Moc10g06190 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g06190
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 4452931 .. 4454496 (-)
RNA-Seq Expression	Moc10g06190
Synteny	Moc10g06190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGAATTTCAGTTTTTGGAAGATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAGACTTTGGGGGAGAGACCAGCGGATATGACAGACAAAGCTTGGACTGAGATGGATGAGCAGGCCATTGCAAATATCAGAATGGCATTATCAATGGGGGTATGCAGTCTTGTGGCGAAAAAGACGACTGCAAAAGAGTTATTAAAGGCATTGCAAGACAAGTATGAAAAACCATATGCCAATACAAAAATATTTCTATGGACCAAGTATTTTAACATCCACATGGAGGAGGGAACCTCGGTGAATTCCCATATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGGAATGAGTGTCAAGATTGAGGAGGAGGTGAAAGTTATGAGGCTGTTGAAGTCTTTGCCTGACAGTTGGGAGATGATGAAGACTGCGGTGTCGAATTCGCTAGGAGAAAATAGCTTGAAATTTTCAACTATTTGTGATGCCGCCTTATCTGAGGAAGCCCGGAGAAAATTAGGAAAAATGTATGTAACTACTTCAGGGGCAGAAAATGGGGTTGAATCAACTTTGGTAGCTCAGTTTAAAGGGAAGGGCGAGATGAAGTACAACGGGAAGCAGCAACATAGGAATAATAGGGGTAGTGGAAATTCCAGTGGAGAAGTTAAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAACATTGCAGGAAGCTTAAAGAGGATCAGGAAAATGAGGACATTCTAAATTACGTGTCAGCGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGTTCATCAGAGTAGGTAGTGGACAGTGCAGCTTCGGTGCATGTAGCTTCAGACAGGAGTTGGTTCACGTCCTTTACTGCAAGAAATCATGGTGTGGTAAGAATGGGAAATGAGAGACTCTCCAAGATCAGAGGAATTGGGGATGTTCGTTTGAGAACTGACAATGGGACCGAGCTAGTTTTGCATGGTGTCAGGTATGTACCCAGTTTCATGATGAATTTGATATCAGCAGAGAAGCTGGATGACGAAGGCTACAGAAGTGAGTTTGTAGAGAATAGATGGAAACTCATGAGGGAATCCGAGATAGTGGTTGTTGGCCACAGAAAAGCTTCAGTGTATGTGTTGAGGTTTAATGTTGCCAAAGGATTAGAGAGACAAGTTATGCACAGGGCTGCAGATAGTTCAGGAGGATACTTGAAAGAACTAGCAGCATTGACAGTCGGAACAGATCAGAAGAATCTGCCATCAGTTCAAGTACAACATCTGGAAAGTAGAGGAACGGGAAAGGGGAACAGCTCAGTGAGGTGTTCGTCAGACTGTTAGTTTCGAGCCCCAGTTGTCAGACGGATTAGCAAGCTGATAAAGTCGCGTAGGCGAAAGGGTGCATTGAGAAAGACTACAGTTGGTGCTGAGGTCGATGGTGAAGTCTCTAGAGTGGCAACGGACTTGGGTGGAAGTGTCAAGTCATCAGAGAAATCTTTCTTCAAGAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCAGAGACCACTTAG

mRNA sequence

ATGGGAGAGAATTTCAGTTTTTGGAAGATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAGACTTTGGGGGAGAGACCAGCGGATATGACAGACAAAGCTTGGACTGAGATGGATGAGCAGGCCATTGCAAATATCAGAATGGCATTATCAATGGGGGTATGCAGTCTTGTGGCGAAAAAGACGACTGCAAAAGAGTTATTAAAGGCATTGCAAGACAAGTATGAAAAACCATATGCCAATACAAAAATATTTCTATGGACCAAGTATTTTAACATCCACATGGAGGAGGGAACCTCGGTGAATTCCCATATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGGAATGAGTGTCAAGATTGAGGAGGAGGTGAAAGTTATGAGGCTGTTGAAGTCTTTGCCTGACAGTTGGGAGATGATGAAGACTGCGGTGTCGAATTCGCTAGGAGAAAATAGCTTGAAATTTTCAACTATTTGTGATGCCGCCTTATCTGAGGAAGCCCGGAGAAAATTAGGAAAAATGTATGTAACTACTTCAGGGGCAGAAAATGGGGTTGAATCAACTTTGGTAGCTCAGTTTAAAGGGAAGGGCGAGATGAAGTACAACGGGAAGCAGCAACATAGGAATAATAGGGGTAGTGGAAATTCCAGTGGAGAAGTTAAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAACATTGCAGGAAGCTTAAAGAGGATCAGGAAAATGAGGACATTCTAAATTACGTGTCAGCGGAGGTGTTAGCTTGTATTGAAGAGAATAGATGGAAACTCATGAGGGAATCCGAGATAGTGGTTGTTGGCCACAGAAAAGCTTCAGTGTATGTGTTGAGGTTTAATGTTGCCAAAGGATTAGAGAGACAAGTTATGCACAGGGCTGCAGATAGTTCAGGAGGATACTTGAAAGAACTAGCAGCATTGACAGTCGGAACAGATCAGAAGAATCTGCCATCAGTTCAAGTACAACATCTGGAAAGTAGAGGAACGGGAAAGGGGAACAGCTCAGTGAGGCGAAAGGGTGCATTGAGAAAGACTACAGTTGGTGCTGAGGTCGATGGTGAAGTCTCTAGAGTGGCAACGGACTTGGGTGGAAGTGTCAAGTCATCAGAGAAATCTTTCTTCAAGAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCAGAGACCACTTAG

Coding sequence (CDS)

ATGGGAGAGAATTTCAGTTTTTGGAAGATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAGACTTTGGGGGAGAGACCAGCGGATATGACAGACAAAGCTTGGACTGAGATGGATGAGCAGGCCATTGCAAATATCAGAATGGCATTATCAATGGGGGTATGCAGTCTTGTGGCGAAAAAGACGACTGCAAAAGAGTTATTAAAGGCATTGCAAGACAAGTATGAAAAACCATATGCCAATACAAAAATATTTCTATGGACCAAGTATTTTAACATCCACATGGAGGAGGGAACCTCGGTGAATTCCCATATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGGAATGAGTGTCAAGATTGAGGAGGAGGTGAAAGTTATGAGGCTGTTGAAGTCTTTGCCTGACAGTTGGGAGATGATGAAGACTGCGGTGTCGAATTCGCTAGGAGAAAATAGCTTGAAATTTTCAACTATTTGTGATGCCGCCTTATCTGAGGAAGCCCGGAGAAAATTAGGAAAAATGTATGTAACTACTTCAGGGGCAGAAAATGGGGTTGAATCAACTTTGGTAGCTCAGTTTAAAGGGAAGGGCGAGATGAAGTACAACGGGAAGCAGCAACATAGGAATAATAGGGGTAGTGGAAATTCCAGTGGAGAAGTTAAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAACATTGCAGGAAGCTTAAAGAGGATCAGGAAAATGAGGACATTCTAAATTACGTGTCAGCGGAGGTGTTAGCTTGTATTGAAGAGAATAGATGGAAACTCATGAGGGAATCCGAGATAGTGGTTGTTGGCCACAGAAAAGCTTCAGTGTATGTGTTGAGGTTTAATGTTGCCAAAGGATTAGAGAGACAAGTTATGCACAGGGCTGCAGATAGTTCAGGAGGATACTTGAAAGAACTAGCAGCATTGACAGTCGGAACAGATCAGAAGAATCTGCCATCAGTTCAAGTACAACATCTGGAAAGTAGAGGAACGGGAAAGGGGAACAGCTCAGTGAGGCGAAAGGGTGCATTGAGAAAGACTACAGTTGGTGCTGAGGTCGATGGTGAAGTCTCTAGAGTGGCAACGGACTTGGGTGGAAGTGTCAAGTCATCAGAGAAATCTTTCTTCAAGAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCAGAGACCACTTAG

Protein sequence

MGENFSFWKMQVKDLLTCKKIHKTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLVAKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGMSVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYVTTSGAENGVESTLVAQFKGKGEMKYNGKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKHCRKLKEDQENEDILNYVSAEVLACIEENRWKLMRESEIVVVGHRKASVYVLRFNVAKGLERQVMHRAADSSGGYLKELAALTVGTDQKNLPSVQVQHLESRGTGKGNSSVRRKGALRKTTVGAEVDGEVSRVATDLGGSVKSSEKSFFKSRWVRVKKEASETT

Homology

[Close]

BLAST of Moc10g06190 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 179.5 bits (454), Expect = 5.8e-41
Identity = 97/251 (38.65%), Postives = 145/251 (57.77%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIHKTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLVA 61
           G +F+FW+MQ++D L  KK+H+ L  +P  M  + W  +D Q +  IR+ LS  V   VA
Sbjct: 16  GTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVA 75

Query: 62  KKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGMS 121
           K+ T + L+K L D YEKP AN K+FL  K F++ MEEG  V +H+NE   I+N+L  + 
Sbjct: 76  KEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVE 135

Query: 122 VKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYVT 181
           ++ ++EV+ + LL SLP+SWE M+ AVSNS+G   LKF  + D  L EE RR        
Sbjct: 136 IEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR-------- 195

Query: 182 TSGAENGVESTLVAQFKGKGEMKYN---GKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKH 241
               E  + S    + +G+ + + N   G+ + RN +G   S   V+C+ C K GHFK +
Sbjct: 196 IDTGETSMSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKTGHFKSN 255

Query: 242 CRKLKEDQENE 250
           C    + + N+
Sbjct: 256 CWAPPKKENNK 258

[Close]

BLAST of Moc10g06190 vs. NCBI nr
Match: RVW25839.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 178.7 bits (452), Expect = 9.9e-41
Identity = 103/264 (39.02%), Postives = 154/264 (58.33%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F++W+MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            K+ T  +L+KAL   YEKP AN K+ L  K FN+ M E  SV  H+NE   I N+L  +
Sbjct: 76  VKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            +  ++E++ + +L SLP+SWE M+ AVSNS+G+  LK++ I D  L+EE RR+      
Sbjct: 136 EIDFDDEIRALIVLASLPNSWEAMRMAVSNSIGKEKLKYNDIRDLILAEEIRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKGEMKYN--GKQQHRN---NRGSGNSSGEVKCFYCHKKGHF 241
             +G  +G  S L  + +G+G  K +  G+   RN   NR    SS +V+C+ C K GHF
Sbjct: 196 -DAGETSGSGSALNLETRGRGNNKNSNQGRSNSRNSNRNRSKSRSSQQVQCWNCGKTGHF 255

Query: 242 KKHCRKLKEDQENEDILNYVSAEV 260
           K+ C+  K+  E +D  N V+ EV
Sbjct: 256 KRQCKSPKKKNE-DDSANAVTEEV 271

[Close]

BLAST of Moc10g06190 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-40
Identity = 96/251 (38.25%), Postives = 144/251 (57.37%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIHKTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLVA 61
           G +F+FW+MQ++D L  KK+H+ L  +P  M  + W  +D Q +  IR+ LS  V   VA
Sbjct: 16  GTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVA 75

Query: 62  KKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGMS 121
           K+ T + L+K L D YEKP AN K+FL  K F++ MEEG  V +H+NE   I+N+L  + 
Sbjct: 76  KEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVE 135

Query: 122 VKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYVT 181
           ++ ++EV+ + L+ SLP+SWE M+ AVSNS+G   LKF  + D  L EE RR        
Sbjct: 136 IEFDDEVRALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR-------- 195

Query: 182 TSGAENGVESTLVAQFKGKGEMKYN---GKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKH 241
               E    S    + +G+ + + N   G+ + RN +G   S   V+C+ C K GHFK +
Sbjct: 196 IDTGETSTSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKTGHFKSN 255

Query: 242 CRKLKEDQENE 250
           C    + + N+
Sbjct: 256 CWAPPKKENNK 258

[Close]

BLAST of Moc10g06190 vs. NCBI nr
Match: CAN81130.1 (hypothetical protein VITISV_003944 [Vitis vinifera])

HSP 1 Score: 177.2 bits (448), Expect = 2.9e-40
Identity = 102/264 (38.64%), Postives = 153/264 (57.95%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F++W+MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            K+ T  +L+KAL   YEKP AN K+ L TK FN+ M E  SV  H+NE   I N+L  +
Sbjct: 76  VKEKTTXDLMKALSGMYEKPSANNKVHLMTKLFNLKMAENASVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            +  ++E++ + +L SLP+SWE M+ AVSNS G+  LK++ I D  L+EE RR+      
Sbjct: 136 EIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKGEMKYN--GKQQHRN---NRGSGNSSGEVKCFYCHKKGHF 241
             +G  +G  S L  + +G+G  + +  G+   RN   NR    S  +V+C+ C K GHF
Sbjct: 196 -DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 255

Query: 242 KKHCRKLKEDQENEDILNYVSAEV 260
           K+ C+  K+  E +D  N V+ EV
Sbjct: 256 KRQCKSPKKKNE-DDSANAVTEEV 271

[Close]

BLAST of Moc10g06190 vs. NCBI nr
Match: RVW90296.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 176.4 bits (446), Expect = 4.9e-40
Identity = 102/264 (38.64%), Postives = 152/264 (57.58%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F++W+MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            KK T  +L+KAL   YEKP AN K+ L  K FN+ M E  SV  H+NE   I N+L  +
Sbjct: 76  VKKKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            +  ++E++ + +L SLP+SWE M+ AVSNS G+  LK++ I D  L+EE RR+      
Sbjct: 136 EIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKGEMKYN--GKQQHRN---NRGSGNSSGEVKCFYCHKKGHF 241
             +G  +G  S L  + +G+G  + +  G+   RN   NR    S  +V+C+ C K GHF
Sbjct: 196 -DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 255

Query: 242 KKHCRKLKEDQENEDILNYVSAEV 260
           K+ C+  K+  E +D  N V+ EV
Sbjct: 256 KRQCKSPKKKNE-DDSANAVTEEV 271

[Close]

BLAST of Moc10g06190 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-21
Identity = 76/262 (29.01%), Postives = 137/262 (52.29%), Query Frame = 0


Query: 2   GEN-FSFWKMQVKDLLTCKKIHKTL---GERPADMTDKAWTEMDEQAIANIRMALSMGVC 61
           G+N FS W+ +++DLL  + +HK L    ++P  M  + W ++DE+A + IR+ LS  V 
Sbjct: 13  GDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVV 72

Query: 62  SLVAKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKL 121
           + +  + TA+ +   L+  Y       K++L  + + +HM EGT+  SH+N    ++ +L
Sbjct: 73  NNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQL 132

Query: 122 EGMSVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGK 181
             + VKIEEE K + LL SLP S++ + T + +  G+ +++   +  A L  E  RK   
Sbjct: 133 ANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRK--- 192

Query: 182 MYVTTSGAENGVESTLVAQFKGKGEMKYNGKQQHRNNRGSGNSSGEVK---CFYCHKKGH 241
                   EN  ++ L+ + +G+   + +        RG   +  + +   C+ C++ GH
Sbjct: 193 ------KPENQGQA-LITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGH 252

Query: 242 FKKHC---RKLKED---QENED 251
           FK+ C   RK K +   Q+N+D
Sbjct: 253 FKRDCPNPRKGKGETSGQKNDD 262

[Close]

BLAST of Moc10g06190 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-11
Identity = 58/249 (23.29%), Postives = 115/249 (46.18%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIHKTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLVA 61
           GE ++ WK +++ LL  + + K +     +  D +W + +  A + I   LS    +   
Sbjct: 13  GEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFAT 72

Query: 62  KKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGMS 121
              TA+++L+ L   YE+    +++ L  +  ++ +    S+ SH +   +++++L    
Sbjct: 73  SDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAG 132

Query: 122 VKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYVT 181
            KIEE  K+  LL +LP  ++ + TA+  +L E +L  + + +  L +E + K      T
Sbjct: 133 AKIEEMDKISHLLITLPSCYDGIITAI-ETLSEENLTLAFVKNRLLDQEIKIK-NDHNDT 192

Query: 182 TSGAENGVESTLVAQFKGKGEMKYNGKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKHCRK 241
           +    N +       +K      +  +         GNS  +VKC +C ++GH KK C  
Sbjct: 193 SKKVMNAIVHNNNNTYKNN---LFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDCFH 252

Query: 242 LKEDQENED 251
            K    N++
Sbjct: 253 YKRILNNKN 256

[Close]

BLAST of Moc10g06190 vs. ExPASy TrEMBL
Match: A0A2N9IKI1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 105/261 (40.23%), Postives = 154/261 (59.00%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F +W+MQ++D L  KK+H   LGE+P DM D  WT +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSRTVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            K+ T  EL+ AL   YEKP AN K+ L  K FN+ M EGT+V  H+NE   I N+L  +
Sbjct: 76  VKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            ++ ++E++ + +L SLP+SWE M+ AVSNS G+  LK++ I D  L EE RR+      
Sbjct: 136 EIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKG-EMKYN-GKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKH 241
             +G  +   S L  + +G+G +  YN G+ + R  R       +++C+ C K GH +K+
Sbjct: 196 -DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 255

Query: 242 CRKLKEDQENEDILNYVSAEV 260
           C +LK+  EN D  N V+ EV
Sbjct: 256 CWELKKKNEN-DSANVVTEEV 268

[Close]

BLAST of Moc10g06190 vs. ExPASy TrEMBL
Match: A0A2N9GHK9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 105/261 (40.23%), Postives = 154/261 (59.00%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F +W+MQ++D L  KK+H   LGE+P DM D  WT +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSRTVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            K+ T  EL+ AL   YEKP AN K+ L  K FN+ M EGT+V  H+NE   I N+L  +
Sbjct: 76  VKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            ++ ++E++ + +L SLP+SWE M+ AVSNS G+  LK++ I D  L EE RR+      
Sbjct: 136 EIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKG-EMKYN-GKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKH 241
             +G  +   S L  + +G+G +  YN G+ + R  R       +++C+ C K GH +K+
Sbjct: 196 -DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 255

Query: 242 CRKLKEDQENEDILNYVSAEV 260
           C +LK+  EN D  N V+ EV
Sbjct: 256 CWELKKKNEN-DSANVVTEEV 268

[Close]

BLAST of Moc10g06190 vs. ExPASy TrEMBL
Match: A0A2N9J3Y8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 105/261 (40.23%), Postives = 154/261 (59.00%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F +W+MQ++D L  KK+H   LGE+P DM D  WT +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSRTVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            K+ T  EL+ AL   YEKP AN K+ L  K FN+ M EGT+V  H+NE   I N+L  +
Sbjct: 76  VKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            ++ ++E++ + +L SLP+SWE M+ AVSNS G+  LK++ I D  L EE RR+      
Sbjct: 136 EIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKG-EMKYN-GKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKH 241
             +G  +   S L  + +G+G +  YN G+ + R  R       +++C+ C K GH +K+
Sbjct: 196 -DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 255

Query: 242 CRKLKEDQENEDILNYVSAEV 260
           C +LK+  EN D  N V+ EV
Sbjct: 256 CWELKKKNEN-DSANVVTEEV 268

[Close]

BLAST of Moc10g06190 vs. ExPASy TrEMBL
Match: A0A2N9G6Q3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22753 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 105/261 (40.23%), Postives = 154/261 (59.00%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F +W+MQ++D L  KK+H   LGE+P DM D  WT +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSRTVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            K+ T  EL+ AL   YEKP AN K+ L  K FN+ M EGT+V  H+NE   I N+L  +
Sbjct: 76  VKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            ++ ++E++ + +L SLP+SWE M+ AVSNS G+  LK++ I D  L EE RR+      
Sbjct: 136 EIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKG-EMKYN-GKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKH 241
             +G  +   S L  + +G+G +  YN G+ + R  R       +++C+ C K GH +K+
Sbjct: 196 -DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 255

Query: 242 CRKLKEDQENEDILNYVSAEV 260
           C +LK+  EN D  N V+ EV
Sbjct: 256 CWELKKKNEN-DSANVVTEEV 268

[Close]

BLAST of Moc10g06190 vs. ExPASy TrEMBL
Match: A0A2N9JBD5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61661 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 105/261 (40.23%), Postives = 154/261 (59.00%), Query Frame = 0


Query: 2   GENFSFWKMQVKDLLTCKKIH-KTLGERPADMTDKAWTEMDEQAIANIRMALSMGVCSLV 61
           G +F +W+MQ++D L  KK+H   LGE+P DM D  WT +D Q +  IR+ LS  V   V
Sbjct: 16  GTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSRTVAHNV 75

Query: 62  AKKTTAKELLKALQDKYEKPYANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGM 121
            K+ T  EL+ AL   YEKP AN K+ L  K FN+ M EGT+V  H+NE   I N+L  +
Sbjct: 76  VKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSV 135

Query: 122 SVKIEEEVKVMRLLKSLPDSWEMMKTAVSNSLGENSLKFSTICDAALSEEARRKLGKMYV 181
            ++ ++E++ + +L SLP+SWE M+ AVSNS G+  LK++ I D  L EE RR+      
Sbjct: 136 EIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR------ 195

Query: 182 TTSGAENGVESTLVAQFKGKG-EMKYN-GKQQHRNNRGSGNSSGEVKCFYCHKKGHFKKH 241
             +G  +   S L  + +G+G +  YN G+ + R  R       +++C+ C K GH +K+
Sbjct: 196 -DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 255

Query: 242 CRKLKEDQENEDILNYVSAEV 260
           C +LK+  EN D  N V+ EV
Sbjct: 256 CWELKKKNEN-DSANVVTEEV 268

The following BLAST results are available for this feature:

BLAST of Moc10g06190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7584790.1	5.8e-41	38.65	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
RVW25839.1	9.9e-41	39.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAG7561662.1	1.3e-40	38.25	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
CAN81130.1	2.9e-40	38.64	hypothetical protein VITISV_003944 [Vitis vinifera]	[more]
RVW90296.1	4.9e-40	38.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc10g06190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-21	29.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.0e-11	23.29	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc10g06190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IKI1	1.1e-42	40.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1	[more]
A0A2N9GHK9	1.1e-42	40.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1	[more]
A0A2N9J3Y8	1.1e-42	40.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1	[more]
A0A2N9G6Q3	1.1e-42	40.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22753 PE=4 SV=1	[more]
A0A2N9JBD5	1.1e-42	40.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61661 PE=4 SV=1	[more]

BLAST of Moc10g06190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..127
None	No IPR available	GENE3D	4.10.60.10		coord: 202..252 e-value: 1.5E-7 score: 33.1
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 37..174 e-value: 6.9E-29 score: 100.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 336..355
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 2..262
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 2..262
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 225..241 score: 8.976924
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 206..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g06190.1	Moc10g06190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding