Moc06g18720 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g18720
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr6: 14600340 .. 14600870 (-)
RNA-Seq Expression	Moc06g18720
Synteny	Moc06g18720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCATACGACGGGTCAACTGATCCAATCGACCACGTTGAACTGTACGAGGGTTTGATGGAGCTAAGTGGATCAAGGGACGAAATTAAGTGCAGGGCTTTTTCTTTCACTTTGAAGGGCCAAGCCCGGTCCTGGTATAGGCAATTAAAACCCAAGACCATTGGGTCTTGGAAGCAATTGAGGAAGGTTTTAATAAGCCAGTTCTCTGCGCAGCATGACACGAAAACGCCTGATACCCATCTTCTCACCATTTATCAATCAGAGGATGAGTCGCTGCGTGATTTCGTTGGAAGATTTATGGCAGAAAAGATTAAAGTCCCCGACTGTTCAGATGATGCAACCAGAATGACATTCACATCGGCTATAAATAATCCAGACTTGGTTCATTCTTTTGCCATTCAACTAGCTCGGACTTACAGCGAAGCGATTCAGCGAGCACATCAATACATGCATGCAGAGGATGTGCTTCGAGCAAAACACCTCCAACACCAAACAGTAATATCTAGGCATGCACAAGCTCGAGGGTAG

mRNA sequence

ATGAAGCCATACGACGGGTCAACTGATCCAATCGACCACGTTGAACTGTACGAGGGTTTGATGGAGCTAAGTGGATCAAGGGACGAAATTAAGTGCAGGGCTTTTTCTTTCACTTTGAAGGGCCAAGCCCGGTCCTGGTATAGGCAATTAAAACCCAAGACCATTGGGTCTTGGAAGCAATTGAGGAAGGTTTTAATAAGCCAGTTCTCTGCGCAGCATGACACGAAAACGCCTGATACCCATCTTCTCACCATTTATCAATCAGAGGATGAGTCGCTGCGTGATTTCGTTGGAAGATTTATGGCAGAAAAGATTAAAGTCCCCGACTGTTCAGATGATGCAACCAGAATGACATTCACATCGGCTATAAATAATCCAGACTTGGTTCATTCTTTTGCCATTCAACTAGCTCGGACTTACAGCGAAGCGATTCAGCGAGCACATCAATACATGCATGCAGAGGATGTGCTTCGAGCAAAACACCTCCAACACCAAACAGTAATATCTAGGCATGCACAAGCTCGAGGGTAG

Coding sequence (CDS)

ATGAAGCCATACGACGGGTCAACTGATCCAATCGACCACGTTGAACTGTACGAGGGTTTGATGGAGCTAAGTGGATCAAGGGACGAAATTAAGTGCAGGGCTTTTTCTTTCACTTTGAAGGGCCAAGCCCGGTCCTGGTATAGGCAATTAAAACCCAAGACCATTGGGTCTTGGAAGCAATTGAGGAAGGTTTTAATAAGCCAGTTCTCTGCGCAGCATGACACGAAAACGCCTGATACCCATCTTCTCACCATTTATCAATCAGAGGATGAGTCGCTGCGTGATTTCGTTGGAAGATTTATGGCAGAAAAGATTAAAGTCCCCGACTGTTCAGATGATGCAACCAGAATGACATTCACATCGGCTATAAATAATCCAGACTTGGTTCATTCTTTTGCCATTCAACTAGCTCGGACTTACAGCGAAGCGATTCAGCGAGCACATCAATACATGCATGCAGAGGATGTGCTTCGAGCAAAACACCTCCAACACCAAACAGTAATATCTAGGCATGCACAAGCTCGAGGGTAG

Protein sequence

MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQLRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFTSAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAKHLQHQTVISRHAQARG

Homology

[Close]

BLAST of Moc06g18720 vs. NCBI nr
Match: XP_022151609.1 (uncharacterized protein LOC111019523 [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 5.3e-63
Identity = 122/176 (69.32%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           MKPYD   +PIDH+ELYEGLMELS   D++KCRAFS TLKG+ARSWYRQLK K+I  W Q
Sbjct: 14  MKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQ 73

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LRKV I+QFSAQHD K  DTHLLTI+Q E ESL +FVGRF+ EKIKV DCS+D  RMTF 
Sbjct: 74  LRKVFINQFSAQHDRKKSDTHLLTIFQEEGESLHEFVGRFVTEKIKVLDCSNDVARMTFM 133

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAKHLQHQTVISRHAQARG 177
           S IN P+L+ S+A+Q  RTY+EAIQRA +YMHAEDVL+ K LQHQT  S+H +ARG
Sbjct: 134 SIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG 189

[Close]

BLAST of Moc06g18720 vs. NCBI nr
Match: XP_022159250.1 (uncharacterized protein LOC111025663 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 4.1e-31
Identity = 69/160 (43.12%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           MKPYDGS DP D+VE++EGLM+   + D IKCRAF   L   AR WYR+L  ++I ++ Q
Sbjct: 51  MKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQ 110

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LRK  ISQFS++H  +   THL TI Q E E+LR++V RF+ E++KV  CSDD+    F 
Sbjct: 111 LRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLEEQLKVAHCSDDSAMCYFL 170

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAK 161
           + + + +L      +   T++E +Q+A + +  +++L+ K
Sbjct: 171 TGLADENLTVKLGEEAPATFAEVLQKAKKVIDGQELLQTK 210

[Close]

BLAST of Moc06g18720 vs. NCBI nr
Match: XP_022141796.1 (uncharacterized protein LOC111012081 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-30
Identity = 70/170 (41.18%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           +KPYDGS DP D+VE++EGLM+   + D IKCRAF   L G AR WYR+L  ++I ++ Q
Sbjct: 60  VKPYDGSKDPKDYVEVFEGLMDFQATSDAIKCRAFQIALTGSARLWYRRLPARSISTYSQ 119

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LR+  ++QFS++H  K   THL TI Q E E+LR++V RF  E++KV  CSDD+    F 
Sbjct: 120 LRREFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFL 179

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAKHLQHQTVISR 171
           + + +  L      +   T++E +Q+  + +   ++LR K  + +  ISR
Sbjct: 180 TGLADEALTVKLGEEAPSTFTEVLQKTKKVIDGHELLRTKTGRPERKISR 229

[Close]

BLAST of Moc06g18720 vs. NCBI nr
Match: XP_022156542.1 (uncharacterized protein LOC111023421 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-30
Identity = 69/170 (40.59%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           +KPYDG+ DP D+VE++EGLM+   + D IKCRAF   L G AR WYR+L  ++I ++ Q
Sbjct: 86  VKPYDGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQ 145

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LR+  ++QFS++H  K   THL TI Q E E+LR++V RF  E++KV  CSDD+    F 
Sbjct: 146 LRREFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFL 205

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAKHLQHQTVISR 171
           + + +  L      +   T++E +Q+A + +  +++LR K  + +  I R
Sbjct: 206 TGLADEALTVKLGEEAPATFAEVLQKAKKVIDGQELLRTKTGRPERKIGR 255

[Close]

BLAST of Moc06g18720 vs. NCBI nr
Match: XP_022152854.1 (uncharacterized protein LOC111020479 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-29
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           MKPYDGS DP D+VE++E LM+   + D IKC AF   L G AR WYR+L  + I ++ Q
Sbjct: 135 MKPYDGSKDPKDYVEVFESLMDFQAATDAIKCCAFQIALTGSARLWYRRLPARLISTYSQ 194

Query: 61  LRKVLISQFSAQH-DTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTF 120
           LRK  ISQFS++H D KTP THL TI Q E E+LR++V RF  E++KV  CSDD+    F
Sbjct: 195 LRKEFISQFSSRHYDRKTP-THLATIRQKEGETLREYVTRFPEEQLKVAHCSDDSAMCYF 254

Query: 121 TSAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAK 161
            + + +  L      +   T++E +Q+  + +  +++LR K
Sbjct: 255 LTGLADETLTVKLREEAPATFAEVLQKTKKVIDGQELLRTK 294

[Close]

BLAST of Moc06g18720 vs. ExPASy TrEMBL
Match: A0A6J1DDJ7 (uncharacterized protein LOC111019523 OS=Momordica charantia OX=3673 GN=LOC111019523 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.6e-63
Identity = 122/176 (69.32%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           MKPYD   +PIDH+ELYEGLMELS   D++KCRAFS TLKG+ARSWYRQLK K+I  W Q
Sbjct: 14  MKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQ 73

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LRKV I+QFSAQHD K  DTHLLTI+Q E ESL +FVGRF+ EKIKV DCS+D  RMTF 
Sbjct: 74  LRKVFINQFSAQHDRKKSDTHLLTIFQEEGESLHEFVGRFVTEKIKVLDCSNDVARMTFM 133

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAKHLQHQTVISRHAQARG 177
           S IN P+L+ S+A+Q  RTY+EAIQRA +YMHAEDVL+ K LQHQT  S+H +ARG
Sbjct: 134 SIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG 189

[Close]

BLAST of Moc06g18720 vs. ExPASy TrEMBL
Match: A0A6J1DY58 (uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025663 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 69/160 (43.12%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           MKPYDGS DP D+VE++EGLM+   + D IKCRAF   L   AR WYR+L  ++I ++ Q
Sbjct: 51  MKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQ 110

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LRK  ISQFS++H  +   THL TI Q E E+LR++V RF+ E++KV  CSDD+    F 
Sbjct: 111 LRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLEEQLKVAHCSDDSAMCYFL 170

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAK 161
           + + + +L      +   T++E +Q+A + +  +++L+ K
Sbjct: 171 TGLADENLTVKLGEEAPATFAEVLQKAKKVIDGQELLQTK 210

[Close]

BLAST of Moc06g18720 vs. ExPASy TrEMBL
Match: A0A6J1CKB3 (uncharacterized protein LOC111012081 OS=Momordica charantia OX=3673 GN=LOC111012081 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 70/170 (41.18%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           +KPYDGS DP D+VE++EGLM+   + D IKCRAF   L G AR WYR+L  ++I ++ Q
Sbjct: 60  VKPYDGSKDPKDYVEVFEGLMDFQATSDAIKCRAFQIALTGSARLWYRRLPARSISTYSQ 119

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LR+  ++QFS++H  K   THL TI Q E E+LR++V RF  E++KV  CSDD+    F 
Sbjct: 120 LRREFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFL 179

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAKHLQHQTVISR 171
           + + +  L      +   T++E +Q+  + +   ++LR K  + +  ISR
Sbjct: 180 TGLADEALTVKLGEEAPSTFTEVLQKTKKVIDGHELLRTKTGRPERKISR 229

[Close]

BLAST of Moc06g18720 vs. ExPASy TrEMBL
Match: A0A6J1DS95 (uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023421 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30
Identity = 69/170 (40.59%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           +KPYDG+ DP D+VE++EGLM+   + D IKCRAF   L G AR WYR+L  ++I ++ Q
Sbjct: 86  VKPYDGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQ 145

Query: 61  LRKVLISQFSAQHDTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTFT 120
           LR+  ++QFS++H  K   THL TI Q E E+LR++V RF  E++KV  CSDD+    F 
Sbjct: 146 LRREFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFL 205

Query: 121 SAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAKHLQHQTVISR 171
           + + +  L      +   T++E +Q+A + +  +++LR K  + +  I R
Sbjct: 206 TGLADEALTVKLGEEAPATFAEVLQKAKKVIDGQELLRTKTGRPERKIGR 255

[Close]

BLAST of Moc06g18720 vs. ExPASy TrEMBL
Match: A0A6J1DHB3 (uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020479 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.9e-30
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = 0


Query: 1   MKPYDGSTDPIDHVELYEGLMELSGSRDEIKCRAFSFTLKGQARSWYRQLKPKTIGSWKQ 60
           MKPYDGS DP D+VE++E LM+   + D IKC AF   L G AR WYR+L  + I ++ Q
Sbjct: 135 MKPYDGSKDPKDYVEVFESLMDFQAATDAIKCCAFQIALTGSARLWYRRLPARLISTYSQ 194

Query: 61  LRKVLISQFSAQH-DTKTPDTHLLTIYQSEDESLRDFVGRFMAEKIKVPDCSDDATRMTF 120
           LRK  ISQFS++H D KTP THL TI Q E E+LR++V RF  E++KV  CSDD+    F
Sbjct: 195 LRKEFISQFSSRHYDRKTP-THLATIRQKEGETLREYVTRFPEEQLKVAHCSDDSAMCYF 254

Query: 121 TSAINNPDLVHSFAIQLARTYSEAIQRAHQYMHAEDVLRAK 161
            + + +  L      +   T++E +Q+  + +  +++LR K
Sbjct: 255 LTGLADETLTVKLREEAPATFAEVLQKTKKVIDGQELLRTK 294

The following BLAST results are available for this feature:

BLAST of Moc06g18720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151609.1	5.3e-63	69.32	uncharacterized protein LOC111019523 [Momordica charantia]	[more]
XP_022159250.1	4.1e-31	43.13	uncharacterized protein LOC111025663 [Momordica charantia]	[more]
XP_022141796.1	2.6e-30	41.18	uncharacterized protein LOC111012081 [Momordica charantia]	[more]
XP_022156542.1	3.4e-30	40.59	uncharacterized protein LOC111023421 [Momordica charantia]	[more]
XP_022152854.1	1.0e-29	44.72	uncharacterized protein LOC111020479 [Momordica charantia]	[more]

BLAST of Moc06g18720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g18720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDJ7	2.6e-63	69.32	uncharacterized protein LOC111019523 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DY58	2.0e-31	43.13	uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CKB3	1.3e-30	41.18	uncharacterized protein LOC111012081 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DS95	1.7e-30	40.59	uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DHB3	4.9e-30	44.72	uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Moc06g18720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 34..121 e-value: 1.9E-13 score: 50.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g18720.1	Moc06g18720.1	mRNA