Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAGATTGTGTCAATAAAAAGGTCATGGTGATAAGAAATGAGATAATTGATTCGAAAGACGAATGTGATCAACATAATGCACAACTTGAGGGAGAATCTGATGCACATAATGATGAATACATTGAAGAAGGTAACTCCATATCCATAGTTTCAAGAAGAGTACTTAATGTAAAAATCAAGGAAGATAAAGTCGAAGGGCAAAGGGAGAACTTGTTTCATACAAGATACTTGATTGAAGGAACTCCATGTAGCACCAATGTGCTAAGTAGTATTTTTGTAAAAAGAATCCAACTTACTACTCGTCCACATCCAAAATCATACAAGCTTGAATGGTTGACAAACAAAGGAGAACTTAAGGTAAACTCCCAAGCTCTTATTTCTTTTACTTTGGGAAGATATAAAGATGAAGTTCTTAATAATGTAGTACCATACATGCATGTTATATATTATTGGGTCGACCTTGGCAATATGATAGGGAGGTCACATATAATGGGTTTTTGAATAAATATACATTTACTTTGAACAGAAAGAAGTTTACTTTGCTTCCATTGTCTCCATTTGAAGTCCAATGTGATCAATTGAAATTAGAAAAGAAAAGAAAAGAATTTGAAGAGGTCAAAAGAGGAGAGAAGCAAGTAAGTTTAAAGAAAGAGAGAAGAGTGAAAAAAAGAAGAAAAGTTAGGGGCAAAAGGTAAGTGAAAATCAAGAGAAAAAAGAGAGTGATTTTGAGAAAACAAGAAAGAATGTCAGCTTGGTTATAA
mRNA sequence
ATGAACAAAGATTGTGTCAATAAAAAGGTCATGGTGATAAGAAATGAGATAATTGATTCGAAAGACGAATGTGATCAACATAATGCACAACTTGAGGGAGAATCTGATGCACATAATGATGAATACATTGAAGAAGAAAGAATGTCAGCTTGGTTATAA
Coding sequence (CDS)
ATGAACAAAGATTGTGTCAATAAAAAGGTCATGGTGATAAGAAATGAGATAATTGATTCGAAAGACGAATGTGATCAACATAATGCACAACTTGAGGGAGAATCTGATGCACATAATGATGAATACATTGAAGAAGAAAGAATGTCAGCTTGGTTATAA
Protein sequence
MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEEERMSAWL
Homology
BLAST of PI0000007 vs. ExPASy TrEMBL
Match:
A0A5A7SKE7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00370 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 7.4e-11
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
M+KDCVNKKVMVIRN IIDSKDECD+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE 161
BLAST of PI0000007 vs. ExPASy TrEMBL
Match:
A0A5D3C4C3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00340 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
M+KDCVNKKVMVIRN IIDSKDE D+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIE 161
BLAST of PI0000007 vs. ExPASy TrEMBL
Match:
A0A0A0KW07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G122290 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
M+KD VNKKVMVIRN IIDSK+ECD+H+A LE ESDAH+DEYIEE
Sbjct: 35 MSKDYVNKKVMVIRNWIIDSKNECDEHDAPLEEESDAHDDEYIEE 79
BLAST of PI0000007 vs. ExPASy TrEMBL
Match:
A0A5A7SRG3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00210 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 7.2e-06
Identity = 29/46 (63.04%), Postives = 40/46 (86.96%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAH-NDEYIEE 46
M+KDC+NK+VMV+RN +IDSKDEC++++AQLE E + +DEYIEE
Sbjct: 320 MSKDCINKRVMVVRNGVIDSKDECEENDAQLEEEYETPVDDEYIEE 365
BLAST of PI0000007 vs. ExPASy TrEMBL
Match:
A0A5A7VK67 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00500 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 2.1e-05
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAH-NDEYIEE 46
M+KDC+NK+VMV+RN +IDS+DEC++++AQLE E + +DEYIEE
Sbjct: 144 MSKDCINKRVMVVRNGVIDSEDECEENDAQLEEEYETPVDDEYIEE 189
BLAST of PI0000007 vs. NCBI nr
Match:
KAA0025749.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
M+KDCVNKKVMVIRN IIDSKDECD+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE 161
BLAST of PI0000007 vs. NCBI nr
Match:
TYK06180.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
M+KDCVNKKVMVIRN IIDSKDE D+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIE 161
BLAST of PI0000007 vs. NCBI nr
Match:
KGN53753.1 (hypothetical protein Csa_014547 [Cucumis sativus])
HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
M+KD VNKKVMVIRN IIDSK+ECD+H+A LE ESDAH+DEYIEE
Sbjct: 35 MSKDYVNKKVMVIRNWIIDSKNECDEHDAPLEEESDAHDDEYIEE 79
BLAST of PI0000007 vs. NCBI nr
Match:
XP_038896445.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120084703 [Benincasa hispida])
HSP 1 Score: 67.0 bits (162), Expect = 5.4e-08
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
M+KDCVNKKV+VIRNEIIDS+DECD+ LE ES+A +DEYIEE
Sbjct: 1 MSKDCVNKKVIVIRNEIIDSEDECDEQGGNLEEESEAFDDEYIEE 45
BLAST of PI0000007 vs. NCBI nr
Match:
XP_038902374.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120089011 [Benincasa hispida])
HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0
Query: 1 MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
++KDCVNKKVMVIRN IIDS++ECD+ + LE ES+A +DEYI+E
Sbjct: 258 ISKDCVNKKVMVIRNGIIDSENECDEQGSSLEEESEAFDDEYIKE 302
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SKE7 | 7.4e-11 | 84.09 | Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3C4C3 | 1.1e-09 | 81.82 | Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A0A0KW07 | 2.4e-09 | 80.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G122290 PE=4 SV=1 | [more] |
A0A5A7SRG3 | 7.2e-06 | 63.04 | Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7VK67 | 2.1e-05 | 60.87 | Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
Match Name | E-value | Identity | Description | |
KAA0025749.1 | 1.5e-10 | 84.09 | Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] | [more] |
TYK06180.1 | 2.2e-09 | 81.82 | Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] | [more] |
KGN53753.1 | 4.9e-09 | 80.00 | hypothetical protein Csa_014547 [Cucumis sativus] | [more] |
XP_038896445.1 | 5.4e-08 | 73.33 | LOW QUALITY PROTEIN: uncharacterized protein LOC120084703 [Benincasa hispida] | [more] |
XP_038902374.1 | 3.0e-06 | 66.67 | LOW QUALITY PROTEIN: uncharacterized protein LOC120089011 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |