Moc01g16140 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g16140
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr1: 10408992 .. 10409416 (+)
RNA-Seq Expression	Moc01g16140
Synteny	Moc01g16140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGCCAAACGGTGGCAAACTTCATTGCTGAGCTCACTCCGTTCTCGAGCTCGGGCAAAGACAACTTGGATAGATGGATCCTTAACGTCGATAGATCCTCAAACGAAAAAGGTAGTAGGGTCGGAGTTCTTCTCCAAACACCTAGTGGTGATCAGTTCGAATACGCAGTAAGGTTCAGCTTCCCAACTTCAAACAACGAGGTAGAGTATGAAGCGATAATAGCATGATTGCACATGGCTGAAGCCATAGGGGCCACACGCCTGGACATAAGGAGTGGCTCGCAACTCATAGTCAATCAAATCACCAAGGAATACCAGGCCAAAGACGACAGGATGGAGAGATACCTACACAAGGTATGCGAGTTGTTGTCTCGGTTCCAAAAGTAGACTATAGAGCGGGTACCTCAGGCAGAAAATTCTAA

mRNA sequence

ATGAAGGGCCAAACGGTGGCAAACTTCATTGCTGAGCTCACTCCGTTCTCGAGCTCGGGCAAAGACAACTTGGATAGATGGATCCTTAACGTCGATAGATCCTCAAACGAAAAAGGTAGTAGGGTCGGAGTTCTTCTCCAAACACCTAGTGGTGATCAGTTCGAATACGCAGTAAGGGGCCACACGCCTGGACATAAGGAGTGGCTCGCAACTCATAGTCAATCAAATCACCAAGGAATACCAGGCCAAAGACGACAGGATGGAGAGATACCTACACAAGGTATGCGAGTTGTTGTCTCGGTTCCAAAAGTAGACTATAGAGCGGGTACCTCAGGCAGAAAATTCTAA

Coding sequence (CDS)

ATGAAGGGCCAAACGGTGGCAAACTTCATTGCTGAGCTCACTCCGTTCTCGAGCTCGGGCAAAGACAACTTGGATAGATGGATCCTTAACGTCGATAGATCCTCAAACGAAAAAGGTAGTAGGGTCGGAGTTCTTCTCCAAACACCTAGTGGTGATCAGTTCGAATACGCAGTAAGGGGCCACACGCCTGGACATAAGGAGTGGCTCGCAACTCATAGTCAATCAAATCACCAAGGAATACCAGGCCAAAGACGACAGGATGGAGAGATACCTACACAAGGTATGCGAGTTGTTGTCTCGGTTCCAAAAGTAGACTATAGAGCGGGTACCTCAGGCAGAAAATTCTAA

Protein sequence

MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVRGHTPGHKEWLATHSQSNHQGIPGQRRQDGEIPTQGMRVVVSVPKVDYRAGTSGRKF

Homology

[Close]

BLAST of Moc01g16140 vs. NCBI nr
Match: XP_022150100.1 (uncharacterized protein LOC111018362 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ VANFIAELTP S   + +L  W + VD SSNE+G   G+LL  PSG++FEYA+R
Sbjct: 266 LKGQAVANFIAELTPPSQLTESDLS-WTIYVDGSSNERGCGAGILLLAPSGERFEYALR 323

[Close]

BLAST of Moc01g16140 vs. NCBI nr
Match: XP_022158591.1 (uncharacterized protein LOC111025048 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-08
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ +A+FIAELTP   S K +L  W + VD SSNE+G   G+LL  PSG++FEYA+R
Sbjct: 220 LKGQAMADFIAELTPPLQSAKSDLP-WTIYVDESSNERGCGAGILLLAPSGERFEYALR 277

[Close]

BLAST of Moc01g16140 vs. NCBI nr
Match: XP_022146375.1 (uncharacterized protein LOC111015604 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 9.2e-08
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ VA+FIAELTP   S K +L  W + VD SSNEKG   G+LL  P G++FEYA+R
Sbjct: 202 LKGQAVADFIAELTPPPLSAKSDLP-WTIYVDGSSNEKGCGAGILLLAPGGERFEYALR 259

[Close]

BLAST of Moc01g16140 vs. NCBI nr
Match: XP_022151715.1 (uncharacterized protein LOC111019628 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQTVA+FI ELTP S S + +L  W + VD SSNE+G   G+LL  P G++FEYA+R
Sbjct: 75  LKGQTVADFIVELTPPSQSTESDLS-WTIYVDGSSNERGYGAGILLLAPGGERFEYALR 132

[Close]

BLAST of Moc01g16140 vs. NCBI nr
Match: XP_022155870.1 (uncharacterized protein LOC111022883 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ VA+FIAELTP S S + +L  W + VD SSNE+G   G+LL  P G++FEYA+R
Sbjct: 75  LKGQAVADFIAELTPPSQSTESDLS-WTIYVDGSSNERGCGAGILLLAPGGERFEYALR 132

[Close]

BLAST of Moc01g16140 vs. ExPASy TrEMBL
Match: A0A6J1D7J6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-08
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ VANFIAELTP S   + +L  W + VD SSNE+G   G+LL  PSG++FEYA+R
Sbjct: 266 LKGQAVANFIAELTPPSQLTESDLS-WTIYVDGSSNERGCGAGILLLAPSGERFEYALR 323

[Close]

BLAST of Moc01g16140 vs. ExPASy TrEMBL
Match: A0A6J1E1C7 (uncharacterized protein LOC111025048 OS=Momordica charantia OX=3673 GN=LOC111025048 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ +A+FIAELTP   S K +L  W + VD SSNE+G   G+LL  PSG++FEYA+R
Sbjct: 220 LKGQAMADFIAELTPPLQSAKSDLP-WTIYVDESSNERGCGAGILLLAPSGERFEYALR 277

[Close]

BLAST of Moc01g16140 vs. ExPASy TrEMBL
Match: A0A6J1CX44 (uncharacterized protein LOC111015604 OS=Momordica charantia OX=3673 GN=LOC111015604 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.5e-08
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ VA+FIAELTP   S K +L  W + VD SSNEKG   G+LL  P G++FEYA+R
Sbjct: 202 LKGQAVADFIAELTPPPLSAKSDLP-WTIYVDGSSNEKGCGAGILLLAPGGERFEYALR 259

[Close]

BLAST of Moc01g16140 vs. ExPASy TrEMBL
Match: A0A6J1DNL8 (uncharacterized protein LOC111022883 OS=Momordica charantia OX=3673 GN=LOC111022883 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.8e-08
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQ VA+FIAELTP S S + +L  W + VD SSNE+G   G+LL  P G++FEYA+R
Sbjct: 75  LKGQAVADFIAELTPPSQSTESDLS-WTIYVDGSSNERGCGAGILLLAPGGERFEYALR 132

[Close]

BLAST of Moc01g16140 vs. ExPASy TrEMBL
Match: A0A6J1DBZ0 (uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019628 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.8e-08
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MKGQTVANFIAELTPFSSSGKDNLDRWILNVDRSSNEKGSRVGVLLQTPSGDQFEYAVR 60
           +KGQTVA+FI ELTP S S + +L  W + VD SSNE+G   G+LL  P G++FEYA+R
Sbjct: 75  LKGQTVADFIVELTPPSQSTESDLS-WTIYVDGSSNERGYGAGILLLAPGGERFEYALR 132

The following BLAST results are available for this feature:

BLAST of Moc01g16140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150100.1	5.4e-08	57.63	uncharacterized protein LOC111018362 [Momordica charantia]	[more]
XP_022158591.1	7.1e-08	55.93	uncharacterized protein LOC111025048 [Momordica charantia]	[more]
XP_022146375.1	9.2e-08	57.63	uncharacterized protein LOC111015604 [Momordica charantia]	[more]
XP_022151715.1	1.2e-07	55.93	uncharacterized protein LOC111019628 [Momordica charantia]	[more]
XP_022155870.1	1.2e-07	55.93	uncharacterized protein LOC111022883 [Momordica charantia]	[more]

BLAST of Moc01g16140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g16140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7J6	2.6e-08	57.63	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1	[more]
A0A6J1E1C7	3.4e-08	55.93	uncharacterized protein LOC111025048 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CX44	4.5e-08	57.63	uncharacterized protein LOC111015604 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1DNL8	5.8e-08	55.93	uncharacterized protein LOC111022883 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DBZ0	5.8e-08	55.93	uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Moc01g16140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g16140.1	Moc01g16140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016740	transferase activity