PI0000007 (gene) Melon (PI 482460) v1

Overview


Name	PI0000007
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	chr05: 16239588 .. 16240354 (+)
RNA-Seq Expression	PI0000007
Synteny	PI0000007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAAGATTGTGTCAATAAAAAGGTCATGGTGATAAGAAATGAGATAATTGATTCGAAAGACGAATGTGATCAACATAATGCACAACTTGAGGGAGAATCTGATGCACATAATGATGAATACATTGAAGAAGGTAACTCCATATCCATAGTTTCAAGAAGAGTACTTAATGTAAAAATCAAGGAAGATAAAGTCGAAGGGCAAAGGGAGAACTTGTTTCATACAAGATACTTGATTGAAGGAACTCCATGTAGCACCAATGTGCTAAGTAGTATTTTTGTAAAAAGAATCCAACTTACTACTCGTCCACATCCAAAATCATACAAGCTTGAATGGTTGACAAACAAAGGAGAACTTAAGGTAAACTCCCAAGCTCTTATTTCTTTTACTTTGGGAAGATATAAAGATGAAGTTCTTAATAATGTAGTACCATACATGCATGTTATATATTATTGGGTCGACCTTGGCAATATGATAGGGAGGTCACATATAATGGGTTTTTGAATAAATATACATTTACTTTGAACAGAAAGAAGTTTACTTTGCTTCCATTGTCTCCATTTGAAGTCCAATGTGATCAATTGAAATTAGAAAAGAAAAGAAAAGAATTTGAAGAGGTCAAAAGAGGAGAGAAGCAAGTAAGTTTAAAGAAAGAGAGAAGAGTGAAAAAAAGAAGAAAAGTTAGGGGCAAAAGGTAAGTGAAAATCAAGAGAAAAAAGAGAGTGATTTTGAGAAAACAAGAAAGAATGTCAGCTTGGTTATAA

mRNA sequence

ATGAACAAAGATTGTGTCAATAAAAAGGTCATGGTGATAAGAAATGAGATAATTGATTCGAAAGACGAATGTGATCAACATAATGCACAACTTGAGGGAGAATCTGATGCACATAATGATGAATACATTGAAGAAGAAAGAATGTCAGCTTGGTTATAA

Coding sequence (CDS)

ATGAACAAAGATTGTGTCAATAAAAAGGTCATGGTGATAAGAAATGAGATAATTGATTCGAAAGACGAATGTGATCAACATAATGCACAACTTGAGGGAGAATCTGATGCACATAATGATGAATACATTGAAGAAGAAAGAATGTCAGCTTGGTTATAA

Protein sequence

MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEEERMSAWL

Homology

[Close]

BLAST of PI0000007 vs. ExPASy TrEMBL
Match: A0A5A7SKE7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00370 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.4e-11
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
           M+KDCVNKKVMVIRN IIDSKDECD+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of PI0000007 vs. ExPASy TrEMBL
Match: A0A5D3C4C3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00340 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1   MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
           M+KDCVNKKVMVIRN IIDSKDE D+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of PI0000007 vs. ExPASy TrEMBL
Match: A0A0A0KW07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G122290 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
          M+KD VNKKVMVIRN IIDSK+ECD+H+A LE ESDAH+DEYIEE
Sbjct: 35 MSKDYVNKKVMVIRNWIIDSKNECDEHDAPLEEESDAHDDEYIEE 79

[Close]

BLAST of PI0000007 vs. ExPASy TrEMBL
Match: A0A5A7SRG3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00210 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-06
Identity = 29/46 (63.04%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1   MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAH-NDEYIEE 46
           M+KDC+NK+VMV+RN +IDSKDEC++++AQLE E +   +DEYIEE
Sbjct: 320 MSKDCINKRVMVVRNGVIDSKDECEENDAQLEEEYETPVDDEYIEE 365

[Close]

BLAST of PI0000007 vs. ExPASy TrEMBL
Match: A0A5A7VK67 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00500 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-05
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1   MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAH-NDEYIEE 46
           M+KDC+NK+VMV+RN +IDS+DEC++++AQLE E +   +DEYIEE
Sbjct: 144 MSKDCINKRVMVVRNGVIDSEDECEENDAQLEEEYETPVDDEYIEE 189

[Close]

BLAST of PI0000007 vs. NCBI nr
Match: KAA0025749.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
           M+KDCVNKKVMVIRN IIDSKDECD+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of PI0000007 vs. NCBI nr
Match: TYK06180.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1   MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIE 45
           M+KDCVNKKVMVIRN IIDSKDE D+H+A LE ESDAH+DEYIE
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of PI0000007 vs. NCBI nr
Match: KGN53753.1 (hypothetical protein Csa_014547 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
          M+KD VNKKVMVIRN IIDSK+ECD+H+A LE ESDAH+DEYIEE
Sbjct: 35 MSKDYVNKKVMVIRNWIIDSKNECDEHDAPLEEESDAHDDEYIEE 79

[Close]

BLAST of PI0000007 vs. NCBI nr
Match: XP_038896445.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120084703 [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-08
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
          M+KDCVNKKV+VIRNEIIDS+DECD+    LE ES+A +DEYIEE
Sbjct: 1  MSKDCVNKKVIVIRNEIIDSEDECDEQGGNLEEESEAFDDEYIEE 45

[Close]

BLAST of PI0000007 vs. NCBI nr
Match: XP_038902374.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120089011 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1   MNKDCVNKKVMVIRNEIIDSKDECDQHNAQLEGESDAHNDEYIEE 46
           ++KDCVNKKVMVIRN IIDS++ECD+  + LE ES+A +DEYI+E
Sbjct: 258 ISKDCVNKKVMVIRNGIIDSENECDEQGSSLEEESEAFDDEYIKE 302

The following BLAST results are available for this feature:

BLAST of PI0000007 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKE7	7.4e-11	84.09	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C4C3	1.1e-09	81.82	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KW07	2.4e-09	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G122290 PE=4 SV=1	[more]
A0A5A7SRG3	7.2e-06	63.04	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VK67	2.1e-05	60.87	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of PI0000007 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025749.1	1.5e-10	84.09	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK06180.1	2.2e-09	81.82	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KGN53753.1	4.9e-09	80.00	hypothetical protein Csa_014547 [Cucumis sativus]	[more]
XP_038896445.1	5.4e-08	73.33	LOW QUALITY PROTEIN: uncharacterized protein LOC120084703 [Benincasa hispida]	[more]
XP_038902374.1	3.0e-06	66.67	LOW QUALITY PROTEIN: uncharacterized protein LOC120089011 [Benincasa hispida]	[more]

BLAST of PI0000007 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000007.1	PI0000007.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding