Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCAGATAGCGATGCTGATGGAGAACCAGAAGTTCGTAGAGGATCGCGAGGAGTGGTATTAGATAAGTTGATAGCTCCAGATGGAGGTAATCCGATACCAATTTCATGGATTGCAGAAGCAGGCAAACCTATTGGGTATCTAGCCAATCTATTCAATAGCGAAATTGGTTGTTTGATACATTGGAATGTTCCTTTAGAAATAAAGAAGAATAAGGACATCTCAGACAATGTTTATAATGAAATTATTCAACATTTGTTGGTAAGATAGTAATAATAGCATTATTCTATTTATCGTATAGTTGTTTAACATGGATATGATATTTCCTTAATTTTATTTGTTTACATGTGTAGAATAAATTTGAGGTCATCGATGTCACTATTTTTCATCATGTGGATTATATCAAGTATGAGATAGAGACGCGCTTCAAAGACTATCGGTGTCTTTTACATAGATACTATCGTGGATTTAAAGATCCAACAATGGCTCGACGACGCCCATATGGAAGAATTGAACAGAATGATTGGGACATGCTATGTAATAAATAGGAGACTATTGCATGGAAGGTAACTAATAATTGAATATTATTATTATTCATGTATAGAATTAATGATAAATCTTGAGGCAAAATCAGCGAAAAACAAAGCAAGTAGAAGTAAACTCTCATTTAATCATCGGGCTGGACCGAAATCATTTCTCTAGCATTAGGAAGATAAGGTATGAACTTCTGATTTGTAGTAGTATGTTATATGTTTTGCCTCTCATTATTGTTAATAATATGATGCTATAGAAAAAAGAAGATGGGACATATTTGAGCCCCTTTGAACTTTTTTACGCGACACATTGTCATCCGACAAAGGCTTGGACCAACGAAGCTGCTCAAACTTCATATGTAAGTACTAATCTGATGATATAAATTTAGTGGTAATATCTATTCAGAATTCTAGGTAATATATCTGTTTGTGTAGGAAAAAATGGTGGCATTAGTAGAACAGGCAAAAGAAGAAGGTCGAGAATTAAGTGAAGAAGATGCTATGGAAATAGCCCTCAGGAAAAGATCATCATACACTAAAGGGATGGGATATAGTCCGAAGCCACCCAGTAAAAAAGCGTCGGCAGGATGCTCACAAGAATACGTTCTGACATTGGAGGCCAGAGTTGCAAGAAATGAAGAATTATTACGGAGCCAACGAGAGGAATTATAA
mRNA sequence
ATGCCTTCAGATAGCGATGCTGATGGAGAACCAGAAGTTCGTAGAGGATCGCGAGGAGTGGTATTAGATAAGTTGATAGCTCCAGATGGAGGTAATCCGATACCAATTTCATGGATTGCAGAAGCAGGCAAACCTATTGGGTATCTAGCCAATCTATTCAATAGCGAAATTGGTTGTTTGATACATTGGAATGTTCCTTTAGAAATAAAGAAGAATAAGGACATCTCAGACAATGTTTATAATGAAATTATTCAACATTTGTTGGAAAAAATGGTGGCATTAGTAGAACAGGCAAAAGAAGAAGGTCGAGAATTAAGTGAAGAAGATGCTATGGAAATAGCCCTCAGGAAAAGATCATCATACACTAAAGGGATGGGATATAGTCCGAAGCCACCCAGTAAAAAAGCGTCGGCAGGATGCTCACAAGAATACGTTCTGACATTGGAGGCCAGAGTTGCAAGAAATGAAGAATTATTACGGAGCCAACGAGAGGAATTATAA
Coding sequence (CDS)
ATGCCTTCAGATAGCGATGCTGATGGAGAACCAGAAGTTCGTAGAGGATCGCGAGGAGTGGTATTAGATAAGTTGATAGCTCCAGATGGAGGTAATCCGATACCAATTTCATGGATTGCAGAAGCAGGCAAACCTATTGGGTATCTAGCCAATCTATTCAATAGCGAAATTGGTTGTTTGATACATTGGAATGTTCCTTTAGAAATAAAGAAGAATAAGGACATCTCAGACAATGTTTATAATGAAATTATTCAACATTTGTTGGAAAAAATGGTGGCATTAGTAGAACAGGCAAAAGAAGAAGGTCGAGAATTAAGTGAAGAAGATGCTATGGAAATAGCCCTCAGGAAAAGATCATCATACACTAAAGGGATGGGATATAGTCCGAAGCCACCCAGTAAAAAAGCGTCGGCAGGATGCTCACAAGAATACGTTCTGACATTGGAGGCCAGAGTTGCAAGAAATGAAGAATTATTACGGAGCCAACGAGAGGAATTATAA
Protein sequence
MPSDSDADGEPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEIKKNKDISDNVYNEIIQHLLEKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAGCSQEYVLTLEARVARNEELLRSQREEL
Homology
BLAST of Moc02g12000 vs. NCBI nr
Match:
XP_038895321.1 (uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida])
HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query: 10 EPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEI 69
E VR SRGV L+K A G I ++W GKPIG +A+LFN EIG L+ +PL+
Sbjct: 134 ERRVRGASRGVRLNKTTATMG--RIKVTWTPTQGKPIGDMASLFNGEIGVLVRKFIPLKY 193
Query: 70 KKNKDISDNVYNEIIQHLLEKMVALVEQ 98
+K KDI + +Y+ + + LL + + Q
Sbjct: 194 EKQKDIPNELYDILTEQLLNQFDVDISQ 219
BLAST of Moc02g12000 vs. NCBI nr
Match:
XP_038895320.1 (uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida])
HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query: 10 EPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEI 69
E VR SRGV L+K A G I ++W GKPIG +A+LFN EIG L+ +PL+
Sbjct: 134 ERRVRGASRGVRLNKTTATMG--RIKVTWTPTQGKPIGDMASLFNGEIGVLVRKFIPLKY 193
Query: 70 KKNKDISDNVYNEIIQHLLEKMVALVEQ 98
+K KDI + +Y+ + + LL + + Q
Sbjct: 194 EKQKDIPNELYDILTEQLLNQFDVDISQ 219
BLAST of Moc02g12000 vs. NCBI nr
Match:
XP_038895319.1 (uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida])
HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query: 10 EPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEI 69
E VR SRGV L+K A G I ++W GKPIG +A+LFN EIG L+ +PL+
Sbjct: 134 ERRVRGASRGVRLNKTTATMG--RIKVTWTPTQGKPIGDMASLFNGEIGVLVRKFIPLKY 193
Query: 70 KKNKDISDNVYNEIIQHLLEKMVALVEQ 98
+K KDI + +Y+ + + LL + + Q
Sbjct: 194 EKQKDIPNELYDILTEQLLNQFDVDISQ 219
BLAST of Moc02g12000 vs. NCBI nr
Match:
RVW92791.1 (hypothetical protein CK203_042549 [Vitis vinifera])
HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 57/240 (23.75%), Postives = 90/240 (37.50%), Query Frame = 0
Query: 7 ADGEPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVP 66
A + VR +RGV+LDKLI +GG P+PI+ GK G ++EIG + + P
Sbjct: 3 APNKRNVRGKTRGVILDKLIEANGGKPLPITIKPSDGKQTGKYCEKLSNEIGLTVRQHAP 62
Query: 67 LEIKK-----------------------------------------NKDISDNVYN---E 126
+ ++K K +SD N +
Sbjct: 63 VRVEKWKQMPRAEINTMLDRIKFFPCLTMKEKFALDLTQEHVKKILEKQLSDRFRNWRCD 122
Query: 127 IIQH-----------------------------------LLEKMVALVEQAKEEGR-ELS 167
+ +H EKM+ L Q EG ++
Sbjct: 123 LHKHFKKFPTVVEAKRNPHESVSNQEDWDYLCDRFSSEEFKEKMLELQRQPIAEGAVAMT 182
BLAST of Moc02g12000 vs. NCBI nr
Match:
XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])
HSP 1 Score: 56.6 bits (135), Expect = 2.3e-04
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query: 89 EKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAG-CSQEYVLT 148
E+M+ L +G E +EE+ ME L KRS+Y GMGY PKP K S+ S EYV +
Sbjct: 110 EEMITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVES 169
Query: 149 LEARVARN-EELLRSQREEL 167
LEAR+ ++ EE+ R+ +E++
Sbjct: 170 LEARLQKHEEEMARTTQEQI 189
BLAST of Moc02g12000 vs. ExPASy TrEMBL
Match:
A0A438I7V1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_042549 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 8.7e-05
Identity = 57/240 (23.75%), Postives = 90/240 (37.50%), Query Frame = 0
Query: 7 ADGEPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVP 66
A + VR +RGV+LDKLI +GG P+PI+ GK G ++EIG + + P
Sbjct: 3 APNKRNVRGKTRGVILDKLIEANGGKPLPITIKPSDGKQTGKYCEKLSNEIGLTVRQHAP 62
Query: 67 LEIKK-----------------------------------------NKDISDNVYN---E 126
+ ++K K +SD N +
Sbjct: 63 VRVEKWKQMPRAEINTMLDRIKFFPCLTMKEKFALDLTQEHVKKILEKQLSDRFRNWRCD 122
Query: 127 IIQH-----------------------------------LLEKMVALVEQAKEEGR-ELS 167
+ +H EKM+ L Q EG ++
Sbjct: 123 LHKHFKKFPTVVEAKRNPHESVSNQEDWDYLCDRFSSEEFKEKMLELQRQPIAEGAVAMT 182
BLAST of Moc02g12000 vs. ExPASy TrEMBL
Match:
A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query: 89 EKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAG-CSQEYVLT 148
E+M+ L +G E +EE+ ME L KRS+Y GMGY PKP K S+ S EYV +
Sbjct: 105 EEMITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVES 164
Query: 149 LEARVARN-EELLRSQREEL 167
LEAR+ ++ EE+ R+ +E++
Sbjct: 165 LEARLQKHEEEMARTTQEQI 184
BLAST of Moc02g12000 vs. ExPASy TrEMBL
Match:
A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query: 89 EKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAG-CSQEYVLT 148
E+M+ L +G E +EE+ ME L KRS+Y GMGY PKP K S+ S EYV +
Sbjct: 110 EEMITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVES 169
Query: 149 LEARVARN-EELLRSQREEL 167
LEAR+ ++ EE+ R+ +E++
Sbjct: 170 LEARLQKHEEEMARTTQEQI 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038895321.1 | 3.0e-07 | 40.91 | uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida] | [more] |
XP_038895320.1 | 3.0e-07 | 40.91 | uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida] | [more] |
XP_038895319.1 | 3.0e-07 | 40.91 | uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida] | [more] |
RVW92791.1 | 1.8e-04 | 23.75 | hypothetical protein CK203_042549 [Vitis vinifera] | [more] |
XP_022148911.1 | 2.3e-04 | 43.75 | uncharacterized protein LOC111017461 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A438I7V1 | 8.7e-05 | 23.75 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_042549 PE=4 SV=1 | [more] |
A0A6J1CQT5 | 1.1e-04 | 43.75 | uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
A0A6J1D6S9 | 1.1e-04 | 43.75 | uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
Match Name | E-value | Identity | Description | |