PI0002737 (gene) Melon (PI 482460) v1

Overview


Name	PI0002737
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr10: 10478409 .. 10478903 (-)
RNA-Seq Expression	PI0002737
Synteny	PI0002737

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTCCAGCTCAGAATCTGACCTCACCCCAGTCATCCCAACCTCCACCGAATCATCACATTCAGGCAATACCTCTGTCCCTACTTCCACTCTCTTCTTACTATCCAATATTTGCAATCGTGTACCTATTCGTTTAGATTCCACCAATTACATTCTCTGGAAGTATCAAGTCTCCTCTATTCTTAAAGCACACTCTCTTTTTGGCCACCTTGATGAATCCCTGCCCTGCCCATCCAAACATCTTGCCTCACCCACCTCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACTCTCATCAACGCTACGTTATCGTCCTCTGCCCTTGCCCATGTAGTCGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAAACGATACTCCTCCAACACCAGATCCAACATTCTTGATTTAAGGTTTGCCCTTTATACCATAAAAAAAATCTTCTTCTGA

mRNA sequence

ATGGCTGCCTCCAGCTCAGAATCTGACCTCACCCCAGTCATCCCAACCTCCACCGAATCATCACATTCAGGCAATACCTCTGTCCCTACTTCCACTCTCTTCTTACTATCCAATATTTGCAATCGTGTACCTATTCGTTTAGATTCCACCAATTACATTCTCTGGAAGTATCAAGTCTCCTCTATTCTTAAAGCACACTCTCTTTTTGGCCACCTTGATGAATCCCTGCCCTGCCCATCCAAACATCTTGCCTCACCCACCTCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACTCTCATCAACGCTACGTTATCGTCCTCTGCCCTTGCCCATGTAGTCGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAAACGATACTCCTCCAACACCAGATCCAACATTCTTGATTTAAGGTTTGCCCTTTATACCATAAAAAAAATCTTCTTCTGA

Coding sequence (CDS)

ATGGCTGCCTCCAGCTCAGAATCTGACCTCACCCCAGTCATCCCAACCTCCACCGAATCATCACATTCAGGCAATACCTCTGTCCCTACTTCCACTCTCTTCTTACTATCCAATATTTGCAATCGTGTACCTATTCGTTTAGATTCCACCAATTACATTCTCTGGAAGTATCAAGTCTCCTCTATTCTTAAAGCACACTCTCTTTTTGGCCACCTTGATGAATCCCTGCCCTGCCCATCCAAACATCTTGCCTCACCCACCTCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACTCTCATCAACGCTACGTTATCGTCCTCTGCCCTTGCCCATGTAGTCGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAAACGATACTCCTCCAACACCAGATCCAACATTCTTGATTTAAGGTTTGCCCTTTATACCATAAAAAAAATCTTCTTCTGA

Protein sequence

MAASSSESDLTPVIPTSTESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLEKRYSSNTRSNILDLRFALYTIKKIFF

Homology

[Close]

BLAST of PI0002737 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.9e-11
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 46  RLDSTNYILWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRD 105
           +L STNY++W  QV ++   + L G LD S P P    A+  +DA P +NP+Y +W  +D
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPP---ATIGTDAVPRVNPDYTRWRRQD 84

Query: 106 QALITLINATLSSSALAHVVGSVSSKDLWLSLEKRYSSNTRSNILDLRF 155
           + + + I   +S S    V  + ++  +W +L K Y++ +  ++  LRF
Sbjct: 85  KLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRF 130

[Close]

BLAST of PI0002737 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-09
Identity = 33/111 (29.73%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 46  RLDSTNYILWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRD 105
           +L STNY++W  QV ++   + L G LD S   P    A+  +DA P +NP+Y +W  +D
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPP---ATIGTDAAPRVNPDYTRWKRQD 84

Query: 106 QALITLINATLSSSALAHVVGSVSSKDLWLSLEKRYSSNTRSNILDLRFAL 157
           + + + +   +S S    V  + ++  +W +L K Y++ +  ++  LR  L
Sbjct: 85  KLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQL 132

[Close]

BLAST of PI0002737 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58
Identity = 128/161 (79.50%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MAASSSESDLTPVIPTSTESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVS 60
           MA  SS+SDL        ES  S N SVPTSTLFLLSNICN VPIRLDSTNY+LWKYQVS
Sbjct: 1   MATPSSQSDLPGTSNPIPES--SSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVS 60

Query: 61  SILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSA 120
           SILKAHSLFGH+D++LPCP KHL S T   + EINPEYLQWLSRDQALITLIN TLSSSA
Sbjct: 61  SILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSSSA 120

Query: 121 LAHVVGSVSSKDLWLSLEKRYSSNTRSNILDLRFALYTIKK 162
           LAHVV SVSSK LWLSLEKRYSSNTRSNILDLR ALYTI K
Sbjct: 121 LAHVVSSVSSKALWLSLEKRYSSNTRSNILDLRSALYTINK 159

[Close]

BLAST of PI0002737 vs. ExPASy TrEMBL
Match: A0A5D3CH60 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00480 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.9e-54
Identity = 113/137 (82.48%), Postives = 120/137 (87.59%), Query Frame = 0


Query: 23  SGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVSSILKAHSLFGHLDESLPCPSKH 82
           S N SVPTSTLFLLSNICN VPIRLDSTNY+LWKYQVSSILKAHSLFGH+D++LPCP KH
Sbjct: 49  SSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKH 108

Query: 83  LASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLEKRYS 142
             S T   + EINPEY+QWLSRDQALITLINATLSSSALAHVVGSVSSK LWLSLEKRYS
Sbjct: 109 SPSSTLRTNSEINPEYVQWLSRDQALITLINATLSSSALAHVVGSVSSKALWLSLEKRYS 168

Query: 143 SNTRSNILDLRFALYTI 160
           SN RSNILDL  A  +I
Sbjct: 169 SNIRSNILDLSIAAASI 185

[Close]

BLAST of PI0002737 vs. ExPASy TrEMBL
Match: A0A5A7T8B0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00680 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 111/144 (77.08%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 18  TESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVSSILKAHSLFGHLDESLP 77
           +E   S N S+PTSTLFLLS+ICN VPIRLDSTNY+LWKYQVSSILKA+S FGH+D++LP
Sbjct: 3   SEPESSSNPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHIDDTLP 62

Query: 78  CPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSL 137
           CP KHL   T   + +INPEYLQWLS DQALITLIN TLSSSALA+VVGSVSSK LWLSL
Sbjct: 63  CPPKHLPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKALWLSL 122

Query: 138 EKRYSSNTRSNILDLRFALYTIKK 162
           EKRYSSNT+SNILDL  ALYT+KK
Sbjct: 123 EKRYSSNTQSNILDLTSALYTLKK 146

[Close]

BLAST of PI0002737 vs. ExPASy TrEMBL
Match: A0A1S4E4S1 (uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 111/144 (77.08%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 18  TESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVSSILKAHSLFGHLDESLP 77
           +E   S N S+PTSTLFLLS+ICN VPIRLDSTNY+LWKYQVSSILKA+S FGH+D++LP
Sbjct: 3   SEPESSSNPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHIDDTLP 62

Query: 78  CPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSL 137
           CP KHL   T   + +INPEYLQWLS DQALITLIN TLSSSALA+VVGSVSSK LWLSL
Sbjct: 63  CPPKHLPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKALWLSL 122

Query: 138 EKRYSSNTRSNILDLRFALYTIKK 162
           EKRYSSNT+SNILDL  ALYT+KK
Sbjct: 123 EKRYSSNTQSNILDLTSALYTLKK 146

[Close]

BLAST of PI0002737 vs. ExPASy TrEMBL
Match: A0A5A7VGG0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00280 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 108/139 (77.70%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MAASSSESDLTPVIPTSTESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVS 60
           MA  SS+SDL+       ES  S N+ VPTSTLFLLSNICN VPIRLDSTNYILWKYQVS
Sbjct: 1   MATPSSQSDLSETSNPILES--SSNSFVPTSTLFLLSNICNLVPIRLDSTNYILWKYQVS 60

Query: 61  SILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSA 120
           SILKAHS FGH+D++LPCP KHL+S T   + EINPEYLQWLSR QALITLINATLSSSA
Sbjct: 61  SILKAHSFFGHIDDTLPCPPKHLSSSTLGTNSEINPEYLQWLSRSQALITLINATLSSSA 120

Query: 121 LAHVVGSVSSKDLWLSLEK 140
           LAHVVGSVSSK LWLSLEK
Sbjct: 121 LAHVVGSVSSKALWLSLEK 137

[Close]

BLAST of PI0002737 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 6.2e-58
Identity = 128/161 (79.50%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MAASSSESDLTPVIPTSTESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVS 60
           MA  SS+SDL        ES  S N SVPTSTLFLLSNICN VPIRLDSTNY+LWKYQVS
Sbjct: 1   MATPSSQSDLPGTSNPIPES--SSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVS 60

Query: 61  SILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSA 120
           SILKAHSLFGH+D++LPCP KHL S T   + EINPEYLQWLSRDQALITLIN TLSSSA
Sbjct: 61  SILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSSSA 120

Query: 121 LAHVVGSVSSKDLWLSLEKRYSSNTRSNILDLRFALYTIKK 162
           LAHVV SVSSK LWLSLEKRYSSNTRSNILDLR ALYTI K
Sbjct: 121 LAHVVSSVSSKALWLSLEKRYSSNTRSNILDLRSALYTINK 159

[Close]

BLAST of PI0002737 vs. NCBI nr
Match: TYK11141.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 113/137 (82.48%), Postives = 120/137 (87.59%), Query Frame = 0


Query: 23  SGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVSSILKAHSLFGHLDESLPCPSKH 82
           S N SVPTSTLFLLSNICN VPIRLDSTNY+LWKYQVSSILKAHSLFGH+D++LPCP KH
Sbjct: 49  SSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKH 108

Query: 83  LASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLEKRYS 142
             S T   + EINPEY+QWLSRDQALITLINATLSSSALAHVVGSVSSK LWLSLEKRYS
Sbjct: 109 SPSSTLRTNSEINPEYVQWLSRDQALITLINATLSSSALAHVVGSVSSKALWLSLEKRYS 168

Query: 143 SNTRSNILDLRFALYTI 160
           SN RSNILDL  A  +I
Sbjct: 169 SNIRSNILDLSIAAASI 185

[Close]

BLAST of PI0002737 vs. NCBI nr
Match: XP_016902970.1 (PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo] >KAA0039118.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK26994.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-53
Identity = 111/144 (77.08%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 18  TESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVSSILKAHSLFGHLDESLP 77
           +E   S N S+PTSTLFLLS+ICN VPIRLDSTNY+LWKYQVSSILKA+S FGH+D++LP
Sbjct: 3   SEPESSSNPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHIDDTLP 62

Query: 78  CPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSL 137
           CP KHL   T   + +INPEYLQWLS DQALITLIN TLSSSALA+VVGSVSSK LWLSL
Sbjct: 63  CPPKHLPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKALWLSL 122

Query: 138 EKRYSSNTRSNILDLRFALYTIKK 162
           EKRYSSNT+SNILDL  ALYT+KK
Sbjct: 123 EKRYSSNTQSNILDLTSALYTLKK 146

[Close]

BLAST of PI0002737 vs. NCBI nr
Match: KAA0067173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 2.2e-47
Identity = 108/139 (77.70%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MAASSSESDLTPVIPTSTESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVS 60
           MA  SS+SDL+       ES  S N+ VPTSTLFLLSNICN VPIRLDSTNYILWKYQVS
Sbjct: 1   MATPSSQSDLSETSNPILES--SSNSFVPTSTLFLLSNICNLVPIRLDSTNYILWKYQVS 60

Query: 61  SILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSA 120
           SILKAHS FGH+D++LPCP KHL+S T   + EINPEYLQWLSR QALITLINATLSSSA
Sbjct: 61  SILKAHSFFGHIDDTLPCPPKHLSSSTLGTNSEINPEYLQWLSRSQALITLINATLSSSA 120

Query: 121 LAHVVGSVSSKDLWLSLEK 140
           LAHVVGSVSSK LWLSLEK
Sbjct: 121 LAHVVGSVSSKALWLSLEK 137

[Close]

BLAST of PI0002737 vs. NCBI nr
Match: TYJ97594.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-46
Identity = 106/139 (76.26%), Postives = 114/139 (82.01%), Query Frame = 0


Query: 1   MAASSSESDLTPVIPTSTESSHSGNTSVPTSTLFLLSNICNRVPIRLDSTNYILWKYQVS 60
           MA  S +SDL+       ES  S N  VPTSTLFLLSNICN VPIRLDSTNY+LWKYQVS
Sbjct: 1   MATPSFQSDLSKTSNPIPES--SSNPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVS 60

Query: 61  SILKAHSLFGHLDESLPCPSKHLASPTSDAHPEINPEYLQWLSRDQALITLINATLSSSA 120
           SILKAHSLFGH+D++LPCP KHL S T   + EINPEYLQWLSRDQALITLINATLSSSA
Sbjct: 61  SILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINATLSSSA 120

Query: 121 LAHVVGSVSSKDLWLSLEK 140
           L HVVGSV+SK LWLSLEK
Sbjct: 121 LTHVVGSVTSKALWLSLEK 137

The following BLAST results are available for this feature:

BLAST of PI0002737 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	5.9e-11	32.11	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.9e-09	29.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of PI0002737 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZE5	3.0e-58	79.50	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CH60	5.9e-54	82.48	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7T8B0	1.3e-53	77.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E4S1	1.3e-53	77.08	uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=...	[more]
A0A5A7VGG0	1.1e-47	77.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0002737 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061282.1	6.2e-58	79.50	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m...	[more]
TYK11141.1	1.2e-53	82.48	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
XP_016902970.1	2.7e-53	77.08	PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo] >KAA0039118.1 ret...	[more]
KAA0067173.1	2.2e-47	77.70	retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon p...	[more]
TYJ97594.1	1.9e-46	76.26	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0002737 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR37610:SF56	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 17..154
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 17..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002737.1	PI0002737.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding