Moc06g15020 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g15020
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr6: 11747902 .. 11748844 (-)
RNA-Seq Expression	Moc06g15020
Synteny	Moc06g15020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGCCTCGTGTCTCCCCTAGGTGCGGCCTCCCTATGGAAGGTGTTTGCATGGTTCAATACCAAGGTGAATGGAGAACGTATTGATAGTAAGTGGGAGAAGGACGTGTGACAACACATCCTACGGTCTCCTCCATTGGTTTGCAACATGAGGTTTCATACACGACCTGCGTGTTGTCCTGGAGCCACCACCCCTACGGAGAGTCTATTGTATGTAATCAAAATCAGGGCGAACTCCAGAAATCGATAAGGTCTCTTAGGTTTTGCTTCAATATTTGTCATTCCCTACGACAGGCTTATTCGGGCGAACCTCTAACGTCTGAAAATAACGGGTCACACTTATGGGAAGTTGTCAAGTTAGTTAATAACTTCTTGACCAAACAAACGGTGACTAACTATTATAGGAATAAGAGTTATTCTGGTGTAATATTTGGTTGAAAATGTCTCAATTCAGTGAAGGAGTAGCTGACTGCCCCACGGTAGCTGTTTCTCTGAATCACTGAAGCATTGTCGCAAAAATAATATTATTGATAGGGTGCATTATTACTTTTTGCTAAATTTGATTGAGTTTTAATGGATAGTGCAAGTGTCTTATATAGATTTGTTTATATTTCAGCATGTCTAAATCTTTGCCATGCTTGCCGCTGAAAACACTCAACGGCGAAAATTACGCACAATGGAAAACAAACCTTAACACGATTCTCGTTCGGTTAACTGAGGAGTGTCCTCATGCTCCCACGCCTAATGCAGCCCGAGCCAGTCGGGATGCCTATGACAGATGGATCAAGGCTAATGACAAGGCCAAGGTCTACATTTTGGCAAACATATCTGATATACTGACCAAGAAGCATGAAAGCATGGTCACCGCAAGAGAGATCATGGACTTGTTACGGGACATGTTTGGACAGTCGTCCATTCAAGCCCGACACGATGCCCTCTAG

mRNA sequence

ATGCTTGGCCTCGTGTCTCCCCTAGGTGCGGCCTCCCTATGGAAGGTGTTTGCATGGTTCAATACCAAGGTGAATGGAGAACGTATTGATAGTAACATGTCTAAATCTTTGCCATGCTTGCCGCTGAAAACACTCAACGGCGAAAATTACGCACAATGGAAAACAAACCTTAACACGATTCTCGTTCGGTTAACTGAGGAGTGTCCTCATGCTCCCACGCCTAATGCAGCCCGAGCCAGTCGGGATGCCTATGACAGATGGATCAAGGCTAATGACAAGGCCAAGGTCTACATTTTGGCAAACATATCTGATATACTGACCAAGAAGCATGAAAGCATGGTCACCGCAAGAGAGATCATGGACTTGTTACGGGACATGTTTGGACAGTCGTCCATTCAAGCCCGACACGATGCCCTCTAG

Coding sequence (CDS)

ATGCTTGGCCTCGTGTCTCCCCTAGGTGCGGCCTCCCTATGGAAGGTGTTTGCATGGTTCAATACCAAGGTGAATGGAGAACGTATTGATAGTAACATGTCTAAATCTTTGCCATGCTTGCCGCTGAAAACACTCAACGGCGAAAATTACGCACAATGGAAAACAAACCTTAACACGATTCTCGTTCGGTTAACTGAGGAGTGTCCTCATGCTCCCACGCCTAATGCAGCCCGAGCCAGTCGGGATGCCTATGACAGATGGATCAAGGCTAATGACAAGGCCAAGGTCTACATTTTGGCAAACATATCTGATATACTGACCAAGAAGCATGAAAGCATGGTCACCGCAAGAGAGATCATGGACTTGTTACGGGACATGTTTGGACAGTCGTCCATTCAAGCCCGACACGATGCCCTCTAG

Protein sequence

MLGLVSPLGAASLWKVFAWFNTKVNGERIDSNMSKSLPCLPLKTLNGENYAQWKTNLNTILVRLTEECPHAPTPNAARASRDAYDRWIKANDKAKVYILANISDILTKKHESMVTAREIMDLLRDMFGQSSIQARHDAL

Homology

[Close]

BLAST of Moc06g15020 vs. NCBI nr
Match: XP_022156751.1 (uncharacterized protein LOC111023591 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-37
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 33  MSKSLPCLPLKTLNGENYAQWKTNLNTILV------RLTEECPHAPTPNAARASRDAYDR 92
           MSKS+  L  K LN +NY QWKTNLNTILV       LTE+CP APT NAARAS+DAYDR
Sbjct: 1   MSKSIALLAAKKLNDKNYTQWKTNLNTILVVDDLRFVLTEKCPQAPTSNAARASQDAYDR 60

Query: 93  WIKANDKAKVYILANISDILTKKHESMVTAREIMDLLRDMFGQSSIQARHDAL 140
           WIKANDKAK+YILA IS++L KKH+SMVTAREIMD L+DMFGQ SIQARHDAL
Sbjct: 61  WIKANDKAKIYILATISNVLAKKHKSMVTAREIMDSLQDMFGQPSIQARHDAL 113

[Close]

BLAST of Moc06g15020 vs. NCBI nr
Match: XP_022157449.1 (uncharacterized protein LOC111024145 [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-35
Identity = 82/115 (71.30%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 31  SNMSKSLPCLPLKTLNGENYAQWKTNLNTILV------RLTEECPHAPTPNAARASRDAY 90
           S  +  +  L  +  N ENY QWKTNLNTILV       LTEECP APTPNAARASRDAY
Sbjct: 39  STSTSIIALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAARASRDAY 98

Query: 91  DRWIKANDKAKVYILANISDILTKKHESMVTAREIMDLLRDMFGQSSIQARHDAL 140
           DRWIKANDKA VYIL +ISD+L+KKHESMVTAREIMD L+D+F Q SIQARHDAL
Sbjct: 99  DRWIKANDKANVYILTSISDVLSKKHESMVTAREIMDSLQDIFRQLSIQARHDAL 153

[Close]

BLAST of Moc06g15020 vs. NCBI nr
Match: KAA0051437.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-33
Identity = 79/145 (54.48%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   MLGLVSPLGAASLWKVFAWFNTKVNGERIDSNMSKSLPCLPLKTLNGENYAQWKTNLNTI 60
           M G  S +G  SL +VFAW N KVN        +  +  L  K LNG+NYA WK+NLNTI
Sbjct: 1   MQGFASCIGVDSLRRVFAWINIKVNRGSSSHINNSIVQLLASKKLNGDNYAAWKSNLNTI 60

Query: 61  LV------RLTEECPHAPTPNAARASRDAYDRWIKANDKAKVYILANISDILTKKHESMV 120
           LV       LTEECP  PT NA R SR AYDRW+KANDKA+ YILAN+SD+L KKHES+ 
Sbjct: 61  LVVDDLRFVLTEECPQTPTSNANRTSRKAYDRWVKANDKARAYILANMSDVLAKKHESLA 120

Query: 121 TAREIMDLLRDMFGQSSIQARHDAL 140
             +EIMD L+ MFGQ     R++A+
Sbjct: 121 MTKEIMDSLKAMFGQPEWSLRYEAI 145

[Close]

BLAST of Moc06g15020 vs. NCBI nr
Match: TYK22216.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-33
Identity = 79/145 (54.48%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   MLGLVSPLGAASLWKVFAWFNTKVNGERIDSNMSKSLPCLPLKTLNGENYAQWKTNLNTI 60
           M G  S +G  SL +VFAW N KVN        +  +  L  K LNG+NYA WK+NLNTI
Sbjct: 1   MQGFASCIGVDSLRRVFAWINIKVNRGSSSHINNSIVQLLASKKLNGDNYAAWKSNLNTI 60

Query: 61  LV------RLTEECPHAPTPNAARASRDAYDRWIKANDKAKVYILANISDILTKKHESMV 120
           LV       LTEECP  PT NA R SR AYDRW+KANDKA+ YILAN+SD+L KKHES+ 
Sbjct: 61  LVVDDLRFVLTEECPQTPTSNANRTSRKAYDRWVKANDKARAYILANMSDVLAKKHESLA 120

Query: 121 TAREIMDLLRDMFGQSSIQARHDAL 140
             +EIMD L+ MFGQ     R++A+
Sbjct: 121 MTKEIMDSLKAMFGQPEWSLRYEAI 145

[Close]

BLAST of Moc06g15020 vs. NCBI nr
Match: XP_022158202.1 (uncharacterized protein LOC111024739 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 74/101 (73.27%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 40  LPLKTLNGENYAQWKTNLNTILV------RLTEECPHAPTPNAARASRDAYDRWIKANDK 99
           L ++ LNG+NY QWKTNLN ILV       LTEEC   PTPNA RASRDAYDRWIKANDK
Sbjct: 9   LAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYDRWIKANDK 68

Query: 100 AKVYILANISDILTKKHESMVTAREIMDLLRDMFGQSSIQA 135
           AKVYI A+ISD+L KKH+ MVT REIMD LRDMFGQ SIQA
Sbjct: 69  AKVYIFASISDVLAKKHDRMVTTREIMDSLRDMFGQQSIQA 109

[Close]

BLAST of Moc06g15020 vs. ExPASy TrEMBL
Match: A0A6J1DVX8 (uncharacterized protein LOC111023591 OS=Momordica charantia OX=3673 GN=LOC111023591 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 33  MSKSLPCLPLKTLNGENYAQWKTNLNTILV------RLTEECPHAPTPNAARASRDAYDR 92
           MSKS+  L  K LN +NY QWKTNLNTILV       LTE+CP APT NAARAS+DAYDR
Sbjct: 1   MSKSIALLAAKKLNDKNYTQWKTNLNTILVVDDLRFVLTEKCPQAPTSNAARASQDAYDR 60

Query: 93  WIKANDKAKVYILANISDILTKKHESMVTAREIMDLLRDMFGQSSIQARHDAL 140
           WIKANDKAK+YILA IS++L KKH+SMVTAREIMD L+DMFGQ SIQARHDAL
Sbjct: 61  WIKANDKAKIYILATISNVLAKKHKSMVTAREIMDSLQDMFGQPSIQARHDAL 113

[Close]

BLAST of Moc06g15020 vs. ExPASy TrEMBL
Match: A0A6J1DWI4 (uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024145 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.0e-36
Identity = 82/115 (71.30%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 31  SNMSKSLPCLPLKTLNGENYAQWKTNLNTILV------RLTEECPHAPTPNAARASRDAY 90
           S  +  +  L  +  N ENY QWKTNLNTILV       LTEECP APTPNAARASRDAY
Sbjct: 39  STSTSIIALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAARASRDAY 98

Query: 91  DRWIKANDKAKVYILANISDILTKKHESMVTAREIMDLLRDMFGQSSIQARHDAL 140
           DRWIKANDKA VYIL +ISD+L+KKHESMVTAREIMD L+D+F Q SIQARHDAL
Sbjct: 99  DRWIKANDKANVYILTSISDVLSKKHESMVTAREIMDSLQDIFRQLSIQARHDAL 153

[Close]

BLAST of Moc06g15020 vs. ExPASy TrEMBL
Match: A0A5A7UAN2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001890 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.8e-34
Identity = 79/145 (54.48%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   MLGLVSPLGAASLWKVFAWFNTKVNGERIDSNMSKSLPCLPLKTLNGENYAQWKTNLNTI 60
           M G  S +G  SL +VFAW N KVN        +  +  L  K LNG+NYA WK+NLNTI
Sbjct: 1   MQGFASCIGVDSLRRVFAWINIKVNRGSSSHINNSIVQLLASKKLNGDNYAAWKSNLNTI 60

Query: 61  LV------RLTEECPHAPTPNAARASRDAYDRWIKANDKAKVYILANISDILTKKHESMV 120
           LV       LTEECP  PT NA R SR AYDRW+KANDKA+ YILAN+SD+L KKHES+ 
Sbjct: 61  LVVDDLRFVLTEECPQTPTSNANRTSRKAYDRWVKANDKARAYILANMSDVLAKKHESLA 120

Query: 121 TAREIMDLLRDMFGQSSIQARHDAL 140
             +EIMD L+ MFGQ     R++A+
Sbjct: 121 MTKEIMDSLKAMFGQPEWSLRYEAI 145

[Close]

BLAST of Moc06g15020 vs. ExPASy TrEMBL
Match: A0A5D3DF48 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00990 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.8e-34
Identity = 79/145 (54.48%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   MLGLVSPLGAASLWKVFAWFNTKVNGERIDSNMSKSLPCLPLKTLNGENYAQWKTNLNTI 60
           M G  S +G  SL +VFAW N KVN        +  +  L  K LNG+NYA WK+NLNTI
Sbjct: 1   MQGFASCIGVDSLRRVFAWINIKVNRGSSSHINNSIVQLLASKKLNGDNYAAWKSNLNTI 60

Query: 61  LV------RLTEECPHAPTPNAARASRDAYDRWIKANDKAKVYILANISDILTKKHESMV 120
           LV       LTEECP  PT NA R SR AYDRW+KANDKA+ YILAN+SD+L KKHES+ 
Sbjct: 61  LVVDDLRFVLTEECPQTPTSNANRTSRKAYDRWVKANDKARAYILANMSDVLAKKHESLA 120

Query: 121 TAREIMDLLRDMFGQSSIQARHDAL 140
             +EIMD L+ MFGQ     R++A+
Sbjct: 121 MTKEIMDSLKAMFGQPEWSLRYEAI 145

[Close]

BLAST of Moc06g15020 vs. ExPASy TrEMBL
Match: A0A6J1DWL4 (uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024739 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.0e-32
Identity = 74/101 (73.27%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 40  LPLKTLNGENYAQWKTNLNTILV------RLTEECPHAPTPNAARASRDAYDRWIKANDK 99
           L ++ LNG+NY QWKTNLN ILV       LTEEC   PTPNA RASRDAYDRWIKANDK
Sbjct: 9   LAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYDRWIKANDK 68

Query: 100 AKVYILANISDILTKKHESMVTAREIMDLLRDMFGQSSIQA 135
           AKVYI A+ISD+L KKH+ MVT REIMD LRDMFGQ SIQA
Sbjct: 69  AKVYIFASISDVLAKKHDRMVTTREIMDSLRDMFGQQSIQA 109

The following BLAST results are available for this feature:

BLAST of Moc06g15020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156751.1	5.1e-37	74.34	uncharacterized protein LOC111023591 [Momordica charantia]	[more]
XP_022157449.1	1.6e-35	71.30	uncharacterized protein LOC111024145 [Momordica charantia]	[more]
KAA0051437.1	2.0e-33	54.48	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK22216.1	2.0e-33	54.48	gag/pol protein [Cucumis melo var. makuwa]	[more]
XP_022158202.1	1.4e-31	73.27	uncharacterized protein LOC111024739 [Momordica charantia]	[more]

BLAST of Moc06g15020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g15020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVX8	2.5e-37	74.34	uncharacterized protein LOC111023591 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DWI4	8.0e-36	71.30	uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7UAN2	9.8e-34	54.48	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00189...	[more]
A0A5D3DF48	9.8e-34	54.48	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G0099...	[more]
A0A6J1DWL4	7.0e-32	73.27	uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc06g15020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g15020.1	Moc06g15020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding