Moc08g15180 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g15180
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty3-gypsy retrotransposon protein
Location	chr8: 11715024 .. 11715712 (-)
RNA-Seq Expression	Moc08g15180
Synteny	Moc08g15180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGCAATCGTGTCAAGGAAATTGTGGAGGCCCTGTTCAATTCCAATTCAGAGAGTGAATTCCCTCCTTCCTCTGCCCATTACAAAGGAACATCTAATCCGAACGTCATGTGCTTTGTCATGACGGCTGATGCATCCACCATGGAAGAAAAAATGGCGAATATGGAAAAGAAACTCCACATGTTGAGAAAGATGGTCGAAGACAGAGACATAAGATTGCCTCCCTTATGAACAAGATCAAGATTTAGAATGATGTGGACGTTACTGAGTCAAGCCAAAATCTCGCTGTAAAAGTTAGTGACAAAAGAAAGAACATCATGCAAGAAGAACAGTAGAAACATTTTGTTTCCATTGCTTCGCTGTCTGTCCAACAACTCCAAGATATGATCACAAATTTAATCAGAGTTCAGTATGGTGGACCTTCTCAAAATTCTCTCATGTACTCGAAGCCATACACCAAGAGGATTGACAATTTGAGAATGCCAACGGGATACCAGCCTCCGAAGTTCAAACACTTTGACGGAAAGGGAAATCCTAAGCAACACATTGCCCATTTCGTCGAAACATGCGAAAATGATGGCACTCGACGAGATCTAATAGTCAAACAAATCGTTCGAACACTGAAAGGCAACGCTTTTGACTGGTACACAGATCTGGAACCTGAATCCATCAACAACTGGAAGTAA

mRNA sequence

ATGACTCGCAATCGTGTCAAGGAAATTGTGGAGGCCCTGTTCAATTCCAATTCAGAGAGTGAATTCCCTCCTTCCTCTGCCCATTACAAAGGAACATCTAATCCGAACGTCATGTGCTTTGTCATGACGGCTGATGCATCCACCATGGAAGAAAAAATGGCGAATATGGAAAAGAAACTCCACATAGTTCAGTATGGTGGACCTTCTCAAAATTCTCTCATGTACTCGAAGCCATACACCAAGAGGATTGACAATTTGAGAATGCCAACGGGATACCAGCCTCCGAAGTTCAAACACTTTGACGGAAAGGGAAATCCTAAGCAACACATTGCCCATTTCGTCGAAACATGCGAAAATGATGGCACTCGACGAGATCTAATAGTCAAACAAATCGTTCGAACACTGAAAGGCAACGCTTTTGACTGGTACACAGATCTGGAACCTGAATCCATCAACAACTGGAAGTAA

Coding sequence (CDS)

ATGACTCGCAATCGTGTCAAGGAAATTGTGGAGGCCCTGTTCAATTCCAATTCAGAGAGTGAATTCCCTCCTTCCTCTGCCCATTACAAAGGAACATCTAATCCGAACGTCATGTGCTTTGTCATGACGGCTGATGCATCCACCATGGAAGAAAAAATGGCGAATATGGAAAAGAAACTCCACATAGTTCAGTATGGTGGACCTTCTCAAAATTCTCTCATGTACTCGAAGCCATACACCAAGAGGATTGACAATTTGAGAATGCCAACGGGATACCAGCCTCCGAAGTTCAAACACTTTGACGGAAAGGGAAATCCTAAGCAACACATTGCCCATTTCGTCGAAACATGCGAAAATGATGGCACTCGACGAGATCTAATAGTCAAACAAATCGTTCGAACACTGAAAGGCAACGCTTTTGACTGGTACACAGATCTGGAACCTGAATCCATCAACAACTGGAAGTAA

Protein sequence

MTRNRVKEIVEALFNSNSESEFPPSSAHYKGTSNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGYQPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESINNWK

Homology

[Close]

BLAST of Moc08g15180 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 12  ALFNSNSESEFPPSSAHYKGTSNPNVMCFVM--------TADASTMEEKMANMEKKLHIV 71
           AL  ++ ES     S+H     N N    +M        T+ AS   +++  M       
Sbjct: 118 ALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKT 177

Query: 72  QYGGPSQNSLMYSKPYTKRIDNLRMPTGYQPPKFKHFDGKGNPKQHIAHFVETCENDGTR 131
           QYGGP+Q   +YSKPYTKRIDN+RMP GYQPPKF+ FDGKGNPKQH+AHF+ETCE  GTR
Sbjct: 178 QYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTR 237

Query: 132 RDLIVKQIVRTLKGNAFDWYTDLEPESINNWK 156
            DL+VKQ VRTLKGNAFDWYTDLEPESI++W+
Sbjct: 238 GDLLVKQFVRTLKGNAFDWYTDLEPESIDSWE 269

[Close]

BLAST of Moc08g15180 vs. NCBI nr
Match: TYK14887.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 33  SNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGY 92
           S P  +  + +     ++E +A+  K     QYGGP+Q   +YSKPYTKRIDNLRMP GY
Sbjct: 151 SQPQNLTSIASLSVQQLQEMIASSIK----TQYGGPAQTFSLYSKPYTKRIDNLRMPNGY 210

Query: 93  QPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESIN 152
           QPPKF+ FDGKGNPKQH+AHF+ETCE  GTR DL+VKQ VRTLKGNAFDWY DLEPESI+
Sbjct: 211 QPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESID 269

Query: 153 NWK 156
           NW+
Sbjct: 271 NWE 269

[Close]

BLAST of Moc08g15180 vs. NCBI nr
Match: KAA0061565.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 33  SNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGY 92
           S P     + ++    ++E +A+  K     QYGGP+Q   +YSKPYTKRIDNLRMP GY
Sbjct: 132 SQPQNSTSIASSSVQQLQEMIASSIK----TQYGGPAQTFSLYSKPYTKRIDNLRMPNGY 191

Query: 93  QPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESIN 152
           QPPKF+ FDGKGNPKQH+AHF+ETCE  GTR DL+VKQ VRTLKGNAFDWY DLEPESI+
Sbjct: 192 QPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESID 250

Query: 153 NWK 156
           NW+
Sbjct: 252 NWE 250

[Close]

BLAST of Moc08g15180 vs. NCBI nr
Match: XP_022159413.1 (uncharacterized protein LOC111025834 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 64  QYGGPSQNSLMYSKPYTKRIDNLRMPTGYQPPKFKHFDGKGNPKQHIAHFVETCENDGTR 123
           QYGG SQ+SL+YSKPYTKRI++LRMP GYQPPKF+HFDGKGNPKQHIAHFVETCEN GTR
Sbjct: 9   QYGGSSQSSLLYSKPYTKRINDLRMPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTR 68

Query: 124 RDLIVKQIVRTLKGNAFDWYTDLEPESINNWK 156
            D +VKQ VRTLKGNAFDWYTDLEPE+I +W+
Sbjct: 69  GDQLVKQFVRTLKGNAFDWYTDLEPETIESWE 100

[Close]

BLAST of Moc08g15180 vs. NCBI nr
Match: KAA0061610.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 33  SNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGY 92
           S P     + +     ++E +AN  K     QYGGP+Q   +YSKPYTKRIDNLRMP GY
Sbjct: 151 SQPQNSTSIASLSVQQLQEMIANSIK----TQYGGPTQTFSLYSKPYTKRIDNLRMPNGY 210

Query: 93  QPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESIN 152
           QPPKF+ FDGKGNPKQH+AHF+ETCE  GTR DL+VKQ V+TLKGNAFDWY DLEPESI+
Sbjct: 211 QPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVQTLKGNAFDWYVDLEPESID 269

Query: 153 NWK 156
           NW+
Sbjct: 271 NWE 269

[Close]

BLAST of Moc08g15180 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.0e-40
Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 12  ALFNSNSESEFPPSSAHYKGTSNPNVMCFVM--------TADASTMEEKMANMEKKLHIV 71
           AL  ++ ES     S+H     N N    +M        T+ AS   +++  M       
Sbjct: 118 ALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKT 177

Query: 72  QYGGPSQNSLMYSKPYTKRIDNLRMPTGYQPPKFKHFDGKGNPKQHIAHFVETCENDGTR 131
           QYGGP+Q   +YSKPYTKRIDN+RMP GYQPPKF+ FDGKGNPKQH+AHF+ETCE  GTR
Sbjct: 178 QYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTR 237

Query: 132 RDLIVKQIVRTLKGNAFDWYTDLEPESINNWK 156
            DL+VKQ VRTLKGNAFDWYTDLEPESI++W+
Sbjct: 238 GDLLVKQFVRTLKGNAFDWYTDLEPESIDSWE 269

[Close]

BLAST of Moc08g15180 vs. ExPASy TrEMBL
Match: A0A5D3CSH0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00190 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.0e-40
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 33  SNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGY 92
           S P  +  + +     ++E +A+  K     QYGGP+Q   +YSKPYTKRIDNLRMP GY
Sbjct: 151 SQPQNLTSIASLSVQQLQEMIASSIK----TQYGGPAQTFSLYSKPYTKRIDNLRMPNGY 210

Query: 93  QPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESIN 152
           QPPKF+ FDGKGNPKQH+AHF+ETCE  GTR DL+VKQ VRTLKGNAFDWY DLEPESI+
Sbjct: 211 QPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESID 269

Query: 153 NWK 156
           NW+
Sbjct: 271 NWE 269

[Close]

BLAST of Moc08g15180 vs. ExPASy TrEMBL
Match: A0A5A7TJ44 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002330 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.8e-40
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 33  SNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGY 92
           S P     + +     ++E +AN  K     QYGGP+Q   +YSKPYTKRIDN+RMP GY
Sbjct: 4   SQPQNSTSIASLSVQQLQEMIANSIK----TQYGGPAQTFSLYSKPYTKRIDNMRMPHGY 63

Query: 93  QPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESIN 152
           QPPKF+ FDGKGNPKQH+AHF+ETCE  GTR DL+VKQ VRTLKGNAFDWYTDLEPESI+
Sbjct: 64  QPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESID 122

Query: 153 NWK 156
           +W+
Sbjct: 124 SWE 122

[Close]

BLAST of Moc08g15180 vs. ExPASy TrEMBL
Match: A0A5A7V6U6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001270 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.8e-40
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 33  SNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGY 92
           S P     + ++    ++E +A+  K     QYGGP+Q   +YSKPYTKRIDNLRMP GY
Sbjct: 132 SQPQNSTSIASSSVQQLQEMIASSIK----TQYGGPAQTFSLYSKPYTKRIDNLRMPNGY 191

Query: 93  QPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESIN 152
           QPPKF+ FDGKGNPKQH+AHF+ETCE  GTR DL+VKQ VRTLKGNAFDWY DLEPESI+
Sbjct: 192 QPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESID 250

Query: 153 NWK 156
           NW+
Sbjct: 252 NWE 250

[Close]

BLAST of Moc08g15180 vs. ExPASy TrEMBL
Match: A0A5A7V2W9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001750 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.8e-40
Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 33  SNPNVMCFVMTADASTMEEKMANMEKKLHIVQYGGPSQNSLMYSKPYTKRIDNLRMPTGY 92
           S P     + +     ++E +AN  K     QYGGP+Q   +YSKPYTKRIDNLRMP GY
Sbjct: 151 SQPQNSTSIASLSVQQLQEMIANSIK----TQYGGPTQTFSLYSKPYTKRIDNLRMPNGY 210

Query: 93  QPPKFKHFDGKGNPKQHIAHFVETCENDGTRRDLIVKQIVRTLKGNAFDWYTDLEPESIN 152
           QPPKF+ FDGKGNPKQH+AHF+ETCE  GTR DL+VKQ V+TLKGNAFDWY DLEPESI+
Sbjct: 211 QPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVQTLKGNAFDWYVDLEPESID 269

Query: 153 NWK 156
           NW+
Sbjct: 271 NWE 269

The following BLAST results are available for this feature:

BLAST of Moc08g15180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	1.2e-39	56.58	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
TYK14887.1	1.2e-39	64.23	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0061565.1	1.6e-39	64.23	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_022159413.1	1.6e-39	82.61	uncharacterized protein LOC111025834 [Momordica charantia]	[more]
KAA0061610.1	1.6e-39	64.23	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc08g15180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g15180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZU9	6.0e-40	56.58	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3CSH0	6.0e-40	64.23	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TJ44	7.8e-40	64.23	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00233...	[more]
A0A5A7V6U6	7.8e-40	64.23	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V2W9	7.8e-40	64.23	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Moc08g15180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g15180.1	Moc08g15180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding