Moc01g16100 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g16100
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionZinc finger, CCHC-type
Locationchr1: 10390025 .. 10391606 (-)
RNA-Seq ExpressionMoc01g16100
SyntenyMoc01g16100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCCTTTAATCGCAACAAATTCAAGAAATTGGAAATGCCAATTTTCTCTAGTGAAGACCTCGATGCGTGGCTTTTCCGAGCCGATAGGTACTTTGATATTCACTAGCTTATGGACGAGGAAAAGGTGAATGTGGGTTTTTTACCGTGTTGAAACCAACAGAAATCTGGATCAATCAGCTAAAGTTAATAGTTTTGTTCAAAAAGGTATAAGATATAAATACCTCTTTTGCATGTAGCTTCAGTCTTCATCATTGTAAAAATTTCTTCAAGAACATAGTGAATAAATCATCTGCTCTTCTTTAGTGGACGTAGGCTTTAATTAAGCTGAACCACTTAATTCTTCTGTCTTCATTTTCTCTCATCCTCCATCACCATTCTATTCTCATCCTCCATCACCATTCTATTCTGCGAACAGAAAGATTAAGGTTAAAGAATTCTTCAATCTTTAACAAAGTGGTATCAGAGCTCACGGTTGGTTAGAAGATCTTTCGTCTAGAAGCAGAAACAAGAGAGATAACGGTTGCAAGATTTGAAATAGAGAAGTTCGATGGAAAAGGCGATTTCGAATTATGGAAAGCCAAAATCGAAGTTGTTCTTGGTCAACAGAAGGCGTCTAAAGCCATCCTTGATCCAGCGTAATTGCCCCAGTCGATGACTGCAAAAGAAAAAGAAAAAATGGAAGAGATTGCATATGGAACCATTATCTTGAATCTTAGTGACAGCATACTAAGACAGGTATTAGATCTCACCTCTGCATATGACATTTGGAATAAGCTTGATACTTTGTTCACTACCAGAGGCTTACAAAGATGTAAAAACAGCATTGAAGTATGAAAGAGTATCAGTAACAAATTATGCAATAATTTCAGCCGTAAAGACCAAAGAACTCGAACTTCAAGCTTCAAGCTTCAAGAAAAGAGAATGTGAGTGCTGAAGGACATTTTGCAAAAGGCAGAAATAAGAACAATTGGAAAGATACTAAATACCAAAGTGGGGAGAAAGGTAAACAAGAAATCAGATGCAGCTATTGCCACAAGAAGGGTCACCTGAAAAGAGATTGTTATTTTCTTAAAAAGAAGCAAAACTTGAAGAACAAGAAATCACAGCCTGCTGAAGCCTCTGTAGGAGAAAATGTTGTTACTTATTCGGATGTTTTGGCAGCAACAGATAATCGTGCTCATTCAAGTAATACTCGAGAAAATAATGATTGGTTGCTAGATTCTGGCTGTTCATACCATATGACACCATCAAGGACTTGGTGAAAGTTACCAAGAATGGGATGGTGGTTCTGTTTACATGGGTAACAATGACATCTGAAAGGTAATTGGTATTGGGTCAATATCATTAAAATAAAATATGGATCTTTGAAGCTCCTTCAGAACGTTAGGCATGTGCCAAACCTAAAAAGAAATCTAATATCTTTAGGAATGCTCGACTCTATAGGCTGTGAATACAGTGGACATGATGGTACACTTGAGGTAAGAAAAAATTCCAGAATTGTGTTGGTTGGAGAAAAAGTGAATGGGTTGTATGTGGTCAAAGATATTGATTCTCCTGGTGCTGCATTAATAACATAA

mRNA sequence

ATGGGGTCCTTTAATCGCAACAAATTCAAGAAATTGGAAATGCCAATTTTCTCTAGTGAAGACCTCGATGCGTGGCTTTTCCGAGCCGATAGACCAAAGAACTCGAACTTCAAGCTTCAAGCTTCAAGAAAAGAGAATGTGAGTGCTGAAGGACATTTTGCAAAAGGCAGAAATAAGAACAATTGGAAAGATACTAAATACCAAAGTGGGGAGAAAGGTAAACAAGAAATCAGATGCAGCTATTGCCACAAGAAGGGTCACCTGAAAAGAGATTGTTATTTTCTTAAAAAGAAGCAAAACTTGAAGAACAAGAAATCACAGCCTGCTGAAGCCTCTGTAGGAGAAAATGTTGTTACTTATTCGGATGTTTTGGCAGCAACAGATAATCGACTTGGTGAAAGTTACCAAGAATGGGATGGTGGTTCTGTTTACATGGGCTGTGAATACAGTGGACATGATGGTACACTTGAGGTAAGAAAAAATTCCAGAATTGTGTTGGTTGGAGAAAAAGTGAATGGGTTGTATGTGGTCAAAGATATTGATTCTCCTGGTGCTGCATTAATAACATAA

Coding sequence (CDS)

ATGGGGTCCTTTAATCGCAACAAATTCAAGAAATTGGAAATGCCAATTTTCTCTAGTGAAGACCTCGATGCGTGGCTTTTCCGAGCCGATAGACCAAAGAACTCGAACTTCAAGCTTCAAGCTTCAAGAAAAGAGAATGTGAGTGCTGAAGGACATTTTGCAAAAGGCAGAAATAAGAACAATTGGAAAGATACTAAATACCAAAGTGGGGAGAAAGGTAAACAAGAAATCAGATGCAGCTATTGCCACAAGAAGGGTCACCTGAAAAGAGATTGTTATTTTCTTAAAAAGAAGCAAAACTTGAAGAACAAGAAATCACAGCCTGCTGAAGCCTCTGTAGGAGAAAATGTTGTTACTTATTCGGATGTTTTGGCAGCAACAGATAATCGACTTGGTGAAAGTTACCAAGAATGGGATGGTGGTTCTGTTTACATGGGCTGTGAATACAGTGGACATGATGGTACACTTGAGGTAAGAAAAAATTCCAGAATTGTGTTGGTTGGAGAAAAAGTGAATGGGTTGTATGTGGTCAAAGATATTGATTCTCCTGGTGCTGCATTAATAACATAA

Protein sequence

MGSFNRNKFKKLEMPIFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASVGENVVTYSDVLAATDNRLGESYQEWDGGSVYMGCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAALIT
Homology
BLAST of Moc01g16100 vs. NCBI nr
Match: TYK02285.1 (putative gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0

Query: 33  KNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKG-HLKRD 92
           + +  ++ A +K+  S EG F+KGR+KN+WKD   +  +K K+    +   K+G  +  D
Sbjct: 147 ETTELEILAQKKDQNSGEGSFSKGRSKNDWKDDNNRKDKKVKEPKPEALVAKQGSFIFVD 206

Query: 93  CYFLKKKQNLKNKKSQPAEASVG---ENVVTYSDVLAATDNRLGESYQEWDGGSVYMGCE 152
              L   QN  N +S   E  +G    +V+ Y D L    + L  +   + G    +GCE
Sbjct: 207 A--LTTSQNTYNSESFD-EFKIGCRTRDVLPY-DTLQRHVHTLKRNLISF-GMLDSIGCE 266

Query: 153 YSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL 188
           Y G  G  EV+K+ R +LV  K NGLY++KDI    +AL
Sbjct: 267 YHGVGGKFEVKKDGRTILVRMKTNGLYLIKDIQKFHSAL 300

BLAST of Moc01g16100 vs. NCBI nr
Match: PON41343.1 (Zinc finger, CCHC-type [Parasponia andersonii])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 0

Query: 44  KENVSAEGHFAKGRN-KNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLK 103
           KE  + EG  A+GR+ K + K  + +S  K K  ++C +CHK+GH KRDC   KKK  + 
Sbjct: 100 KEENTGEGLMARGRSEKCDNKAPRNESRSKSKGRLKCFHCHKEGHFKRDCPDRKKK--VH 159

Query: 104 NKKSQPAEASVGENVVTYSDVLAATDNRLGESYQEW--DGGSVYMGCEYSGHDGTLEVRK 163
            K   P EASV  +    ++VL  TD    +S +EW  D G  +  C        LE   
Sbjct: 160 EKPKDPGEASVASDGYDSAEVLVVTDE---DSSKEWIMDSGCSFHMCPTKSWFENLEKTD 219

Query: 164 NSRIVLVGEK 171
              ++L   K
Sbjct: 220 GGSVLLGNNK 224

BLAST of Moc01g16100 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 38  KLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKK 97
           +LQ ++K+    EG F KG NK             G+       C +   +K+DCY LK+
Sbjct: 185 ELQMTKKDQPRGEGFFPKGNNKT-----------MGRANRTMEMCIRDS-MKKDCYALKR 244

Query: 98  KQNLKNKKSQPAEASVGENVVTYSDVLAATD 129
           K N +NK  +  EA+VGEN + YSD LAAT+
Sbjct: 245 KLNQQNKGGKQTEAAVGENSLVYSDALAATE 263

BLAST of Moc01g16100 vs. NCBI nr
Match: GFY85693.1 (hypothetical protein Acr_04g0004310 [Actinidia rufa])

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-04
Identity = 46/181 (25.41%), Postives = 76/181 (41.99%), Query Frame = 0

Query: 16  IFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQ 75
           +F+ E     +   D+ ++     + SR+          KG  K  W+     S  +G+ 
Sbjct: 181 LFNEEAQRKEMGSTDQSESQALVSEGSRERGRGQGSGHHKGTRKGRWR-----SQARGR- 240

Query: 76  EIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASV---GENVVTYSDVLAATDNRLG 135
            +RC YC ++GH+KRDC     K   +++ S  A  +V    + +    DV      +L 
Sbjct: 241 TVRCFYCDQEGHIKRDC----PKYKAQDQSSDTAATAVMADDDEIDHARDVYGWRTTQLA 300

Query: 136 ESYQEWDGGSVYM-----GCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL 189
           E   E   GS +      GC +    G L V K ++ +L G K  GLY ++     G A 
Sbjct: 301 ELLAEGQSGSAWQTGDAKGCRFDASGGILRVSKGNKQMLWGRKTGGLYRLEGSVQTGGAT 351

BLAST of Moc01g16100 vs. ExPASy TrEMBL
Match: A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0

Query: 33  KNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKG-HLKRD 92
           + +  ++ A +K+  S EG F+KGR+KN+WKD   +  +K K+    +   K+G  +  D
Sbjct: 147 ETTELEILAQKKDQNSGEGSFSKGRSKNDWKDDNNRKDKKVKEPKPEALVAKQGSFIFVD 206

Query: 93  CYFLKKKQNLKNKKSQPAEASVG---ENVVTYSDVLAATDNRLGESYQEWDGGSVYMGCE 152
              L   QN  N +S   E  +G    +V+ Y D L    + L  +   + G    +GCE
Sbjct: 207 A--LTTSQNTYNSESFD-EFKIGCRTRDVLPY-DTLQRHVHTLKRNLISF-GMLDSIGCE 266

Query: 153 YSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL 188
           Y G  G  EV+K+ R +LV  K NGLY++KDI    +AL
Sbjct: 267 YHGVGGKFEVKKDGRTILVRMKTNGLYLIKDIQKFHSAL 300

BLAST of Moc01g16100 vs. ExPASy TrEMBL
Match: A0A2P5AXR9 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290120 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.0e-06
Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 0

Query: 44  KENVSAEGHFAKGRN-KNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLK 103
           KE  + EG  A+GR+ K + K  + +S  K K  ++C +CHK+GH KRDC   KKK  + 
Sbjct: 100 KEENTGEGLMARGRSEKCDNKAPRNESRSKSKGRLKCFHCHKEGHFKRDCPDRKKK--VH 159

Query: 104 NKKSQPAEASVGENVVTYSDVLAATDNRLGESYQEW--DGGSVYMGCEYSGHDGTLEVRK 163
            K   P EASV  +    ++VL  TD    +S +EW  D G  +  C        LE   
Sbjct: 160 EKPKDPGEASVASDGYDSAEVLVVTDE---DSSKEWIMDSGCSFHMCPTKSWFENLEKTD 219

Query: 164 NSRIVLVGEK 171
              ++L   K
Sbjct: 220 GGSVLLGNNK 224

BLAST of Moc01g16100 vs. ExPASy TrEMBL
Match: A0A7J0EGT7 (CCHC-type domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_04g0004310 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-04
Identity = 46/181 (25.41%), Postives = 76/181 (41.99%), Query Frame = 0

Query: 16  IFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQ 75
           +F+ E     +   D+ ++     + SR+          KG  K  W+     S  +G+ 
Sbjct: 181 LFNEEAQRKEMGSTDQSESQALVSEGSRERGRGQGSGHHKGTRKGRWR-----SQARGR- 240

Query: 76  EIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASV---GENVVTYSDVLAATDNRLG 135
            +RC YC ++GH+KRDC     K   +++ S  A  +V    + +    DV      +L 
Sbjct: 241 TVRCFYCDQEGHIKRDC----PKYKAQDQSSDTAATAVMADDDEIDHARDVYGWRTTQLA 300

Query: 136 ESYQEWDGGSVYM-----GCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL 189
           E   E   GS +      GC +    G L V K ++ +L G K  GLY ++     G A 
Sbjct: 301 ELLAEGQSGSAWQTGDAKGCRFDASGGILRVSKGNKQMLWGRKTGGLYRLEGSVQTGGAT 351

BLAST of Moc01g16100 vs. ExPASy TrEMBL
Match: A0A5D3BU40 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00880 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.4e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0

Query: 2   GSFNRNKFKKLEMPIFSSEDLDAWLFRADR 32
           GS +RNKFKK+EMP+F+ ED D+WLFRADR
Sbjct: 98  GSHDRNKFKKIEMPVFTGEDSDSWLFRADR 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK02285.13.7e-0633.96putative gag protein [Cucumis melo var. makuwa][more]
PON41343.11.8e-0534.62Zinc finger, CCHC-type [Parasponia andersonii][more]
XP_038885928.14.6e-0438.46uncharacterized protein LOC120076236 [Benincasa hispida][more]
GFY85693.16.0e-0425.41hypothetical protein Acr_04g0004310 [Actinidia rufa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BSZ61.8e-0633.96Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G... [more]
A0A2P5AXR99.0e-0634.62Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290120 PE=... [more]
A0A7J0EGT72.9e-0425.41CCHC-type domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_04g000431... [more]
A0A5D3BU406.4e-0473.33Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 78..92
score: 8.746164
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 63..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g16100.1Moc01g16100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding