Moc10g12210 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g12210
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	chr10: 9319901 .. 9322159 (+)
RNA-Seq Expression	Moc10g12210
Synteny	Moc10g12210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAACCGAACAGTAGGGAAGTCCCCTTTTGAAGTTGTTTATACTAAATTACCTAGGTTAACAGTGGACTTAGCTAATGTTCCTGTTGATTTTAGCTTAGAAGCTGCACAAATGACGGAAAGGATAACTCAACTACATAAAGAGGTGCATGATCATATTGAAGCTGTCAATGCAAAGTACAAGAAAGATGCTAATATTAAAAGGAGAATCCAGAAATTCAAAGAAGGCGCCTAGTTATGATCTATCTAACTAAAGGTCGTTTACCTACTGGATCTGTACATAAGTTACAAAAGAAGAAATTCGGACCATTTGAAGTATTGAAGAAATATGGCCTAAATGCCTATAAAATCAAGCAACCACCAGACTATAACATCATTCCAATATTCAATGTCTCAGACATCTATCCTTATGCGGCACCAGACTCGTTTAGCTTGACATCTTAACTTGAGGACGAGTTGCTTTTAAAGGAGAGAATTTGATGTAACTAACTCTATCTAAGTTAGTTTAGTTTAGTTATTTGTGTAGTTAGACTCTTACTGTTAAGCTATTAACTCTTTTACCGTGGTCTTCATCCTATAAATAGGAGGCCCTTGTATCTTTATGGATTGATTCAACTATAATAAGATTTGATTCCTCTAGTCTACACCAATATTCTTCTTCTCCTTTGTTTTTTTTTTGGGTTAATTTTTGGACTAATTTCAACCAGCTGCTTGTGTTTAAGGGGCGAGGTAAAGGGTAAAGTGAACATTGGTTCTTCTCCGACCATCAATCGACGATCTTCTCCAACAATCAGCGATGACGCACAATAATATTCTTATTCTCCTTTGTTTATTATTATTTTTTGTTTTGGTTAATTTTCGAACTCATTTCAACTGGTGGTATGTGTTTAAAGGGTGGGGTAAAGGATGAAGTAAACATTCTGGAAAGGGAGAGGATGAAGCTTATGCTTTGATTCATTTGTGGGAGATAATGGCCAATTTGTGCATCAATCATAACATTGAAATTATTTGTATAATTATTAAAAATGATTGATGAAAGCTTTGTATCTAAATTATACATTAAAATTACCCTAAAACATATATAAAAATGATGAGACGACCTTGTTGTGATAAAAAGAATTAGAACCTAACTATGGCAATGAGGTGTTTATCAATCCCGTTTTGTTGAGTTGTGTCACTAAAAAACTTTGTGCATGATAACTCTCCTAAAGAGAGTAAATTGTGTCTAAAAGTTGCATAAAATAGCCAAAGATAGCCTCACCGAGCCCCCAATATTCAATGAGTTGTGCCTAATTTAGAAGATAAATCAATGTTCTCATATGTAATGTTAGCGCTTGTATAAATGATATGATCTTGAGCATTTTGTTGCAGCTTTAATGATGCTACAACATCGGTTCCAGAAAGAGACACAAAGCAGCAAGCTAGTAGTGAAAAGACTTCTCAGCGACATTTACCATAGTAACTCGAGGTTTCACCTAGAAGTTAAAGCTGGGTCCCACAGGGCTTGTTTTGTTGCCCTAAAATCGGAAGGAGGTATAAATGCCAACAAATAGAGAAGCCTCCACACACACCAAGACAATTCCATTGTTCACTCTTGAAGGAATCAACCCCCACTCCAAGAAAACCTTCCAACCATTAGAGAAAGTCAAGGGGAGAACGGGAGCTGAGAAGAGGCCGAGAACTCTTATTGGGAGCTGATATTTAGCTCCATCTCTTCATTTTTAGCATCTTTGTATTGTTTTTATTCCTACATTTTTTTGAACCTCCTTATGGCTTTGTCTAGCTAATCATATTGTGTAAGGGGGAGATGTTGTGAACTCATTTTCTAGGTTGTGACCTTGTTGTTGCGCATTAATGATAATATATTTTGAGTTGAAGTTGATGTATCACTCTATTTTCGATGTGTTGGATCACCATGTTGAAATACCTCTTTGATAACCTTTGGAAAAATGTATTAGGGAGCGAAAGAACTTCATCTCAAGCTAGAGTCTACTTGAGTTTAGAGTGTGGTGACTTAGGAATAAGCATCATCTAGCTTGGTCATGAAAACTGTGCATGTATGGTGTTATTGTTTGTCTATGAACTTTAATGGTAGAAAATCTGGAATGTTTGGAAGAACATCTTATCTGTTTGACCACTTCATTTACTCTATTAATGTTGCAGCATAGTTAAGGTGGTCCAGAAAGAGTTGACGTCATCTCCCCCTTGCGCCCTTATTTCCGTAAGAACTTACTTAGCGATTGCGGATGTTTGTTAA

