PI0006815 (gene) Melon (PI 482460) v1

Overview


Name	PI0006815
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Glycine-rich protein
Location	chr01: 3780325 .. 3781437 (+)
RNA-Seq Expression	PI0006815
Synteny	PI0006815

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCCATCACCTCCAAATTGTTCATATCTCTAATCTATATAAAGAGAATGAGTTCCAAGGCCTTCATCTTGCTCGGTCTTCTCTTTGCCGTTGTCGTCCTCTTTTCCTCTGAGGCGATAACAGTTACAGCAAGGGATGCGAAATTCAGTGAGTTTCTTTTTTTCAAACCTACGATGCGATGTACACTCTTTACTTTTAACTCCTTTAATTAGTGTTATGTACTATATCACAACTACAAATTTGGGCTTTTATGACGAAATAATTTTTTTATTTAGTAGATGTTTATGACAAAAAAAACAGTCAATAAAATTTTTAATTACAGCTTAAAATCAGTATAGGTTTATATTAAAGTTGACATATAAAAATATTAATTATAAAAACACTTTTGTTGACACAAAAATACGTAGGTTTCGTGTTTTTGAATTAGTTGATGGACAATAAACATCAACAAAAACTATTTGTACTTGACGTTATTTTTTGCTGTCAACAAAATTATTTTTGTTGATGTTAAAGTTTTGTTGACACATTACTTCATTGATATTTTTTTTGCCATCAACAAAGATCTTGGTTGAAATTTTTAGTTATCAATAAAAGTCAAATTTGTAGTAGTATGTGTTGATTTTATTAATGATTTACTTTGTAGAAGAAGCTACGATGGAAACTGGTGAAGTTGACGATGTCGAGCGTCACAATTATGGAGGAGCCCATTCTCGGAACCTTGCCGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTCCGCGGCCGTTGCATCAGGTGCTGCAGTTTTGCTGGTGAGGCTGCTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACTTCAAATAAAATGGCTTCATTTTCTGAAGTTGGTGTTTGTAGTTTGAGTGTTTGTAAGTTTGAATAAATGCATATGCCCTGTGAGATTAATTATTATATAAGTTAATCATATTACAATGAAAAACGTATAATATGGTTCTGACCAAAGAAATGTGGCTGCTTAATTATTTTATATTAACTATCAATGCTGTCTAAATAATTAAAGATGGTTTTTCTTATATAAAAAATTGGGGAATTTGAAGTAA

mRNA sequence

ACCCCATCACCTCCAAATTGTTCATATCTCTAATCTATATAAAGAGAATGAGTTCCAAGGCCTTCATCTTGCTCGGTCTTCTCTTTGCCGTTGTCGTCCTCTTTTCCTCTGAGGCGATAACAGTTACAGCAAGGGATGCGAAATTCAAAGAAGCTACGATGGAAACTGGTGAAGTTGACGATGTCGAGCGTCACAATTATGGAGGAGCCCATTCTCGGAACCTTGCCGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTCCGCGGCCGTTGCATCAGGTGCTGCAGTTTTGCTGGTGAGGCTGCTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACTTCAAATAAAATGGCTTCATTTTCTGAAGTTGGTGTTTGTAGTTTGAGTGTTTGTAAGTTTGAATAAATGCATATGCCCTGTGAGATTAATTATTATATAAGTTAATCATATTACAATGAAAAACGTATAATATGGTTCTGACCAAAGAAATGTGGCTGCTTAATTATTTTATATTAACTATCAATGCTGTCTAAATAATTAAAGATGGTTTTTCTTATATAAAAAATTGGGGAATTTGAAGTAA

Coding sequence (CDS)

ATGAGTTCCAAGGCCTTCATCTTGCTCGGTCTTCTCTTTGCCGTTGTCGTCCTCTTTTCCTCTGAGGCGATAACAGTTACAGCAAGGGATGCGAAATTCAAAGAAGCTACGATGGAAACTGGTGAAGTTGACGATGTCGAGCGTCACAATTATGGAGGAGCCCATTCTCGGAACCTTGCCGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTCCGCGGCCGTTGCATCAGGTGCTGCAGTTTTGCTGGTGAGGCTGCTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAA

Protein sequence

MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLAECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN

Homology

[Close]

BLAST of PI0006815 vs. ExPASy Swiss-Prot
Match: P23137 (Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 41/111 (36.94%), Postives = 52/111 (46.85%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAIT-VTARDAKFKEATMETG-EVDDVERHN-------Y 60
           M SKAF+ LGL  A   L SSE +    A  +   +   E G +VD    +N       Y
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDGENGVDVDGRGGYNDVGGDGYY 60

Query: 61  GGAHSRNLAEC-LHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
           GG   R        GC  GCC      C RCCS+AGEA  +D   +A+P+N
Sbjct: 61  GGGRGRGGGGYKRRGCRYGCCRKGYNGCKRCCSYAGEA--MDKVTEAQPHN 109

[Close]

BLAST of PI0006815 vs. ExPASy TrEMBL
Match: A0A0A0K5A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.2e-45
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
           MSSK+FILLGLLFA VVLFSSEAITVTARDAK KEATMETGEVD+VERH+YGGAHSRNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
           ECLHGCNRGCCECFRGRCIRCCSFAGEA IVDGKPQAKPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of PI0006815 vs. ExPASy TrEMBL
Match: A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.5e-10
Identity = 58/131 (44.27%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVE-------RHNYGG 60
           M+SKAFILLGLLFAVVVL SS+   VTARD K  E  MET  V+D +         +YGG
Sbjct: 1   MNSKAFILLGLLFAVVVLLSSD---VTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGG 60

Query: 61  AHSRNLAECLHG-----------------------CNRGCCECFRGRCIRCCSFAGEAAI 102
            + R  +    G                       C+ GCC  + G C RCCS+AGEA  
Sbjct: 61  GYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG-YHGSCGRCCSYAGEA-- 120

[Close]

BLAST of PI0006815 vs. ExPASy TrEMBL
Match: A0A6J1C3E0 (glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 46/105 (43.81%), Postives = 49/105 (46.67%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATM---ETGEVDDVERHNYGGAHSR 60
           MSSK  I LGLLFAVVVL SSE +T TARD K  E  M     G  DD   H+    H R
Sbjct: 1   MSSKTLIFLGLLFAVVVLLSSEEVTATARDLKSVEEVMTETNNGIEDDKRGHHGHHHHHR 60

Query: 61  NLAECLHGCNRGCCECFRGRCIRCCSFAGEAAIVD-GKPQAKPNN 102
               C H                 CSFA E   VD  + Q KPNN
Sbjct: 61  RRRHCHH---------------HHCSFADEDEAVDEEEAQTKPNN 90

[Close]

BLAST of PI0006815 vs. ExPASy TrEMBL
Match: A0A6J1JMI7 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 48/110 (43.64%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAK-FKEATMET---GEVDDVER-----HNY 60
           M+SKAFI+LGLLFAVV+L SSE  T TAR  K  +EA MET   G  DD  R     H +
Sbjct: 1   MNSKAFIILGLLFAVVILLSSEEATATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61  GGAHSRNLAECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
              H  +   C HGC+                 A E   V+  PQAKPNN
Sbjct: 61  KHHHRHHHRHCRHGCS-----------------ADED--VNEDPQAKPNN 91

[Close]

BLAST of PI0006815 vs. ExPASy TrEMBL
Match: A0A6A1UEW3 (Glycine-rich protein OS=Morella rubra OX=262757 GN=CJ030_MR0G027006 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-05
Identity = 50/135 (37.04%), Postives = 62/135 (45.93%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARD------AKFKEATMETGEVDDVE------- 60
           M SKAF+LLGL+FA+V+L SSE   V ARD       +  EA     EVDD +       
Sbjct: 1   MGSKAFLLLGLMFAIVLLISSE---VAARDLAETTSEQHAEAATMGSEVDDAKYQGGGYG 60

Query: 61  --------------------RHNYGGAHSRNLAECLHGCNRGCCECFRGR-CIRCCSFAG 102
                               R  YGG        C +GC   C   + GR C RCCS+AG
Sbjct: 61  GGPGGGYGGGPGGGYGGGPGRGGYGGGGGGRERGCYYGC---CRRAYYGRGCERCCSYAG 120

[Close]

BLAST of PI0006815 vs. NCBI nr
Match: XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
           MSSK+FILLGLLFA VVLFSSEAITVTARDAK KEATMETGEVD+VERH+YGGAHSRNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
           ECLHGCNRGCCECFRGRCIRCCSFAGEA IVDGKPQAKPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of PI0006815 vs. NCBI nr
Match: XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
           MSSKAFI LGLLFA+VVLFSSE +TV ARD KF+EA METGEVDDVERH +GG H+RNLA
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKFEEAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
           ECLHGCN GCCECFRGRCIRCCSFAGEA  VD KPQAKPNN
Sbjct: 61  ECLHGCNHGCCECFRGRCIRCCSFAGEA--VDVKPQAKPNN 99

[Close]

BLAST of PI0006815 vs. NCBI nr
Match: XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 7.5e-38
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVERHNYGGAHSRNLA 60
           MSSKAFI LGLLFA+VVLFSSE +TV ARD KF EA METGEVDDVERH +GG H+RNLA
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKF-EAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAAIVDGKPQAKPNN 102
           ECLHGCN GCCECFRGRCIRCCSFAGEA  VD KPQAKPNN
Sbjct: 61  ECLHGCNHGCCECFRGRCIRCCSFAGEA--VDVKPQAKPNN 98

[Close]

BLAST of PI0006815 vs. NCBI nr
Match: KAE8645721.1 (hypothetical protein Csa_020383 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 4.6e-11
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MSSKAFILLGLLFAVVVLFSSEAITVTA-RDAKFKEATMETGEVDDVERHNYGGAHSRNL 60
          M+SKAFILLGLLFA V+L   E   VTA  D K  EA  +T E++DV+ H+ GG    +L
Sbjct: 1  MNSKAFILLGLLFAAVIL---EVTAVTATNDIKSNEAFKQTDEINDVKHHDLGG-EDASL 60

Query: 61 AECLHGCNRGCCECFRGRCIRCC 83
          A+C H C++GCC+C  G C++CC
Sbjct: 61 AQCHHHCHKGCCKCSHGHCVKCC 79

[Close]

BLAST of PI0006815 vs. NCBI nr
Match: XP_022136254.1 (glycine-rich protein 3 short isoform-like [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 58/131 (44.27%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 1   MSSKAFILLGLLFAVVVLFSSEAITVTARDAKFKEATMETGEVDDVE-------RHNYGG 60
           M+SKAFILLGLLFAVVVL SS+   VTARD K  E  MET  V+D +         +YGG
Sbjct: 1   MNSKAFILLGLLFAVVVLLSSD---VTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGG 60

Query: 61  AHSRNLAECLHG-----------------------CNRGCCECFRGRCIRCCSFAGEAAI 102
            + R  +    G                       C+ GCC  + G C RCCS+AGEA  
Sbjct: 61  GYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG-YHGSCGRCCSYAGEA-- 120

The following BLAST results are available for this feature:

BLAST of PI0006815 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23137	5.6e-04	36.94	Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1	[more]

BLAST of PI0006815 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5A1	5.2e-45	94.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1	[more]
A0A6J1C3T3	5.5e-10	44.27	glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1C3E0	3.1e-05	43.81	glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 P...	[more]
A0A6J1JMI7	4.1e-05	43.64	glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4...	[more]
A0A6A1UEW3	6.9e-05	37.04	Glycine-rich protein OS=Morella rubra OX=262757 GN=CJ030_MR0G027006 PE=4 SV=1	[more]

BLAST of PI0006815 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144531.1	1.1e-44	94.06	glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203...	[more]
XP_038888333.1	2.3e-39	84.16	glycine-rich protein-like isoform X1 [Benincasa hispida]	[more]
XP_038888334.1	7.5e-38	84.16	glycine-rich protein-like isoform X2 [Benincasa hispida]	[more]
KAE8645721.1	4.6e-11	51.81	hypothetical protein Csa_020383 [Cucumis sativus]	[more]
XP_022136254.1	1.1e-09	44.27	glycine-rich protein 3 short isoform-like [Momordica charantia]	[more]

BLAST of PI0006815 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006815.1	PI0006815.1	mRNA