MS028362 (gene) Bitter gourd (TR) v1

Overview


Name	MS028362
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SET domain-containing protein
Location	scaffold720: 209418 .. 211158 (-)
RNA-Seq Expression	MS028362
Synteny	MS028362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGTCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCTATCAGGAGAGAGATGGTTGAACCCTTCTACGACAATAAAGACGCTGCCAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCACCTAAGCTTCCTGTGCGTCCCTCTCCTTTCACCTCCGATGCCTCTACCACCGACGTTGCGCCAGCATCTACTTCCACCACTTCCCACGCTCCTATGGCTATGGGTACCCCCTTAATTCCGTCTATTACCCGCACAACTTTTTTTTTTCCTCTCCATTCTTCATTATTTAGGTTATGACTTTCATTGTAGTGTTTCTTATGTTATGGAAATTTTACTCAACCCATGCCAAATCTTTTCTTTTTCGTTTTTTTTGGATGAAACTTGTATATATCAACAAAAAGGCGAAAACAACCTAAGGGTTGGGGGTAACCCCCTCCCGGAAAAGGCTACCGAAATGCTTTTACTCCGTGCTTATTACTTTGTGTAGTTATAAGAAAGAGAGAGCGAGAGAGCTGCCCTCTGAATAAATCTCATGCTATTCACAATCTTCACGTTGTTACCTGATATGTTGAGGCTTCATGTCGATCAATTCTTCATGAATTAATCCCTACATTCTTAGCGCCCAGATGTCCAATTTTTGTTTTGCACAACTTTATCCAAGAGAGAAATTAGGTGATGGAGGAATGTTGCCCAACTTCAGTATGTATTAATTATGTTCCCTTTTCCATGAAGATGAAGATCAAACTATTTTGGTGAAATTTCGTTTATGGAGTCTAAACTTGCTTTTTTTTTTTTTAAACTCAACTCTAAGGTAGATGAATGCATTTTTTTCAATCTTCTTATATAAGCCGTATTTGTTGTTCAATTTTTATTTAAGCGTTAGCTTACTTCTTTCTCGTAATTATTCTTTACCCGTTAATTTTTTCGCCATGAGTTTAACTGTTTAAGTGACAGATGAGTAGAAATCAGGATCATATTTTTAAACTTTTCCAGTTAGAAATATCCAAGTTTGTCAGTGACTTATTTTTATTGGAGAGTTCTATATGTTTTTCCTATCCCTACTATTAAATGTAACTAGAGATCGCCTATGACCTATGAATAATACTCCCTCGTTTTTAAAGCCTTTTACTTTCTGATTATGATCCTACTGTTTGTTAACTTATGAAAAAGAAACTTATGCTAAACCTATTGCTAGGTATTTTATCGTGCTTTATTGTGTGTGAGATGTGAGATTGGGCTTTGATTTTAAAATTTTAGAAGAGGTACTTTGCTGTCAATCATGTTACCAAGCTCTACATTAACTCTCCAATGGGTTTTTTGAGTTGGAATCTGCCACAGGTCTTTTCAACTCCAATACTGACTACTGCAGAAAACAGTAAAATAATAAACCTTGAATGAGTTGAAACTATTAGTTTGAACTACCAAATAGTCATTTTCTGGAAAAAGGAACGTAATGACTTTTGTTTGCATGAATTTCAACCAATAATGGAATTATAGTATCAACCAAAGTGCAATACAACTGTTCTCTTTTCTGGTGGTGCTGCAGATGGATTTATGGAACCAGGCCCTCATTTCTTTGTAATTGTCTGTTACAGATGTGGAGTTGGATGATCCCAGTCAAAGCATGAAGCTGAAGCCTGTTGGTGGAATTGGAAAGAAATCCGGAAGAAAATTCAAGGTTGGTAAGGCCAAGCGCCGGGGTAAGTGCAGGATCAAGAGGAACCGCCACATTTAA

mRNA sequence

ATGGCGAAGTCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCTATCAGGAGAGAGATGGTTGAACCCTTCTACGACAATAAAGACGCTGCCAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCACCTAAGCTTCCTGTGCGTCCCTCTCCTTTCACCTCCGATGCCTCTACCACCGACGTTGCGCCAGCATCTACTTCCACCACTTCCCACGCTCCTATGGCTATGGATGTGGAGTTGGATGATCCCAGTCAAAGCATGAAGCTGAAGCCTGTTGGTGGAATTGGAAAGAAATCCGGAAGAAAATTCAAGGTTGGTAAGGCCAAGCGCCGGGGTAAGTGCAGGATCAAGAGGAACCGCCACATTTAA

Coding sequence (CDS)

ATGGCGAAGTCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCTATCAGGAGAGAGATGGTTGAACCCTTCTACGACAATAAAGACGCTGCCAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCACCTAAGCTTCCTGTGCGTCCCTCTCCTTTCACCTCCGATGCCTCTACCACCGACGTTGCGCCAGCATCTACTTCCACCACTTCCCACGCTCCTATGGCTATGGATGTGGAGTTGGATGATCCCAGTCAAAGCATGAAGCTGAAGCCTGTTGGTGGAATTGGAAAGAAATCCGGAAGAAAATTCAAGGTTGGTAAGGCCAAGCGCCGGGGTAAGTGCAGGATCAAGAGGAACCGCCACATTTAA

Protein sequence

MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTDVAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNRHI

Homology

[Close]

BLAST of MS028362 vs. NCBI nr
Match: XP_022146541.1 (uncharacterized protein LOC111015735 [Momordica charantia])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VAPASTSTTSHAPMAMDVELDDPSQSMK+KPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR
Sbjct: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKMKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 122

[Close]

BLAST of MS028362 vs. NCBI nr
Match: XP_038877484.1 (uncharacterized protein LOC120069761 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 102/122 (83.61%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD KDAAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKDAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTST   A  AMDVE+DD S+S  LKPVGGIGKKS RKFKVGKAKRRGKC+IKRNR
Sbjct: 61  VAQASTST--DADTAMDVEMDDCSRSNTLKPVGGIGKKSKRKFKVGKAKRRGKCKIKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

[Close]

BLAST of MS028362 vs. NCBI nr
Match: XP_008439430.1 (PREDICTED: uncharacterized protein LOC103484241 [Cucumis melo] >KAA0052419.1 uncharacterized protein E6C27_scaffold120G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTS+   A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VALASTSSAPDA--AMDVDMDDCSRSNTLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

[Close]

BLAST of MS028362 vs. NCBI nr
Match: XP_022926965.1 (uncharacterized protein LOC111433923 [Cucurbita moschata] >XP_023003712.1 uncharacterized protein LOC111497220 [Cucurbita maxima] >XP_023517951.1 uncharacterized protein LOC111781531 [Cucurbita pepo subsp. pepo] >KAG7026380.1 hypothetical protein SDJN02_10379 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEP YD KDAAKLAAQQAALAAPKLPVRPSPFT + ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQS-MKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRN 120
           VAPASTST + A  AM+VE+DD S+S M LK VGGIGKKS +KFKVGKAKRRGKC+IKRN
Sbjct: 61  VAPASTSTAADA--AMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRN 120

Query: 121 RHI 123
           RHI
Sbjct: 121 RHI 120

[Close]

BLAST of MS028362 vs. NCBI nr
Match: XP_004134518.1 (uncharacterized protein LOC101221511 [Cucumis sativus] >KGN49538.1 hypothetical protein Csa_002864 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 96/122 (78.69%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SP TS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPLTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VAP STS+ + A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VAPPSTSSAADA--AMDVDVDDCSRSDVLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

[Close]

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A6J1CZN9 (uncharacterized protein LOC111015735 OS=Momordica charantia OX=3673 GN=LOC111015735 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.2e-55
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VAPASTSTTSHAPMAMDVELDDPSQSMK+KPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR
Sbjct: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKMKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 122

[Close]

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A5A7UG11 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00140 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTS+   A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VALASTSSAPDA--AMDVDMDDCSRSNTLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

[Close]

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A1S3AZE5 (uncharacterized protein LOC103484241 OS=Cucumis melo OX=3656 GN=LOC103484241 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTS+   A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VALASTSSAPDA--AMDVDMDDCSRSNTLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

[Close]

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A6J1KND1 (uncharacterized protein LOC111497220 OS=Cucurbita maxima OX=3661 GN=LOC111497220 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEP YD KDAAKLAAQQAALAAPKLPVRPSPFT + ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQS-MKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRN 120
           VAPASTST + A  AM+VE+DD S+S M LK VGGIGKKS +KFKVGKAKRRGKC+IKRN
Sbjct: 61  VAPASTSTAADA--AMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRN 120

Query: 121 RHI 123
           RHI
Sbjct: 121 RHI 120

[Close]

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A6J1EMJ6 (uncharacterized protein LOC111433923 OS=Cucurbita moschata OX=3662 GN=LOC111433923 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEP YD KDAAKLAAQQAALAAPKLPVRPSPFT + ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQS-MKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRN 120
           VAPASTST + A  AM+VE+DD S+S M LK VGGIGKKS +KFKVGKAKRRGKC+IKRN
Sbjct: 61  VAPASTSTAADA--AMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRN 120

Query: 121 RHI 123
           RHI
Sbjct: 121 RHI 120

[Close]

BLAST of MS028362 vs. TAIR 10
Match: AT1G30880.1 (unknown protein; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMV--EPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDAST 60
           MAKSMR KR KRLRAIRRE+V  E F   ++ AK AA +AALAAPKLPVR +P +     
Sbjct: 1   MAKSMRCKRVKRLRAIRREIVEKESFTLTREDAKSAAIEAALAAPKLPVRQAPVSPFMEV 60

Query: 61  TDVAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGK--CRI 120
              +  S S ++      D E+DD  ++  LKP   IGKK  +KFK+G   RR K   R 
Sbjct: 61  ATPSSESASASTTIANDSDEEMDDEKKNKSLKP---IGKKLKKKFKLGMKNRRSKGVLRG 120

The following BLAST results are available for this feature:

BLAST of MS028362 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146541.1	1.1e-54	99.18	uncharacterized protein LOC111015735 [Momordica charantia]	[more]
XP_038877484.1	3.3e-40	83.61	uncharacterized protein LOC120069761 [Benincasa hispida]	[more]
XP_008439430.1	1.8e-38	79.51	PREDICTED: uncharacterized protein LOC103484241 [Cucumis melo] >KAA0052419.1 unc...	[more]
XP_022926965.1	2.4e-38	82.93	uncharacterized protein LOC111433923 [Cucurbita moschata] >XP_023003712.1 unchar...	[more]
XP_004134518.1	3.1e-38	78.69	uncharacterized protein LOC101221511 [Cucumis sativus] >KGN49538.1 hypothetical ...	[more]

BLAST of MS028362 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZN9	5.2e-55	99.18	uncharacterized protein LOC111015735 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5A7UG11	8.8e-39	79.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3AZE5	8.8e-39	79.51	uncharacterized protein LOC103484241 OS=Cucumis melo OX=3656 GN=LOC103484241 PE=...	[more]
A0A6J1KND1	1.2e-38	82.93	uncharacterized protein LOC111497220 OS=Cucurbita maxima OX=3661 GN=LOC111497220...	[more]
A0A6J1EMJ6	1.2e-38	82.93	uncharacterized protein LOC111433923 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]

BLAST of MS028362 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30880.1	1.7e-13	48.78	unknown protein; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	PANTHER	PTHR36320	OS04G0611300 PROTEIN	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028362.1	MS028362.1	mRNA