mRNA sequence

ATGCAAAACCGAACAGTAGGGAAGTCCCCTTTTGAAGTTGTTTATACTAAATTACCTAGGTTAACAGTGGACTTAGCTAATGTTCCTGTTGATTTTAGCTTAGAAGCTGCACAAATGACGGAAAGGATAACTCAACTACATAAAGAGGTGCATGATCATATTGAAGCTGTCAATGCAAAGTACAAGAAAGATGCTAATATTAAAAGGAGAATCCAGAAATTCAAAGAAGGCGCCTACTTTAATGATGCTACAACATCGGTTCCAGAAAGAGACACAAAGCAGCAAGCTAGTAGTGAAAAGACTTCTCAGCGACATTTACCATACATAGTTAAGGTGGTCCAGAAAGAGTTGACGTCATCTCCCCCTTGCGCCCTTATTTCCGTAAGAACTTACTTAGCGATTGCGGATGTTTGTTAA

Coding sequence (CDS)

ATGCAAAACCGAACAGTAGGGAAGTCCCCTTTTGAAGTTGTTTATACTAAATTACCTAGGTTAACAGTGGACTTAGCTAATGTTCCTGTTGATTTTAGCTTAGAAGCTGCACAAATGACGGAAAGGATAACTCAACTACATAAAGAGGTGCATGATCATATTGAAGCTGTCAATGCAAAGTACAAGAAAGATGCTAATATTAAAAGGAGAATCCAGAAATTCAAAGAAGGCGCCTACTTTAATGATGCTACAACATCGGTTCCAGAAAGAGACACAAAGCAGCAAGCTAGTAGTGAAAAGACTTCTCAGCGACATTTACCATACATAGTTAAGGTGGTCCAGAAAGAGTTGACGTCATCTCCCCCTTGCGCCCTTATTTCCGTAAGAACTTACTTAGCGATTGCGGATGTTTGTTAA

Protein sequence

MQNRTVGKSPFEVVYTKLPRLTVDLANVPVDFSLEAAQMTERITQLHKEVHDHIEAVNAKYKKDANIKRRIQKFKEGAYFNDATTSVPERDTKQQASSEKTSQRHLPYIVKVVQKELTSSPPCALISVRTYLAIADVC

Homology

[Close]

BLAST of Moc10g12210 vs. NCBI nr
Match: TYK28638.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-13
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
          M NR+ GKSPFE+VYT LP++T DLAN+P  +D S+EA  M ERI++LH+EV  H+E  N
Sbjct: 1  MANRSTGKSPFEIVYTSLPQVTFDLANLPSVIDVSMEAEAMAERISKLHQEVKSHLELAN 60

Query: 61 AKYKKDANIKRRIQKFKEG 78
            YK  AN  +R ++++ G
Sbjct: 61 DSYKTTANSHKRFREYQVG 79

[Close]

BLAST of Moc10g12210 vs. NCBI nr
Match: TYK26823.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

[Close]

BLAST of Moc10g12210 vs. NCBI nr
Match: KAA0033503.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

[Close]

BLAST of Moc10g12210 vs. NCBI nr
Match: KAA0032572.1 (putative retroelement [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 8   KSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVNAKYKKDA 67
           KSPFE+VY KLPRLT+DLAN+P  VD  ++A  M ER+ +LHK+V + +E +N  YKK A
Sbjct: 91  KSPFEIVYNKLPRLTIDLANIPSNVDLGMKAENMAERMAKLHKDVANQLEKMNEGYKKQA 150

Query: 68  NIKRRIQKFKE 77
           +  RR ++FKE
Sbjct: 151 SKHRRFKEFKE 161

[Close]

BLAST of Moc10g12210 vs. NCBI nr
Match: TYK11203.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
          M+NR+  K PFE+VYTK PRLT DLA++P  VD + EA  M E++ QLHKEV DH+    
Sbjct: 1  MRNRSANKCPFEIVYTKQPRLT-DLASLPTTVDINQEAESMAEKLEQLHKEVTDHLMKTT 60

Query: 61 AKYKKDANIKRRIQKFKEG 78
            YKK A++KRR  KF +G
Sbjct: 61 DSYKKAADMKRRQAKFAKG 78

[Close]

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5A7SSR7 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00420 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

[Close]

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5D3DT79 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00110 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

[Close]

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5D3CH26 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00460 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.0e-12
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
          M+NR+  K PFE+VYTK PRLT DLA++P  VD + EA  M E++ QLHKEV DH+    
Sbjct: 1  MRNRSANKCPFEIVYTKQPRLT-DLASLPTTVDINQEAESMAEKLEQLHKEVTDHLMKTT 60

Query: 61 AKYKKDANIKRRIQKFKEG 78
            YKK A++KRR  KF +G
Sbjct: 61 DSYKKAADMKRRQAKFAKG 78

[Close]

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5A7SNF3 (Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00320 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.0e-12
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 8   KSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVNAKYKKDA 67
           KSPFE+VY KLPRLT+DLAN+P  VD  ++A  M ER+ +LHK+V + +E +N  YKK A
Sbjct: 91  KSPFEIVYNKLPRLTIDLANIPSNVDLGMKAENMAERMAKLHKDVANQLEKMNEGYKKQA 150

Query: 68  NIKRRIQKFKE 77
           +  RR ++FKE
Sbjct: 151 SKHRRFKEFKE 161

[Close]

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5A7UEM2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANV--PVDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+  K PFE+VYTK PRLT DLA++   VD + EA  M E++ QLHKEV DH+    
Sbjct: 289 MRNRSTNKCPFEIVYTKQPRLTFDLASLLTVVDINQEAENMAEKLEQLHKEVIDHLMKTT 348

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YKK A+++RR  KF +G
Sbjct: 349 DSYKKAADMRRRQAKFAKG 367

The following BLAST results are available for this feature:

BLAST of Moc10g12210 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28638.1	3.9e-13	51.90	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK26823.1	1.3e-11	53.16	serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa]	[more]
KAA0033503.1	1.3e-11	53.16	serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa]	[more]
KAA0032572.1	1.6e-11	54.93	putative retroelement [Cucumis melo var. makuwa]	[more]
TYK11203.1	1.6e-11	54.43	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc10g12210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g12210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSR7	6.1e-12	53.16	Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DT79	6.1e-12	53.16	Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CH26	8.0e-12	54.43	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SNF3	8.0e-12	54.93	Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7UEM2	1.8e-11	51.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Moc10g12210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g12210.1	Moc10g12210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups