Moc06g06220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g06220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RING-type domain-containing protein
Location	chr6: 4484760 .. 4485603 (+)
RNA-Seq Expression	Moc06g06220
Synteny	Moc06g06220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAATGCTTCCTGGAGTAGAGTGTGCTAGAAGAAGACGGTGTCATCAGAACAAAGTATGGTCCGATTCACCAGCGATCGCCGCTCAGGCCCTAACCAGGAGATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACCCTACTCGCTTCAAATCCATCTCTGGTTCGTAAATCGCACCTCGCTCTATCGATGAATTCGAAATTTGTTCACTAGATTCGAACAAAATTGATTCAGTTTTTACTTTAAAATTCTCCAGAAGAGAAGCCTGTTAGCCGCGGTAGACGAAGACGATAAATTGGACGAAATTGCGAGAGAGGCGAAGAGGAGGTTGGACGAGCGATTGAGAACGCAGAGGAAATCAGAGGTCGAAATTGGAAGGTACTAAAACGACGCCGTTTAGAACAACACGCGACGAATTTTGCATTTCCGTAAAATATTGCTTTGTTTCTCATAGTTACAAATAATTAAAGGCCATACCATTTTATTTTTTGTTTTATTTTTTTGAAATTAAATTTGTAAATACTAGTTTTACATTTGATTATCTTCTACTTAATTTAGTTTTCAAAAATTAGTTGTTACTTAATCTAGACGTTTTTAGCAAAGATGAAAATATACCAAAACTGGGATAACTCAATTTAAATCTCTTTTCGAACACGTTGTACTAAAAGAAGTGAAAATATGTCGAAGAAATAGTGAGCAGAACATTATTTAAAAAAACATTAAATTAAAAACACAGTCTAAATATTTCGCGATTGGACGCAGTTGCAGAGGGGGAAAGTTCAAGTGGAGCAAGTTGAATTGGACAAAAAGTATGGTGAGTGCTGGTGAGACGCCTTGA

mRNA sequence

ATGGCCGGAATGCTTCCTGGAGTAGAGTGTGCTAGAAGAAGACGGTGTCATCAGAACAAAGTATGGTCCGATTCACCAGCGATCGCCGCTCAGGCCCTAACCAGGAGATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACCCTACTCGCTTCAAATCCATCTCTGAAGAGAAGCCTGTTAGCCGCGGTAGACGAAGACGATAAATTGGACGAAATTGCGAGAGAGGCGAAGAGGAGGTTGGACGAGCGATTGAGAACGCAGAGGAAATCAGAGGTCGAAATTGGAAGTTGCAGAGGGGGAAAGTTCAAGTGGAGCAAGTTGAATTGGACAAAAAGTATGGTGAGTGCTGGTGAGACGCCTTGA

Coding sequence (CDS)

ATGGCCGGAATGCTTCCTGGAGTAGAGTGTGCTAGAAGAAGACGGTGTCATCAGAACAAAGTATGGTCCGATTCACCAGCGATCGCCGCTCAGGCCCTAACCAGGAGATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACCCTACTCGCTTCAAATCCATCTCTGAAGAGAAGCCTGTTAGCCGCGGTAGACGAAGACGATAAATTGGACGAAATTGCGAGAGAGGCGAAGAGGAGGTTGGACGAGCGATTGAGAACGCAGAGGAAATCAGAGGTCGAAATTGGAAGTTGCAGAGGGGGAAAGTTCAAGTGGAGCAAGTTGAATTGGACAAAAAGTATGGTGAGTGCTGGTGAGACGCCTTGA

Protein sequence

MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTKSMVSAGETP

Homology

[Close]

BLAST of Moc06g06220 vs. NCBI nr
Match: XP_022134633.1 (uncharacterized protein LOC111006855 [Momordica charantia])

HSP 1 Score: 242.7 bits (618), Expect = 1.7e-60
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTKSMVSAGET 120
           LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTKSMVSAGET
Sbjct: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTKSMVSAGET 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of Moc06g06220 vs. NCBI nr
Match: XP_022921934.1 (uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-41
Identity = 93/112 (83.04%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTK 113
           L   DEDDKLD  AREAKRRLDERLRTQRKS          KF W+KLNWTK
Sbjct: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKSR---------KFNWTKLNWTK 103

[Close]

BLAST of Moc06g06220 vs. NCBI nr
Match: XP_023515554.1 (uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 8.7e-41
Identity = 91/111 (81.98%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP +AAQALTRRSVLCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWT 112
           L   DEDDKLD  AREAKRRLDERLRTQRKS          KF W+KLNWT
Sbjct: 61  LVEADEDDKLDGSAREAKRRLDERLRTQRKSR---------KFNWTKLNWT 102

[Close]

BLAST of Moc06g06220 vs. NCBI nr
Match: KAG6589799.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 92/112 (82.14%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHET LASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTK 113
           L   DEDDKLD  AREAKRRLDERLRTQRKS          KF W+KLNWTK
Sbjct: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKSR---------KFNWTKLNWTK 103

[Close]

BLAST of Moc06g06220 vs. NCBI nr
Match: KAG7023470.1 (hypothetical protein SDJN02_14495 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 92/112 (82.14%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHET LASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTK 113
           L   DEDDKLD  AREAKRRLDERLRTQRKS          KF W+KLNWTK
Sbjct: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKSR---------KFNWTKLNWTK 103

[Close]

BLAST of Moc06g06220 vs. ExPASy TrEMBL
Match: A0A6J1C2J4 (uncharacterized protein LOC111006855 OS=Momordica charantia OX=3673 GN=LOC111006855 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.1e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTKSMVSAGET 120
           LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTKSMVSAGET
Sbjct: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTKSMVSAGET 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of Moc06g06220 vs. ExPASy TrEMBL
Match: A0A6J1E1Y4 (uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 93/112 (83.04%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWTK 113
           L   DEDDKLD  AREAKRRLDERLRTQRKS          KF W+KLNWTK
Sbjct: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKSR---------KFNWTKLNWTK 103

[Close]

BLAST of Moc06g06220 vs. ExPASy TrEMBL
Match: A0A6J1E765 (uncharacterized protein LOC111430042 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 91/111 (81.98%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWT 112
           L   DEDDKLD  AREAKRRLDERLRTQRKS          K  W+KLNWT
Sbjct: 61  LIEADEDDKLDGSAREAKRRLDERLRTQRKSR---------KLNWTKLNWT 102

[Close]

BLAST of Moc06g06220 vs. ExPASy TrEMBL
Match: A0A6J1JME7 (uncharacterized protein LOC111485711 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485711 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.7e-39
Identity = 89/111 (80.18%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWT 112
           L   DEDDKL   AREAKRRLDERLRTQ KS          KF W+K NWT
Sbjct: 61  LIEADEDDKLVGSAREAKRRLDERLRTQMKSR---------KFNWTKFNWT 102

[Close]

BLAST of Moc06g06220 vs. ExPASy TrEMBL
Match: A0A6J1JLN2 (uncharacterized protein LOC111485711 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485711 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 9.1e-36
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVE 95
          L   DEDDKL   AREAKRRLDERLRTQ KS ++
Sbjct: 61 LIEADEDDKLVGSAREAKRRLDERLRTQMKSRMK 94

[Close]

BLAST of Moc06g06220 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-13
Identity = 51/129 (39.53%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCH------QNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNP 60
           MAGMLPGVECARRRR H      ++   +   A A    TRR    LYT+NHE+  A   
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SLKRSL---LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSKLNWT 120
             +RS+       D D+KLD  A+EAK+RL++RLR   ++        G   K   +NW+
Sbjct: 61  FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTS------SGKMVKTKGINWS 120

[Close]

BLAST of Moc06g06220 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-12
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRCH------QNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNP 60
           MAGMLPGVECARRRR H      ++   +   A A    TRR    LYT+NHE+  A   
Sbjct: 1   MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61  SLKRSL---LAAVDEDDKLDEIAREAKRRLDERLRTQRKSEVEIGSCRGGKFKWSK 108
             +RS+       D D+KLD  A+EAK+RL++RLR   ++  + G  +G K +  K
Sbjct: 61  FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTR-QNGKDKGNKLEQGK 115

The following BLAST results are available for this feature:

BLAST of Moc06g06220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134633.1	1.7e-60	100.00	uncharacterized protein LOC111006855 [Momordica charantia]	[more]
XP_022921934.1	2.3e-41	83.04	uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata]	[more]
XP_023515554.1	8.7e-41	81.98	uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo]	[more]
KAG6589799.1	1.5e-40	82.14	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG7023470.1	1.5e-40	82.14	hypothetical protein SDJN02_14495 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Moc06g06220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g06220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2J4	8.1e-61	100.00	uncharacterized protein LOC111006855 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1E1Y4	1.1e-41	83.04	uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E765	2.1e-40	81.98	uncharacterized protein LOC111430042 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JME7	6.7e-39	80.18	uncharacterized protein LOC111485711 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JLN2	9.1e-36	87.23	uncharacterized protein LOC111485711 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Moc06g06220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15580.2	3.7e-13	39.53	RING/U-box superfamily protein	[more]
AT2G15580.1	5.3e-12	41.38	RING/U-box superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g06220.1	Moc06g06220.1	mRNA