Moc10g12210 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g12210
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Locationchr10: 9319901 .. 9322159 (+)
RNA-Seq ExpressionMoc10g12210
SyntenyMoc10g12210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAACCGAACAGTAGGGAAGTCCCCTTTTGAAGTTGTTTATACTAAATTACCTAGGTTAACAGTGGACTTAGCTAATGTTCCTGTTGATTTTAGCTTAGAAGCTGCACAAATGACGGAAAGGATAACTCAACTACATAAAGAGGTGCATGATCATATTGAAGCTGTCAATGCAAAGTACAAGAAAGATGCTAATATTAAAAGGAGAATCCAGAAATTCAAAGAAGGCGCCTAGTTATGATCTATCTAACTAAAGGTCGTTTACCTACTGGATCTGTACATAAGTTACAAAAGAAGAAATTCGGACCATTTGAAGTATTGAAGAAATATGGCCTAAATGCCTATAAAATCAAGCAACCACCAGACTATAACATCATTCCAATATTCAATGTCTCAGACATCTATCCTTATGCGGCACCAGACTCGTTTAGCTTGACATCTTAACTTGAGGACGAGTTGCTTTTAAAGGAGAGAATTTGATGTAACTAACTCTATCTAAGTTAGTTTAGTTTAGTTATTTGTGTAGTTAGACTCTTACTGTTAAGCTATTAACTCTTTTACCGTGGTCTTCATCCTATAAATAGGAGGCCCTTGTATCTTTATGGATTGATTCAACTATAATAAGATTTGATTCCTCTAGTCTACACCAATATTCTTCTTCTCCTTTGTTTTTTTTTTGGGTTAATTTTTGGACTAATTTCAACCAGCTGCTTGTGTTTAAGGGGCGAGGTAAAGGGTAAAGTGAACATTGGTTCTTCTCCGACCATCAATCGACGATCTTCTCCAACAATCAGCGATGACGCACAATAATATTCTTATTCTCCTTTGTTTATTATTATTTTTTGTTTTGGTTAATTTTCGAACTCATTTCAACTGGTGGTATGTGTTTAAAGGGTGGGGTAAAGGATGAAGTAAACATTCTGGAAAGGGAGAGGATGAAGCTTATGCTTTGATTCATTTGTGGGAGATAATGGCCAATTTGTGCATCAATCATAACATTGAAATTATTTGTATAATTATTAAAAATGATTGATGAAAGCTTTGTATCTAAATTATACATTAAAATTACCCTAAAACATATATAAAAATGATGAGACGACCTTGTTGTGATAAAAAGAATTAGAACCTAACTATGGCAATGAGGTGTTTATCAATCCCGTTTTGTTGAGTTGTGTCACTAAAAAACTTTGTGCATGATAACTCTCCTAAAGAGAGTAAATTGTGTCTAAAAGTTGCATAAAATAGCCAAAGATAGCCTCACCGAGCCCCCAATATTCAATGAGTTGTGCCTAATTTAGAAGATAAATCAATGTTCTCATATGTAATGTTAGCGCTTGTATAAATGATATGATCTTGAGCATTTTGTTGCAGCTTTAATGATGCTACAACATCGGTTCCAGAAAGAGACACAAAGCAGCAAGCTAGTAGTGAAAAGACTTCTCAGCGACATTTACCATAGTAACTCGAGGTTTCACCTAGAAGTTAAAGCTGGGTCCCACAGGGCTTGTTTTGTTGCCCTAAAATCGGAAGGAGGTATAAATGCCAACAAATAGAGAAGCCTCCACACACACCAAGACAATTCCATTGTTCACTCTTGAAGGAATCAACCCCCACTCCAAGAAAACCTTCCAACCATTAGAGAAAGTCAAGGGGAGAACGGGAGCTGAGAAGAGGCCGAGAACTCTTATTGGGAGCTGATATTTAGCTCCATCTCTTCATTTTTAGCATCTTTGTATTGTTTTTATTCCTACATTTTTTTGAACCTCCTTATGGCTTTGTCTAGCTAATCATATTGTGTAAGGGGGAGATGTTGTGAACTCATTTTCTAGGTTGTGACCTTGTTGTTGCGCATTAATGATAATATATTTTGAGTTGAAGTTGATGTATCACTCTATTTTCGATGTGTTGGATCACCATGTTGAAATACCTCTTTGATAACCTTTGGAAAAATGTATTAGGGAGCGAAAGAACTTCATCTCAAGCTAGAGTCTACTTGAGTTTAGAGTGTGGTGACTTAGGAATAAGCATCATCTAGCTTGGTCATGAAAACTGTGCATGTATGGTGTTATTGTTTGTCTATGAACTTTAATGGTAGAAAATCTGGAATGTTTGGAAGAACATCTTATCTGTTTGACCACTTCATTTACTCTATTAATGTTGCAGCATAGTTAAGGTGGTCCAGAAAGAGTTGACGTCATCTCCCCCTTGCGCCCTTATTTCCGTAAGAACTTACTTAGCGATTGCGGATGTTTGTTAA

mRNA sequence

ATGCAAAACCGAACAGTAGGGAAGTCCCCTTTTGAAGTTGTTTATACTAAATTACCTAGGTTAACAGTGGACTTAGCTAATGTTCCTGTTGATTTTAGCTTAGAAGCTGCACAAATGACGGAAAGGATAACTCAACTACATAAAGAGGTGCATGATCATATTGAAGCTGTCAATGCAAAGTACAAGAAAGATGCTAATATTAAAAGGAGAATCCAGAAATTCAAAGAAGGCGCCTACTTTAATGATGCTACAACATCGGTTCCAGAAAGAGACACAAAGCAGCAAGCTAGTAGTGAAAAGACTTCTCAGCGACATTTACCATACATAGTTAAGGTGGTCCAGAAAGAGTTGACGTCATCTCCCCCTTGCGCCCTTATTTCCGTAAGAACTTACTTAGCGATTGCGGATGTTTGTTAA

Coding sequence (CDS)

ATGCAAAACCGAACAGTAGGGAAGTCCCCTTTTGAAGTTGTTTATACTAAATTACCTAGGTTAACAGTGGACTTAGCTAATGTTCCTGTTGATTTTAGCTTAGAAGCTGCACAAATGACGGAAAGGATAACTCAACTACATAAAGAGGTGCATGATCATATTGAAGCTGTCAATGCAAAGTACAAGAAAGATGCTAATATTAAAAGGAGAATCCAGAAATTCAAAGAAGGCGCCTACTTTAATGATGCTACAACATCGGTTCCAGAAAGAGACACAAAGCAGCAAGCTAGTAGTGAAAAGACTTCTCAGCGACATTTACCATACATAGTTAAGGTGGTCCAGAAAGAGTTGACGTCATCTCCCCCTTGCGCCCTTATTTCCGTAAGAACTTACTTAGCGATTGCGGATGTTTGTTAA

Protein sequence

MQNRTVGKSPFEVVYTKLPRLTVDLANVPVDFSLEAAQMTERITQLHKEVHDHIEAVNAKYKKDANIKRRIQKFKEGAYFNDATTSVPERDTKQQASSEKTSQRHLPYIVKVVQKELTSSPPCALISVRTYLAIADVC
Homology
BLAST of Moc10g12210 vs. NCBI nr
Match: TYK28638.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-13
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 1  MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
          M NR+ GKSPFE+VYT LP++T DLAN+P  +D S+EA  M ERI++LH+EV  H+E  N
Sbjct: 1  MANRSTGKSPFEIVYTSLPQVTFDLANLPSVIDVSMEAEAMAERISKLHQEVKSHLELAN 60

Query: 61 AKYKKDANIKRRIQKFKEG 78
            YK  AN  +R ++++ G
Sbjct: 61 DSYKTTANSHKRFREYQVG 79

BLAST of Moc10g12210 vs. NCBI nr
Match: TYK26823.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

BLAST of Moc10g12210 vs. NCBI nr
Match: KAA0033503.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

BLAST of Moc10g12210 vs. NCBI nr
Match: KAA0032572.1 (putative retroelement [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 8   KSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVNAKYKKDA 67
           KSPFE+VY KLPRLT+DLAN+P  VD  ++A  M ER+ +LHK+V + +E +N  YKK A
Sbjct: 91  KSPFEIVYNKLPRLTIDLANIPSNVDLGMKAENMAERMAKLHKDVANQLEKMNEGYKKQA 150

Query: 68  NIKRRIQKFKE 77
           +  RR ++FKE
Sbjct: 151 SKHRRFKEFKE 161

BLAST of Moc10g12210 vs. NCBI nr
Match: TYK11203.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 1  MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
          M+NR+  K PFE+VYTK PRLT DLA++P  VD + EA  M E++ QLHKEV DH+    
Sbjct: 1  MRNRSANKCPFEIVYTKQPRLT-DLASLPTTVDINQEAESMAEKLEQLHKEVTDHLMKTT 60

Query: 61 AKYKKDANIKRRIQKFKEG 78
            YKK A++KRR  KF +G
Sbjct: 61 DSYKKAADMKRRQAKFAKG 78

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5A7SSR7 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00420 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5D3DT79 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00110 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+ GK PFEVVY K PRLT DLA++P  +D + E  +M E+I  LHKEVHDH+    
Sbjct: 108 MKNRSTGKCPFEVVYHKQPRLTFDLASLPTTMDTNTEVEKMIEKIENLHKEVHDHLMETT 167

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YK+ A+ KRR   F EG
Sbjct: 168 ESYKRIADKKRRQATFSEG 186

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5D3CH26 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00460 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.0e-12
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 1  MQNRTVGKSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVN 60
          M+NR+  K PFE+VYTK PRLT DLA++P  VD + EA  M E++ QLHKEV DH+    
Sbjct: 1  MRNRSANKCPFEIVYTKQPRLT-DLASLPTTVDINQEAESMAEKLEQLHKEVTDHLMKTT 60

Query: 61 AKYKKDANIKRRIQKFKEG 78
            YKK A++KRR  KF +G
Sbjct: 61 DSYKKAADMKRRQAKFAKG 78

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5A7SNF3 (Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00320 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.0e-12
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 8   KSPFEVVYTKLPRLTVDLANVP--VDFSLEAAQMTERITQLHKEVHDHIEAVNAKYKKDA 67
           KSPFE+VY KLPRLT+DLAN+P  VD  ++A  M ER+ +LHK+V + +E +N  YKK A
Sbjct: 91  KSPFEIVYNKLPRLTIDLANIPSNVDLGMKAENMAERMAKLHKDVANQLEKMNEGYKKQA 150

Query: 68  NIKRRIQKFKE 77
           +  RR ++FKE
Sbjct: 151 SKHRRFKEFKE 161

BLAST of Moc10g12210 vs. ExPASy TrEMBL
Match: A0A5A7UEM2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 1   MQNRTVGKSPFEVVYTKLPRLTVDLANV--PVDFSLEAAQMTERITQLHKEVHDHIEAVN 60
           M+NR+  K PFE+VYTK PRLT DLA++   VD + EA  M E++ QLHKEV DH+    
Sbjct: 289 MRNRSTNKCPFEIVYTKQPRLTFDLASLLTVVDINQEAENMAEKLEQLHKEVIDHLMKTT 348

Query: 61  AKYKKDANIKRRIQKFKEG 78
             YKK A+++RR  KF +G
Sbjct: 349 DSYKKAADMRRRQAKFAKG 367

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK28638.13.9e-1351.90DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK26823.11.3e-1153.16serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa][more]
KAA0033503.11.3e-1153.16serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa][more]
KAA0032572.11.6e-1154.93putative retroelement [Cucumis melo var. makuwa][more]
TYK11203.11.6e-1154.43DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SSR76.1e-1253.16Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DT796.1e-1253.16Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CH268.0e-1254.43DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SNF38.0e-1254.93Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... [more]
A0A5A7UEM21.8e-1151.90Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g12210.1Moc10g12210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0043167 ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups