PI0003608 (gene) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAACAAAATAAAAAATCCATTAAATCGATTATTTTTAAAAAGTTATTTTAATCAAATTAATTAATAGTCTAAGTTTAAATTCAAATAAAATCAGAGTAAGCCCTAATTTCTCGTTCCACCATCTTCTTCTTCTTCTTCTTCACGCCGGCTTCTCCGCTTCAATTTCAGCAGCTCAGTGACGCCCGTGTTCTACTTAGTGGGTTTTCCTGATTTCTTGTTGTTACTGGTAATTATCTCAATTTTCATCTATGCCTTTTTTTTTTTCTTTCTATAAATCGAAAAACTCCTTTTTGAACTTGTCTGATGAAAGAAAGAAGCAATACCCAGCGTCAAACAGTGAACTAATCGTTGATTTTGAACTTTTTTTTAGTTAATTACAAGTTACCAACTTGCTTTTCACCAATTACTCAGGTGGTGGTAGTGGTATAGCTCGAAGTTTTATAGTTCCATAATCCTTAAGGCCTTCATCTCCTCAAATGAAAGTTTCCTTTTTTATAAAAAAGAAAATTATATGTAAGTGTCTGGACCAGCTTACATCCAGCCCAACTAATTTCAGACGGGAGAACTTCTGGTGTCGAAGGAAACCTGTCGATATTAAATCCCAAATAGGTGAACAGCAACACTGTGGAAAGTTATGTTTTCTTTAGAGAAAATAGTTTGTGTAAAAAATATTGGTTAAGTAGTTAAAAGAATAATTCTTTTTTATCTTAGTAAAGGGCCTAGAGGTAGGCGAAGGCATGTTGGAGACTGCAAAAACGAATGATCTCTGTTCCGTTGATTCCCAGCTAGTGTGTTTTGTGTAGAAAGGACTTGGAAGAAAGGCTGCCCTTGTTTTTCCTATGCCTGTTTGATGCTTCATTTTTATTTTTATTTTATTTTTGATAAGAAACAGATTTCATAGACGAATGAAATTTACGTTTGCTGCTTCATTTTGATCCAGTCTCTCTTAAATATTTTACTTAGTCTGGGTGTTTCCAAGATTTGTTCATACTTCAGACAGAGGCTTTCTATCAGCTCATTTATGGAACCCTCTTAGAATTTTGTGGTATAATTAGGCGTTGGCTCTTCTGTGGAGAATTTGGTGTAAAAGAAATAGTACTTTTCTAGGAAGTGGCTGTACTCTTGTTGTATACTGGGAAAAAGGTGGTTGTCTACTTGGTATTAGTTGGTAGTTACAATCTTTAGCTTTTGTAATTATGGTTTATCTAAAATTTTTTGTCAACTAGGAGTTCTTTTTGTATCCCCCCTGGGCTTGTAGGGGATATCTCATTTCCTTTTTTATGTGTCTCCCTCTTATTAATGAGATTGTTTACTTATTTACTCATTCCTATATATATAAAAAGAAGTATATTACTAGAGGTAATGAGTTCAAGCCACAATAGTCACCCACCCGAGATTTAATGAGTGTTCTTTACAACCAAATCTAACAGGGTCAGGATGTTTACCTATTAGAAGAGTCAAAGCGTGCATGACTTGACCTGAACACTCATGAACATAGAAAAAGAAGGATAAAGTTCAAATCAGGATGGTCAATTAAGGATATTAAAATTTCTTTTAAATTTTTTTAATTCAAAATCACCATGGCTAAGCTGTTGACTTGTATGGCGGGTTGAGTTGTACATTCGTTGATCCAAACACCTATAGTTGTTTAAAACGATAATAATAGTAAAAGAAGGATGTTTATATGTTATGTACACATGTTTGAAAACTGTTGTTGCAGGTCTATGCTTTTCCAGCAGGATTTTATTTTTTCTTTAAATTGGTGTCTCCATATTCATGGTATATCTTGCTTTTGCATCCATCATGTTAATGTCTCCAACTTGTTTTGAATTTCTGAAAATGATTGTTTCATTATATCCGTGGTGTGTTCTGTATGTTGTGTCTTGTATTGGTTTTGAGATTTGTAACATAGCTATTCAGATTGATGTTACATTAACTTACTCTTACTCATTTAGAATGTGCATTATATATTCCTTGTGTACCTATTTAGTGAATGAGAATTGAATTGTTTGACAATGAATTAGCCAGGAACAAGATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTTAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGGTATTGTCTCAGAAAAGGAGATATGTGATTAGTATTTCTCATGGCTATTAAGTTCAGTTACAAGAACTACAAGTTTCTCGTTAATTCTCTTATTTGTTTACCTCCTCTTATGGTGATTTCGTTTTTCCTGTATAGATATATGTTTTTTTTCCAGAAGAAGCGAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACTCCTTTTGCCCGGGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTAGAAGTTTTCCAGGTGAAAATATTTTATGGAGTATTTTTATGATTTAAGTTTGAGAAAAACCAAACCACCACAAGTTAGAGAAGTAAATTAGATTCTTTTCGTGCACCACTAATTTGAGAAGAATCAAAGGAAACCCTCCTACTCTGGAAACTGGAAATCATCTTATGCTTAGTTTGGTTATTCCTTATTTTGCAAAATGAGAATGAAAATATGGGGGTTTCTTGGATTCTCTGGTTGAAGAACAATTAAAAGGCTAAGGTAGGGCTTGGTTTCTATAATATTCTTGCTCTTTTCTTAGTTCACTTCAAATATACAATTTTCATTCTTTTTCTTATCTTCATCTGTTGATGCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTAACAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGGTTAGCATTAATTCTGAAGAAAATATAACATTTGTGAGAACTTATCTTAAGATCTATGTTGGATATTTCTTAAGAAAATTTAACATATATGTGTGTGTGTGTGTTGGAATGTGTTATGCTCATGAATTCCTGATACCAGTTTGATTCCCAAAGTAGACATAAAAATGAAAGAATACACGGGTATACAAAAAAAAAAAAAACTCACAAAAAGGGAGCTCCCTGTACAAAAAGAGCTTAAATAATGTCTATAGAATAGTTACAAAAAGGCTTCAAAATCGAAGCCCACAAAGAAGCATGAAAACGAACGAGGAACCAAAAGTTTGAAGGATCTCTATCCACTTCCCTGGACACTCCATATTTCTTGTCCTGTAAAAGGACTGTAGAGTCATGTGCGTTGACGTTCATGACCTCAACAAAGCCAGTCCCAAGGATGATTTCCCTTCGTCACACATTGACATCTTGGTTACCAATAAAGCAGTGCATGAATCATTAGATATCATCACTATTACTTCACTGATCACAAGGCTATCTAGAGTCGTATGTCAGGCCATACCATCTCGTCTTGACTGTGTCAAAACTGCATCTATTCGTTAGTGTCTATATGTGTTTGCATTTCTGTTGCAATATGAAAGAGATTCTTATATGATTTTGCATATTTGGTGTTAGCTACCACGCATACAAGTGACCGACCCAGTTGCGCGATATTACGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATGTTTAAGATTTTGTAATTGAAGATGTGACATATGCATAGACCTTGAAGTTATGTTTTGAAGTCTTAATTAGTGTTATAATGGTTGTGATATCTGAGTTGAGTTGAAGAAGAATTTTGGAATTTCTGTATTAGGGATTTAGATGGGACCTTCATAGTATTAGTTTAGGTGTTGTTGTATACTAGTAGATTTTTATGAACATTGGAAGATTAATTATTTCTATTTAAGTGTACTTTTTTTGTAAATTGTCCCCCTGGAGTGTGGAATTTAGAAATAGCTATCTTTAAA TAACAAAATAAAAAATCCATTAAATCGATTATTTTTAAAAAGTTATTTTAATCAAATTAATTAATAGTCTAAGTTTAAATTCAAATAAAATCAGAGTAAGCCCTAATTTCTCGTTCCACCATCTTCTTCTTCTTCTTCTTCACGCCGGCTTCTCCGCTTCAATTTCAGCAGCTCAGTGACGCCCGTGTTCTACTTAGTGGGTTTTCCTGATTTCTTGTTGTTACTGGTGGTGGTAGTGGTATAGCTCGAAGTTTTATAGTTCCATAATCCTTAAGGCCTTCATCTCCTCAAATGAAAGTTTCCTTTTTTATAAAAAAGAAAATTATATGTAAGTGTCTGGACCAGCTTACATCCAGCCCAACTAATTTCAGACGGGAGAACTTCTGGTGTCGAAGGAAACCTGTCGATATTAAATCCCAAATAGCCAGGAACAAGATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTTAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGATATATGTTTTTTTTCCAGAAGAAGCGAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACTCCTTTTGCCCGGGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTAGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTAACAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAAGTGACCGACCCAGTTGCGCGATATTACGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATGTTTAAGATTTTGTAATTGAAGATGTGACATATGCATAGACCTTGAAGTTATGTTTTGAAGTCTTAATTAGTGTTATAATGGTTGTGATATCTGAGTTGAGTTGAAGAAGAATTTTGGAATTTCTGTATTAGGGATTTAGATGGGACCTTCATAGTATTAGTTTAGGTGTTGTTGTATACTAGTAGATTTTTATGAACATTGGAAGATTAATTATTTCTATTTAAGTGTACTTTTTTTGTAAATTGTCCCCCTGGAGTGTGGAATTTAGAAATAGCTATCTTTAAA ATGAAAGTTTCCTTTTTTATAAAAAAGAAAATTATATGTAAGTGTCTGGACCAGCTTACATCCAGCCCAACTAATTTCAGACGGGAGAACTTCTGGTGTCGAAGGAAACCTGTCGATATTAAATCCCAAATAGCCAGGAACAAGATGGTGCTATCAGAAGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACCGTGTTTCAAATGCTTAGAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGACATGACAAGGGAGCAATTTAAGCAAAAATATGGTGAAAACATGAAAAGAGAAGACATTGTTATTAATAAATCCAAGAGAAATGATAGCAGTGATCAGATATATGTTTTTTTTCCAGAAGAAGCGAAGGTTGGCATCAAGCCGTTGAAAACATATACCACCCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACTCCTTTTGCCCGGGCCTGTATGAGTGAAGCAACTTCCAAATCATTCCACTTAGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGATCACGTCCTTGTTCCTGAGCACCAGTTACTTAACAATGAAGAGAAAAAGACACTACTTGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAAGTGACCGACCCAGTTGCGCGATATTACGGGCTAAAGCGTGGCCAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGA MKVSFFIKKKIICKCLDQLTSSPTNFRRENFWCRRKPVDIKSQIARNKMVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV Homology
BLAST of PI0003608 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 1.4e-88 Identity = 162/206 (78.64%), Postives = 190/206 (92.23%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 5.2e-54 Identity = 110/207 (53.14%), Postives = 148/207 (71.50%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 5.2e-54 Identity = 110/207 (53.14%), Postives = 148/207 (71.50%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 1.5e-53 Identity = 109/207 (52.66%), Postives = 147/207 (71.01%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy Swiss-Prot
Match: Q9N5K2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 2.6e-53 Identity = 114/212 (53.77%), Postives = 148/212 (69.81%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy TrEMBL
Match: A0A5D3C9X8 (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00310 PE=3 SV=1) HSP 1 Score: 406.0 bits (1042), Expect = 1.2e-109 Identity = 209/214 (97.66%), Postives = 212/214 (99.07%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy TrEMBL
Match: A0A0A0K8L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374590 PE=3 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 1.7e-108 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy TrEMBL
Match: A0A1S3BS23 (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC103492579 PE=3 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 8.4e-108 Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 6.0e-98 Identity = 188/207 (90.82%), Postives = 198/207 (95.65%), Query Frame = 0
BLAST of PI0003608 vs. ExPASy TrEMBL
Match: A0A6J1CPU1 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX=3673 GN=LOC111013465 PE=3 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 6.0e-98 Identity = 189/207 (91.30%), Postives = 197/207 (95.17%), Query Frame = 0
BLAST of PI0003608 vs. NCBI nr
Match: KAA0059617.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] >TYK08150.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa]) HSP 1 Score: 406.0 bits (1042), Expect = 2.4e-109 Identity = 209/214 (97.66%), Postives = 212/214 (99.07%), Query Frame = 0
BLAST of PI0003608 vs. NCBI nr
Match: XP_004148944.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >XP_011659238.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN44717.1 hypothetical protein Csa_016684 [Cucumis sativus]) HSP 1 Score: 402.1 bits (1032), Expect = 3.5e-108 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of PI0003608 vs. NCBI nr
Match: XP_008451219.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo]) HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-107 Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0
BLAST of PI0003608 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia]) HSP 1 Score: 367.1 bits (941), Expect = 1.2e-97 Identity = 189/207 (91.30%), Postives = 197/207 (95.17%), Query Frame = 0
BLAST of PI0003608 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 367.1 bits (941), Expect = 1.2e-97 Identity = 188/207 (90.82%), Postives = 198/207 (95.65%), Query Frame = 0
BLAST of PI0003608 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 327.4 bits (838), Expect = 1.0e-89 Identity = 162/206 (78.64%), Postives = 190/206 (92.23%), Query Frame = 0
BLAST of PI0003608 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C ) HSP 1 Score: 179.1 bits (453), Expect = 4.5e-45 Identity = 97/207 (46.86%), Postives = 146/207 (70.53%), Query Frame = 0
BLAST of PI0003608 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D ) HSP 1 Score: 136.7 bits (343), Expect = 2.6e-32 Identity = 79/215 (36.74%), Postives = 130/215 (60.47%), Query Frame = 0
BLAST of PI0003608 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 132.5 bits (332), Expect = 4.8e-31 Identity = 75/204 (36.76%), Postives = 119/204 (58.33%), Query Frame = 0
BLAST of PI0003608 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E ) HSP 1 Score: 121.3 bits (303), Expect = 1.1e-27 Identity = 72/202 (35.64%), Postives = 114/202 (56.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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