Moc02g03090 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g03090
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Photosystem II protein D1
Location	chr2: 2356923 .. 2357660 (+)
RNA-Seq Expression	Moc02g03090
Synteny	Moc02g03090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTATTCCCCAGATACCGTCATTGCTTCTTCTCCGGGAAAAGAAGTCCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGGGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACAGATGACTTCCGCCACGTCAAGACGACACTCTACCGCTGA

mRNA sequence

ATGCTTATTCCCCAGATACCGTCATTGCTTCTTCTCCGGGAAAAGAAGTCCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGGGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACAGATGACTTCCGCCACGTCAAGACGACACTCTACCGCTGA

Coding sequence (CDS)

ATGCTTATTCCCCAGATACCGTCATTGCTTCTTCTCCGGGAAAAGAAGTCCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGGGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACAGATGACTTCCGCCACGTCAAGACGACACTCTACCGCTGA

Protein sequence

MLIPQIPSLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR

Homology

[Close]

BLAST of Moc02g03090 vs. NCBI nr
Match: VVA28225.1 (PREDICTED: conserved [Prunus dulcis])

HSP 1 Score: 221.1 bits (562), Expect = 8.0e-54
Identity = 117/159 (73.58%), Postives = 124/159 (77.99%), Query Frame = 0


Query: 33  LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKG 92
           LSP   + PL P     +G     Q  +Q  +P       CSSAYG LAAVSSCCSPPKG
Sbjct: 142 LSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGELAAVSSCCSPPKG 201

Query: 93  RFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASY 152
           RFLRVTHPSATG TTSHKA+SELSFIPRHNL PC+SYS GVRSQKYSHP+PLTSIPRASY
Sbjct: 202 RFLRVTHPSATGTTTSHKADSELSFIPRHNLDPCSSYSPGVRSQKYSHPYPLTSIPRASY 261

Query: 153 PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR 186
           PFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Sbjct: 262 PFSFHHGGKASKNRKTHIRFRDNQARTDDFHHVKVTLYR 300

[Close]

BLAST of Moc02g03090 vs. NCBI nr
Match: KAF1876762.1 (hypothetical protein Lal_00044213 [Lupinus albus] >KAF1876822.1 hypothetical protein Lal_00035386 [Lupinus albus])

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-46
Identity = 118/179 (65.92%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 19  TRRPSTSTRHCSVR---LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSS 78
           TRRPSTSTRHCS     LSP   + PL P     +G     Q  +Q  +P       CSS
Sbjct: 2   TRRPSTSTRHCSESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSS 61

Query: 79  AYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS-----HKANSELSFIPRHNLYPCASYS 138
           AYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS     +KA+SE SFIPR NLYPCASYS
Sbjct: 62  AYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSRPTCMYKADSEFSFIPRQNLYPCASYS 121

Query: 139 LGVRSQKYSHPHPLTSIPRASY--PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKT 182
            GVRSQKYS P PL SIP ASY  PFSFDH  G  +NRKTHIGFR NQARTDD   VK+
Sbjct: 122 PGVRSQKYS-PPPLPSIPLASYHSPFSFDH--GIKQNRKTHIGFRGNQARTDDLHRVKS 177

[Close]

BLAST of Moc02g03090 vs. NCBI nr
Match: MBA0642196.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-41
Identity = 97/166 (58.43%), Postives = 106/166 (63.86%), Query Frame = 0


Query: 19  TRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVS 78
           TR PSTSTRHCS+RLSPI ENSPL PP+ VW       A    G       AYGVLA +S
Sbjct: 2   TRGPSTSTRHCSIRLSPITENSPLQPPIKVWHCLSPSVADHPLGLATDHRLAYGVLAVIS 61

Query: 79  SCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPL 138
           SCCSPPKGRFLR+T+PSATGNTTS K  S+LSF+PRHNLYPCASY               
Sbjct: 62  SCCSPPKGRFLRITYPSATGNTTSQKVGSKLSFVPRHNLYPCASY--------------- 121

Query: 139 TSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLY 185
                  +P      G A KNRKTHIGFRDNQAR DDF HVK  +Y
Sbjct: 122 -------FP------GEARKNRKTHIGFRDNQARNDDFHHVKARIY 139

[Close]

BLAST of Moc02g03090 vs. NCBI nr
Match: KAB5511298.1 (hypothetical protein DKX38_030093 [Salix brachista])

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-40
Identity = 113/184 (61.41%), Postives = 122/184 (66.30%), Query Frame = 0


Query: 8   SLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYAS-PSSGGFL- 67
           SLLLLREKK TTR   TSTRHCSV+LSPIAENSPLLPPVGVWAVSQ  +   P++   L 
Sbjct: 391 SLLLLREKKFTTR---TSTRHCSVKLSPIAENSPLLPPVGVWAVSQCDHPKRPATDHRLG 450

Query: 68  ------LCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYP 127
                 L +       A SS CS   G  L                 + LSF     LYP
Sbjct: 451 KLLPHQLANQTRAPPRADSSFCSSAYGTKL---------------IRNCLSF---QGLYP 510

Query: 128 CASYSLGVRSQKYSHPHP--LTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDF 181
           CASYSL VRS+KYSHP+P  LTSIPRASYPFSFDH GGGAS+NRKTHIGFRDNQARTDDF
Sbjct: 511 CASYSLRVRSKKYSHPYPLTLTSIPRASYPFSFDHGGGGASQNRKTHIGFRDNQARTDDF 553

[Close]

BLAST of Moc02g03090 vs. NCBI nr
Match: PHU30032.1 (Photosystem II protein D1 [Capsicum chinense])

HSP 1 Score: 167.9 bits (424), Expect = 8.1e-38
Identity = 102/173 (58.96%), Postives = 111/173 (64.16%), Query Frame = 0


Query: 17  STTRRPSTSTRHCSVRLSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSA 76
           ST   PS  +  C   LSP   + PL P     +G     Q  +Q  +P       CSSA
Sbjct: 4   STRLSPSKESGLC---LSPSVVDHPLGPATDHRLGKILPYQLANQTRAPPRVDSSFCSSA 63

Query: 77  YGVLAAVSSCCSPPKGRF---LRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGV 136
           YGVLAAVSSCCSPPKGR    +R        +    KANSELSFIPRHNLYPCASYS GV
Sbjct: 64  YGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGV 123

Query: 137 RSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK 181
            SQKYSHP PLTSIPRASYPFS + GGGA+  RKT IG RDNQARTDDF HVK
Sbjct: 124 HSQKYSHPCPLTSIPRASYPFSLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173

[Close]

BLAST of Moc02g03090 vs. ExPASy TrEMBL
Match: A0A5E4FJV7 (PREDICTED: conserved OS=Prunus dulcis OX=3755 GN=ALMOND_2B024298 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.9e-54
Identity = 117/159 (73.58%), Postives = 124/159 (77.99%), Query Frame = 0


Query: 33  LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKG 92
           LSP   + PL P     +G     Q  +Q  +P       CSSAYG LAAVSSCCSPPKG
Sbjct: 142 LSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGELAAVSSCCSPPKG 201

Query: 93  RFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASY 152
           RFLRVTHPSATG TTSHKA+SELSFIPRHNL PC+SYS GVRSQKYSHP+PLTSIPRASY
Sbjct: 202 RFLRVTHPSATGTTTSHKADSELSFIPRHNLDPCSSYSPGVRSQKYSHPYPLTSIPRASY 261

Query: 153 PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR 186
           PFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Sbjct: 262 PFSFHHGGKASKNRKTHIRFRDNQARTDDFHHVKVTLYR 300

[Close]

BLAST of Moc02g03090 vs. ExPASy TrEMBL
Match: A0A6N2K292 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20803 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 4.2e-48
Identity = 122/200 (61.00%), Postives = 132/200 (66.00%), Query Frame = 0


Query: 1   MLIPQIPSLLLLREKKS-------------TTRRPSTSTRHCSVRLSPIAENSPLLPP-- 60
           MLIPQIPSLLLL E+ S             ++ RP     HC   L P   + PL P   
Sbjct: 1   MLIPQIPSLLLLWERSSRPVGLLPPRGIAPSSFRPLRKIPHCC--LPPSVADHPLGPATD 60

Query: 61  --VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTT 120
             +G     Q  +Q  +P       CSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTT
Sbjct: 61  HRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTT 120

Query: 121 SHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDH-GGGASKNR 180
           S              LYPCASYSL VRS+KYSHP+PLTSIPRASYPFSFDH GGGAS+NR
Sbjct: 121 S-------------RLYPCASYSLRVRSKKYSHPYPLTSIPRASYPFSFDHGGGGASQNR 180

[Close]

BLAST of Moc02g03090 vs. ExPASy TrEMBL
Match: A0A6A5N1F4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.3e-46
Identity = 118/179 (65.92%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 19  TRRPSTSTRHCSVR---LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSS 78
           TRRPSTSTRHCS     LSP   + PL P     +G     Q  +Q  +P       CSS
Sbjct: 2   TRRPSTSTRHCSESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSS 61

Query: 79  AYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS-----HKANSELSFIPRHNLYPCASYS 138
           AYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS     +KA+SE SFIPR NLYPCASYS
Sbjct: 62  AYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSRPTCMYKADSEFSFIPRQNLYPCASYS 121

Query: 139 LGVRSQKYSHPHPLTSIPRASY--PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKT 182
            GVRSQKYS P PL SIP ASY  PFSFDH  G  +NRKTHIGFR NQARTDD   VK+
Sbjct: 122 PGVRSQKYS-PPPLPSIPLASYHSPFSFDH--GIKQNRKTHIGFRGNQARTDDLHRVKS 177

[Close]

BLAST of Moc02g03090 vs. ExPASy TrEMBL
Match: A0A7J8TVE3 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_026629 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.9e-42
Identity = 97/166 (58.43%), Postives = 106/166 (63.86%), Query Frame = 0


Query: 19  TRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVS 78
           TR PSTSTRHCS+RLSPI ENSPL PP+ VW       A    G       AYGVLA +S
Sbjct: 2   TRGPSTSTRHCSIRLSPITENSPLQPPIKVWHCLSPSVADHPLGLATDHRLAYGVLAVIS 61

Query: 79  SCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPL 138
           SCCSPPKGRFLR+T+PSATGNTTS K  S+LSF+PRHNLYPCASY               
Sbjct: 62  SCCSPPKGRFLRITYPSATGNTTSQKVGSKLSFVPRHNLYPCASY--------------- 121

Query: 139 TSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLY 185
                  +P      G A KNRKTHIGFRDNQAR DDF HVK  +Y
Sbjct: 122 -------FP------GEARKNRKTHIGFRDNQARNDDFHHVKARIY 139

[Close]

BLAST of Moc02g03090 vs. ExPASy TrEMBL
Match: A0A5N5IVD9 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030093 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 113/184 (61.41%), Postives = 122/184 (66.30%), Query Frame = 0


Query: 8   SLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYAS-PSSGGFL- 67
           SLLLLREKK TTR   TSTRHCSV+LSPIAENSPLLPPVGVWAVSQ  +   P++   L 
Sbjct: 391 SLLLLREKKFTTR---TSTRHCSVKLSPIAENSPLLPPVGVWAVSQCDHPKRPATDHRLG 450

Query: 68  ------LCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYP 127
                 L +       A SS CS   G  L                 + LSF     LYP
Sbjct: 451 KLLPHQLANQTRAPPRADSSFCSSAYGTKL---------------IRNCLSF---QGLYP 510

Query: 128 CASYSLGVRSQKYSHPHP--LTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDF 181
           CASYSL VRS+KYSHP+P  LTSIPRASYPFSFDH GGGAS+NRKTHIGFRDNQARTDDF
Sbjct: 511 CASYSLRVRSKKYSHPYPLTLTSIPRASYPFSFDHGGGGASQNRKTHIGFRDNQARTDDF 553

The following BLAST results are available for this feature:

BLAST of Moc02g03090 vs. NCBI nr


Match Name	E-value	Identity	Description
VVA28225.1	8.0e-54	73.58	PREDICTED: conserved [Prunus dulcis]	[more]
KAF1876762.1	4.7e-46	65.92	hypothetical protein Lal_00044213 [Lupinus albus] >KAF1876822.1 hypothetical pro...	[more]
MBA0642196.1	2.0e-41	58.43	hypothetical protein [Gossypium klotzschianum]	[more]
KAB5511298.1	3.0e-40	61.41	hypothetical protein DKX38_030093 [Salix brachista]	[more]
PHU30032.1	8.1e-38	58.96	Photosystem II protein D1 [Capsicum chinense]	[more]

BLAST of Moc02g03090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g03090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5E4FJV7	3.9e-54	73.58	PREDICTED: conserved OS=Prunus dulcis OX=3755 GN=ALMOND_2B024298 PE=4 SV=1	[more]
A0A6N2K292	4.2e-48	61.00	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20803 PE=3 SV=1	[more]
A0A6A5N1F4	2.3e-46	65.92	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1	[more]
A0A7J8TVE3	9.9e-42	58.43	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_026629 PE=4...	[more]
A0A5N5IVD9	1.4e-40	61.41	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030093 PE=4 SV=1	[more]

BLAST of Moc02g03090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890:SF7	BNAUNNG00850D PROTEIN	coord: 97..184
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 97..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g03090.1	Moc02g03090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome