: 61 NLAECLHGCNRGCCECFRGRCIRCCSFAGEAAIVD-GKPQAKPNN 102
C H CSFA E VD + Q KPNN
Sbjct: 61 RRRHCHH---------------HHCSFADEDEAVDEEEAQTKPNN 90
BLAST of PI0006815 vs. ExPASy TrEMBL
Match:
A0A6J1JMI7 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 48/110 (43.64%), Postives = 56/110 (50.91%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAK-FKEATMET---GEVDDVER-----HNY 60
M+SKAFI+LGLLFAVV+L SSE T TAR K +EA MET G DD R H +
Sbjct: 1 MNSKAFIILGLLFAVVILLSSEEATATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
Query: 61 GGAHSRNLAECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
H + C HGC+ A E V+ PQAKPNN
Sbjct: 61 KHHHRHHHRHCRHGCS-----------------ADED--VNEDPQAKPNN 91
BLAST of PI0006815 vs. ExPASy TrEMBL
Match:
A0A6A1UEW3 (Glycine-rich protein OS=Morella rubra OX=262757 GN=CJ030_MR0G027006 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 6.9e-05
Identity = 50/135 (37.04%), Postives = 62/135 (45.93%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARD------AKFKEATMETGEVDDVE------- 60
M SKAF+LLGL+FA+V+L SSE V ARD + EA EVDD +
Sbjct: 1 MGSKAFLLLGLMFAIVLLISSE---VAARDLAETTSEQHAEAATMGSEVDDAKYQGGGYG 60
Query: 61 --------------------RHNYGGAHSRNLAECLHGCNRGCCECFRGR-CIRCCSFAG 102
R YGG C +GC C + GR C RCCS+AG
Sbjct: 61 GGPGGGYGGGPGGGYGGGPGRGGYGGGGGGRERGCYYGC---CRRAYYGRGCERCCSYAG 120
BLAST of PI0006815 vs. NCBI nr
Match:
XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])
HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
MSSK+FILLGLLFA VVLFSSEAITVTARDAK KEATMETGEVD+VERH+YGGAHSRNLA
Sbjct: 1 MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60
Query: 61 ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
ECLHGCNRGCCECFRGRCIRCCSFAGEA IVDGKPQAKPNN
Sbjct: 61 ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100
BLAST of PI0006815 vs. NCBI nr
Match:
XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])
HSP 1 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
MSSKAFI LGLLFA+VVLFSSE +TV ARD KF+EA METGEVDDVERH +GG H+RNLA
Sbjct: 1 MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKFEEAMMETGEVDDVERHGFGGGHARNLA 60
Query: 61 ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
ECLHGCN GCCECFRGRCIRCCSFAGEA VD KPQAKPNN
Sbjct: 61 ECLHGCNHGCCECFRGRCIRCCSFAGEA--VDVKPQAKPNN 99
BLAST of PI0006815 vs. NCBI nr
Match:
XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])
HSP 1 Score: 167.2 bits (422), Expect = 7.5e-38
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
MSSKAFI LGLLFA+VVLFSSE +TV ARD KF EA METGEVDDVERH +GG H+RNLA
Sbjct: 1 MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKF-EAMMETGEVDDVERHGFGGGHARNLA 60
Query: 61 ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
ECLHGCN GCCECFRGRCIRCCSFAGEA VD KPQAKPNN
Sbjct: 61 ECLHGCNHGCCECFRGRCIRCCSFAGEA--VDVKPQAKPNN 98
BLAST of PI0006815 vs. NCBI nr
Match:
KAE8645721.1 (hypothetical protein Csa_020383 [Cucumis sativus])
HSP 1 Score: 78.2 bits (191), Expect = 4.6e-11
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTA-RDAKFKEATMETGEVDDVERHNYGGAHSRNL 60
M+SKAFILLGLLFA V+L E VTA D K EA +T E++DV+ H+ GG +L
Sbjct: 1 MNSKAFILLGLLFAAVIL---EVTAVTATNDIKSNEAFKQTDEINDVKHHDLGG-EDASL 60
Query: 61 AECLHGCNRGCCECFRGRCIRCC 83
A+C H C++GCC+C G C++CC
Sbjct: 61 AQCHHHCHKGCCKCSHGHCVKCC 79
BLAST of PI0006815 vs. NCBI nr
Match:
XP_022136254.1 (glycine-rich protein 3 short isoform-like [Momordica charantia])
HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 58/131 (44.27%), Postives = 70/131 (53.44%), Query Frame = 0
Query: 1 MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVE-------RHNYGG 60
M+SKAFILLGLLFAVVVL SS+ VTARD K E MET V+D + +YGG
Sbjct: 1 MNSKAFILLGLLFAVVVLLSSD---VTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGG 60
Query: 61 AHSRNLAECLHG-----------------------CNRGCCECFRGRCIRCCSFAGEAAI 102
+ R + G C+ GCC + G C RCCS+AGEA
Sbjct: 61 GYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG-YHGSCGRCCSYAGEA-- 120
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P23137 | 5.6e-04 | 36.94 | Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K5A1 | 5.2e-45 | 94.06 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1 | [more] |
| A0A6J1C3T3 | 5.5e-10 | 44.27 | glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1... | [more] |
| A0A6J1C3E0 | 3.1e-05 | 43.81 | glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 P... | [more] |
| A0A6J1JMI7 | 4.1e-05 | 43.64 | glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4... | [more] |
| A0A6A1UEW3 | 6.9e-05 | 37.04 | Glycine-rich protein OS=Morella rubra OX=262757 GN=CJ030_MR0G027006 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_004144531.1 | 1.1e-44 | 94.06 | glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203... | [more] |
| XP_038888333.1 | 2.3e-39 | 84.16 | glycine-rich protein-like isoform X1 [Benincasa hispida] | [more] |
| XP_038888334.1 | 7.5e-38 | 84.16 | glycine-rich protein-like isoform X2 [Benincasa hispida] | [more] |
| KAE8645721.1 | 4.6e-11 | 51.81 | hypothetical protein Csa_020383 [Cucumis sativus] | [more] |
| XP_022136254.1 | 1.1e-09 | 44.27 | glycine-rich protein 3 short isoform-like [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
