Moc10g30200 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g30200
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Lgl_C domain-containing protein
Location	chr10: 22805513 .. 22806478 (+)
RNA-Seq Expression	Moc10g30200
Synteny	Moc10g30200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTACAAATCCAAACTATACTAGCATACATCGTCACCCTAATCGAATCAGTATATACTTCATCAAAAAATTCAGGAAAGCTGAAACAGATGAAGGTCAAGACGGAGAAAAACTCGGCCAAGGAAGAGCAACCTGATTGGAATCCAGATAATAAGGCAGGTGCAGTTGATCAAATCAAGAAGAAGTACGGGTTTTCATCAGCTGGGGTAAGTACACATCTGCTACCAATCTTCTAGCTACGCATACATATGGCTAAGTTGAACTCTTACAAATGATGCCTTTCGAAAAAGATGATGAGAGGAGTAGGTCAATGGATCTTATAAATCTTGTCGGGTTCTTTGATATTATTCATCTGGGATCCTTAACAATCTTAAATAAGGAGAAAGATGTAAGCAATGTATGTATAAATGATCTAGATAACTCTAGCAGTTTATACGAATTCTAACTAATGATTCCTTCTTAAGATTGAGCCGACACTGCACAATTAGATATTGGTGATCCTTGGACGAATACAAAAGTAGATAGACGAATGCAAGCTGTATGGCCTCTTGGAACGTAGCTGTTAGAGTCACATTTCGGGGCTAATATTCCACTTAATCAGAAATAGATTGAGCTATTGATGTAGAAAATAGTGAACTAATTTAGAGTGTTGGTGTAAGATTTGATGAAGTTGCATCACCACTGATCACCATCCGTTTTCTTTGCTTGCAGGAAACAAGTGTTGCAAAGATGACAGAAAGCAAGCTGCAAGAGAATGTGAAGAAATTACAGGTACAATCCCCAACTTTCAACTTCAAGAAAAGTATGCAAAGGGGTTTTATATTAATTGAATTTGAGCAAAAGAGGGAAGGGGAATGATATATAATTACATTGTGCAGGGAATCAACCAAAGAGCTACAGATATGCAAGACACAGGCAAAGTCATTTTCATCAATGGCAAATCAATTACTGCGAACTGCTGA

mRNA sequence

ATGGCTTTACAAATCCAAACTATACTAGCATACATCGTCACCCTAATCGAATCAGTATATACTTCATCAAAAAATTCAGGAAAGCTGAAACAGATGAAGGTCAAGACGGAGAAAAACTCGGCCAAGGAAGAGCAACCTGATTGGAATCCAGATAATAAGGCAGGTGCAGTTGATCAAATCAAGAAGAAGTACGGGTTTTCATCAGCTGGGGAAACAAGTGTTGCAAAGATGACAGAAAGCAAGCTGCAAGAGAATGTGAAGAAATTACAGGGAATCAACCAAAGAGCTACAGATATGCAAGACACAGGCAAAGTCATTTTCATCAATGGCAAATCAATTACTGCGAACTGCTGA

Coding sequence (CDS)

ATGGCTTTACAAATCCAAACTATACTAGCATACATCGTCACCCTAATCGAATCAGTATATACTTCATCAAAAAATTCAGGAAAGCTGAAACAGATGAAGGTCAAGACGGAGAAAAACTCGGCCAAGGAAGAGCAACCTGATTGGAATCCAGATAATAAGGCAGGTGCAGTTGATCAAATCAAGAAGAAGTACGGGTTTTCATCAGCTGGGGAAACAAGTGTTGCAAAGATGACAGAAAGCAAGCTGCAAGAGAATGTGAAGAAATTACAGGGAATCAACCAAAGAGCTACAGATATGCAAGACACAGGCAAAGTCATTTTCATCAATGGCAAATCAATTACTGCGAACTGCTGA

Protein sequence

MALQIQTILAYIVTLIESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVAKMTESKLQENVKKLQGINQRATDMQDTGKVIFINGKSITANC

Homology

[Close]

BLAST of Moc10g30200 vs. NCBI nr
Match: XP_022145407.1 (uncharacterized protein LOC111014861 isoform X1 [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-32
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 16   IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 75
            + S + S K  GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA
Sbjct: 943  LASTFNSFK--GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 1002

Query: 76   KMTESKLQENVKKLQGINQRATDMQDTGK 105
            KMTESKLQENVKKLQGINQRATDMQDT K
Sbjct: 1003 KMTESKLQENVKKLQGINQRATDMQDTAK 1029

[Close]

BLAST of Moc10g30200 vs. NCBI nr
Match: XP_022145409.1 (uncharacterized protein LOC111014861 isoform X2 [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-32
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 16  IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 75
           + S + S K  GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA
Sbjct: 857 LASTFNSFK--GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 916

Query: 76  KMTESKLQENVKKLQGINQRATDMQDTGK 105
           KMTESKLQENVKKLQGINQRATDMQDT K
Sbjct: 917 KMTESKLQENVKKLQGINQRATDMQDTAK 943

[Close]

BLAST of Moc10g30200 vs. NCBI nr
Match: XP_023552249.1 (uncharacterized protein LOC111809973 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 16  IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWN--PDNKAGAVDQIKKKYGFSSAGETS 75
           + S + S K  GKLKQMKVKTEKNSAKEEQPDWN   DNKAGAVDQIKKKYGFSSAG+TS
Sbjct: 852 LASTFNSLK--GKLKQMKVKTEKNSAKEEQPDWNNAADNKAGAVDQIKKKYGFSSAGDTS 911

Query: 76  VAKMTESKLQENVKKLQGINQRATDMQDTGK 105
           VAKM ESKLQEN+ KLQGIN RATDMQDT K
Sbjct: 912 VAKMAESKLQENITKLQGINLRATDMQDTAK 940

[Close]

BLAST of Moc10g30200 vs. NCBI nr
Match: KAG7015851.1 (Syntaxin-binding protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 16  IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWN--PDNKAGAVDQIKKKYGFSSAGETS 75
           + S + S K  GKLKQMKVKTEKNSAKEEQPDWN   DNKAGAVDQIKKKYGFSSAG+TS
Sbjct: 891 LASTFNSLK--GKLKQMKVKTEKNSAKEEQPDWNNAADNKAGAVDQIKKKYGFSSAGDTS 950

Query: 76  VAKMTESKLQENVKKLQGINQRATDMQDTGK 105
           VAKM ESKLQEN+ KLQGIN RATDMQDT K
Sbjct: 951 VAKMAESKLQENITKLQGINLRATDMQDTAK 979

[Close]

BLAST of Moc10g30200 vs. NCBI nr
Match: XP_023552248.1 (uncharacterized protein LOC111809973 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 16   IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWN--PDNKAGAVDQIKKKYGFSSAGETS 75
            + S + S K  GKLKQMKVKTEKNSAKEEQPDWN   DNKAGAVDQIKKKYGFSSAG+TS
Sbjct: 938  LASTFNSLK--GKLKQMKVKTEKNSAKEEQPDWNNAADNKAGAVDQIKKKYGFSSAGDTS 997

Query: 76   VAKMTESKLQENVKKLQGINQRATDMQDTGK 105
            VAKM ESKLQEN+ KLQGIN RATDMQDT K
Sbjct: 998  VAKMAESKLQENITKLQGINLRATDMQDTAK 1026

[Close]

BLAST of Moc10g30200 vs. ExPASy TrEMBL
Match: A0A6J1CV57 (uncharacterized protein LOC111014861 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014861 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 16  IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 75
           + S + S K  GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA
Sbjct: 857 LASTFNSFK--GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 916

Query: 76  KMTESKLQENVKKLQGINQRATDMQDTGK 105
           KMTESKLQENVKKLQGINQRATDMQDT K
Sbjct: 917 KMTESKLQENVKKLQGINQRATDMQDTAK 943

[Close]

BLAST of Moc10g30200 vs. ExPASy TrEMBL
Match: A0A6J1CWH3 (uncharacterized protein LOC111014861 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014861 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 16   IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 75
            + S + S K  GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA
Sbjct: 943  LASTFNSFK--GKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVA 1002

Query: 76   KMTESKLQENVKKLQGINQRATDMQDTGK 105
            KMTESKLQENVKKLQGINQRATDMQDT K
Sbjct: 1003 KMTESKLQENVKKLQGINQRATDMQDTAK 1029

[Close]

BLAST of Moc10g30200 vs. ExPASy TrEMBL
Match: A0A6J1L5G9 (uncharacterized protein LOC111500196 OS=Cucurbita maxima OX=3661 GN=LOC111500196 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 16   IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWN--PDNKAGAVDQIKKKYGFSSAGETS 75
            + S + S K  GKLKQMKVKTEKNSAKEEQPDWN   DNKAGAVDQIKKKYGFSSAG+TS
Sbjct: 940  LASTFNSLK--GKLKQMKVKTEKNSAKEEQPDWNNAADNKAGAVDQIKKKYGFSSAGDTS 999

Query: 76   VAKMTESKLQENVKKLQGINQRATDMQDTGK 105
            VAKM ESKLQEN+ KLQGIN RATDMQDT K
Sbjct: 1000 VAKMAESKLQENITKLQGINLRATDMQDTAK 1028

[Close]

BLAST of Moc10g30200 vs. ExPASy TrEMBL
Match: A0A6J1E6S7 (uncharacterized protein LOC111431125 OS=Cucurbita moschata OX=3662 GN=LOC111431125 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 16   IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWN--PDNKAGAVDQIKKKYGFSSAGETS 75
            + S + S K  GKLKQMKVKTEKNSAKEEQPDWN   DNKAGAVDQIKKKYGFSSAG+TS
Sbjct: 939  LASTFNSLK--GKLKQMKVKTEKNSAKEEQPDWNNAADNKAGAVDQIKKKYGFSSAGDTS 998

Query: 76   VAKMTESKLQENVKKLQGINQRATDMQDTGK 105
            VAKM ESKLQEN+ KLQGIN RATDMQDT K
Sbjct: 999  VAKMAESKLQENITKLQGINLRATDMQDTAK 1027

[Close]

BLAST of Moc10g30200 vs. ExPASy TrEMBL
Match: A0A6J1FNW7 (uncharacterized protein LOC111446607 OS=Cucurbita moschata OX=3662 GN=LOC111446607 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.0e-25
Identity = 70/91 (76.92%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 16   IESVYTSSKNSGKLKQMKVKTEKNSAKEEQPDWN--PDNKAGAVDQIKKKYGFSSAGETS 75
            + S + S K  GKLKQMK KTEKNS+KEEQ DWN   D+KAGAVDQIKKKYGFSSAGETS
Sbjct: 955  LASTFNSFK--GKLKQMKAKTEKNSSKEEQVDWNAAADSKAGAVDQIKKKYGFSSAGETS 1014

Query: 76   VAKMTESKLQENVKKLQGINQRATDMQDTGK 105
             AKM ESKLQEN KKLQGI+QRAT+MQDT K
Sbjct: 1015 DAKMAESKLQENAKKLQGISQRATEMQDTAK 1043

[Close]

BLAST of Moc10g30200 vs. TAIR 10
Match: AT4G35560.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 23   SKNSGKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVAKMTESKL 82
            S   GKLKQM  K EK+    ++   + +     VDQIKKKYGF+S+ E   AKM +SKL
Sbjct: 948  SNFKGKLKQMAAKNEKSVVTNDEK--HEEKNGATVDQIKKKYGFTSSDEMGAAKMAQSKL 1007

Query: 83   QENVKKLQGINQRATDMQDTGKVIFINGKSI 114
            Q+N+KKLQGI+ R T+M+DT K      K +
Sbjct: 1008 QDNLKKLQGISLRTTEMEDTAKSFSSTAKEL 1036

[Close]

BLAST of Moc10g30200 vs. TAIR 10
Match: AT4G35560.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 23   SKNSGKLKQMKVKTEKNSAKEEQPDWNPDNKAGAVDQIKKKYGFSSAGETSVAKMTESKL 82
            S   GKLKQM  K EK+    ++   + +     VDQIKKKYGF+S+ E   AKM +SKL
Sbjct: 949  SNFKGKLKQMAAKNEKSVVTNDEK--HEEKNGATVDQIKKKYGFTSSDEMGAAKMAQSKL 1008

Query: 83   QENVKKLQGINQRATDMQDTGKVIFINGKSI 114
            Q+N+KKLQGI+ R T+M+DT K      K +
Sbjct: 1009 QDNLKKLQGISLRTTEMEDTAKSFSSTAKEL 1037

The following BLAST results are available for this feature:

BLAST of Moc10g30200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145407.1	2.4e-32	89.89	uncharacterized protein LOC111014861 isoform X1 [Momordica charantia]	[more]
XP_022145409.1	2.4e-32	89.89	uncharacterized protein LOC111014861 isoform X2 [Momordica charantia]	[more]
XP_023552249.1	2.4e-27	81.32	uncharacterized protein LOC111809973 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG7015851.1	2.4e-27	81.32	Syntaxin-binding protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023552248.1	2.4e-27	81.32	uncharacterized protein LOC111809973 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc10g30200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g30200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV57	1.2e-32	89.89	uncharacterized protein LOC111014861 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CWH3	1.2e-32	89.89	uncharacterized protein LOC111014861 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1L5G9	1.1e-27	81.32	uncharacterized protein LOC111500196 OS=Cucurbita maxima OX=3661 GN=LOC111500196...	[more]
A0A6J1E6S7	1.1e-27	81.32	uncharacterized protein LOC111431125 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1FNW7	7.0e-25	76.92	uncharacterized protein LOC111446607 OS=Cucurbita moschata OX=3662 GN=LOC1114466...	[more]

BLAST of Moc10g30200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35560.1	1.9e-14	47.25	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G35560.2	1.9e-14	47.25	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..49
None	No IPR available	PANTHER	PTHR10241:SF27	TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN	coord: 26..105
None	No IPR available	PANTHER	PTHR10241	LETHAL 2 GIANT LARVAE PROTEIN	coord: 26..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g30200.1	Moc10g30200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0048235	pollen sperm cell differentiation
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity