Moc09g12250 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g12250
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr9: 10361399 .. 10361938 (+)
RNA-Seq Expression	Moc09g12250
Synteny	Moc09g12250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCGTTTCCGCTCCGGGAGTAACATCCCTTCAGTCCCAGCCCATAGGCACACATGTATCATGACTCGGTGAGCCCAACTATTGTGAGATGACCTAGGGTTGGAATTCGTGAAACCCTAGAGGGAAGATCAACGATAAATATGAAGGGGGTTACCCATTGAAGGTAAGTTAAAATACACTCAAATTACTTTGTTTGCTCAATGATTCTCCCATAGCTAACTTTGGCATCAGAGACCATGTGACAGAAGTCACACTGGTTTAGGGTTGTTCGGTTTTGCAGGTATCCGGTTCCTTGATCATCGAGTTTGGTACACATTTTGGAGAGAACCGAGAAGGCCAAAATCCAAGCATCAACAATTGGCGCCGTCTGTGAGAACGATACAAGCTATACACCCGAGCAACATGACTCCGGAAGAAAGTCCACGACGCTCTAATGACGACTGCTGTCCGAGGAGGAGGCTAAACATGGATGACCCCCTACTAGGAGGACTTGAGGACGGGACGAGCCGACTCAACTCAGAACATCGAGAATAG

mRNA sequence

ATGAAAATCCGTTTCCGCTCCGGGAGTAACATCCCTTCAGTCCCAGCCCATAGGCACACATGTATCCGGTTCCTTGATCATCGAGTTTGGTACACATTTTGGAGAGAACCGAGAAGGCCAAAATCCAAGCATCAACAATTGGCGCCGTCTGTGAGAACGATACAAGCTATACACCCGAGCAACATGACTCCGGAAGAAAGTCCACGACGCTCTAATGACGACTGCTGTCCGAGGAGGAGGCTAAACATGGATGACCCCCTACTAGGAGGACTTGAGGACGGGACGAGCCGACTCAACTCAGAACATCGAGAATAG

Coding sequence (CDS)

ATGAAAATCCGTTTCCGCTCCGGGAGTAACATCCCTTCAGTCCCAGCCCATAGGCACACATGTATCCGGTTCCTTGATCATCGAGTTTGGTACACATTTTGGAGAGAACCGAGAAGGCCAAAATCCAAGCATCAACAATTGGCGCCGTCTGTGAGAACGATACAAGCTATACACCCGAGCAACATGACTCCGGAAGAAAGTCCACGACGCTCTAATGACGACTGCTGTCCGAGGAGGAGGCTAAACATGGATGACCCCCTACTAGGAGGACTTGAGGACGGGACGAGCCGACTCAACTCAGAACATCGAGAATAG

Protein sequence

MKIRFRSGSNIPSVPAHRHTCIRFLDHRVWYTFWREPRRPKSKHQQLAPSVRTIQAIHPSNMTPEESPRRSNDDCCPRRRLNMDDPLLGGLEDGTSRLNSEHRE

Homology

[Close]

BLAST of Moc09g12250 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-06
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 62  MTPEESPRRSNDDCCPRRRLNMDDPLLGGLEDGTSRLNSEHRE 105
           MTPE SPRRS+DDC  +RRLN+ DP +GG EDGTS+ N E +E
Sbjct: 1   MTPERSPRRSDDDCSAKRRLNLGDPQVGGPEDGTSQPNQERQE 43

[Close]

BLAST of Moc09g12250 vs. NCBI nr
Match: XP_022145129.1 (uncharacterized protein LOC111014646 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-06
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 62  MTPEESPRRSNDDCCPRRRLNMDDPLLGGLEDGTSRLNSEHRE 105
           MTPE SPRRS+D+C  +RRLN+DDP +GG EDGTS+ N E +E
Sbjct: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSQPNLERQE 43

[Close]

BLAST of Moc09g12250 vs. ExPASy TrEMBL
Match: A0A6J1CUA7 (uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014646 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 62  MTPEESPRRSNDDCCPRRRLNMDDPLLGGLEDGTSRLNSEHRE 105
           MTPE SPRRS+D+C  +RRLN+DDP +GG EDGTS+ N E +E
Sbjct: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSQPNLERQE 43

[Close]

BLAST of Moc09g12250 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 62  MTPEESPRRSNDDCCPRRRLNMDDPLLGGLEDGTSRLNSEHRE 105
           MTPE SPRRS+DDC  +RRLN+ DP +GG EDGTS+ N E +E
Sbjct: 1   MTPERSPRRSDDDCSAKRRLNLGDPQVGGPEDGTSQPNQERQE 43

The following BLAST results are available for this feature:

BLAST of Moc09g12250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	4.6e-06	65.12	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022145129.1	4.6e-06	65.12	uncharacterized protein LOC111014646 [Momordica charantia]	[more]

BLAST of Moc09g12250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g12250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUA7	2.2e-06	65.12	uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DWY0	2.2e-06	65.12	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc09g12250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g12250.1	Moc09g12250.1	mRNA