MS028362 (gene) Bitter gourd (TR) v1

Overview
NameMS028362
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSET domain-containing protein
Locationscaffold720: 209418 .. 211158 (-)
RNA-Seq ExpressionMS028362
SyntenyMS028362
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGTCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCTATCAGGAGAGAGATGGTTGAACCCTTCTACGACAATAAAGACGCTGCCAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCACCTAAGCTTCCTGTGCGTCCCTCTCCTTTCACCTCCGATGCCTCTACCACCGACGTTGCGCCAGCATCTACTTCCACCACTTCCCACGCTCCTATGGCTATGGGTACCCCCTTAATTCCGTCTATTACCCGCACAACTTTTTTTTTTCCTCTCCATTCTTCATTATTTAGGTTATGACTTTCATTGTAGTGTTTCTTATGTTATGGAAATTTTACTCAACCCATGCCAAATCTTTTCTTTTTCGTTTTTTTTGGATGAAACTTGTATATATCAACAAAAAGGCGAAAACAACCTAAGGGTTGGGGGTAACCCCCTCCCGGAAAAGGCTACCGAAATGCTTTTACTCCGTGCTTATTACTTTGTGTAGTTATAAGAAAGAGAGAGCGAGAGAGCTGCCCTCTGAATAAATCTCATGCTATTCACAATCTTCACGTTGTTACCTGATATGTTGAGGCTTCATGTCGATCAATTCTTCATGAATTAATCCCTACATTCTTAGCGCCCAGATGTCCAATTTTTGTTTTGCACAACTTTATCCAAGAGAGAAATTAGGTGATGGAGGAATGTTGCCCAACTTCAGTATGTATTAATTATGTTCCCTTTTCCATGAAGATGAAGATCAAACTATTTTGGTGAAATTTCGTTTATGGAGTCTAAACTTGCTTTTTTTTTTTTTAAACTCAACTCTAAGGTAGATGAATGCATTTTTTTCAATCTTCTTATATAAGCCGTATTTGTTGTTCAATTTTTATTTAAGCGTTAGCTTACTTCTTTCTCGTAATTATTCTTTACCCGTTAATTTTTTCGCCATGAGTTTAACTGTTTAAGTGACAGATGAGTAGAAATCAGGATCATATTTTTAAACTTTTCCAGTTAGAAATATCCAAGTTTGTCAGTGACTTATTTTTATTGGAGAGTTCTATATGTTTTTCCTATCCCTACTATTAAATGTAACTAGAGATCGCCTATGACCTATGAATAATACTCCCTCGTTTTTAAAGCCTTTTACTTTCTGATTATGATCCTACTGTTTGTTAACTTATGAAAAAGAAACTTATGCTAAACCTATTGCTAGGTATTTTATCGTGCTTTATTGTGTGTGAGATGTGAGATTGGGCTTTGATTTTAAAATTTTAGAAGAGGTACTTTGCTGTCAATCATGTTACCAAGCTCTACATTAACTCTCCAATGGGTTTTTTGAGTTGGAATCTGCCACAGGTCTTTTCAACTCCAATACTGACTACTGCAGAAAACAGTAAAATAATAAACCTTGAATGAGTTGAAACTATTAGTTTGAACTACCAAATAGTCATTTTCTGGAAAAAGGAACGTAATGACTTTTGTTTGCATGAATTTCAACCAATAATGGAATTATAGTATCAACCAAAGTGCAATACAACTGTTCTCTTTTCTGGTGGTGCTGCAGATGGATTTATGGAACCAGGCCCTCATTTCTTTGTAATTGTCTGTTACAGATGTGGAGTTGGATGATCCCAGTCAAAGCATGAAGCTGAAGCCTGTTGGTGGAATTGGAAAGAAATCCGGAAGAAAATTCAAGGTTGGTAAGGCCAAGCGCCGGGGTAAGTGCAGGATCAAGAGGAACCGCCACATTTAA

mRNA sequence

ATGGCGAAGTCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCTATCAGGAGAGAGATGGTTGAACCCTTCTACGACAATAAAGACGCTGCCAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCACCTAAGCTTCCTGTGCGTCCCTCTCCTTTCACCTCCGATGCCTCTACCACCGACGTTGCGCCAGCATCTACTTCCACCACTTCCCACGCTCCTATGGCTATGGATGTGGAGTTGGATGATCCCAGTCAAAGCATGAAGCTGAAGCCTGTTGGTGGAATTGGAAAGAAATCCGGAAGAAAATTCAAGGTTGGTAAGGCCAAGCGCCGGGGTAAGTGCAGGATCAAGAGGAACCGCCACATTTAA

Coding sequence (CDS)

ATGGCGAAGTCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCTATCAGGAGAGAGATGGTTGAACCCTTCTACGACAATAAAGACGCTGCCAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCACCTAAGCTTCCTGTGCGTCCCTCTCCTTTCACCTCCGATGCCTCTACCACCGACGTTGCGCCAGCATCTACTTCCACCACTTCCCACGCTCCTATGGCTATGGATGTGGAGTTGGATGATCCCAGTCAAAGCATGAAGCTGAAGCCTGTTGGTGGAATTGGAAAGAAATCCGGAAGAAAATTCAAGGTTGGTAAGGCCAAGCGCCGGGGTAAGTGCAGGATCAAGAGGAACCGCCACATTTAA

Protein sequence

MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTDVAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNRHI
Homology
BLAST of MS028362 vs. NCBI nr
Match: XP_022146541.1 (uncharacterized protein LOC111015735 [Momordica charantia])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VAPASTSTTSHAPMAMDVELDDPSQSMK+KPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR
Sbjct: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKMKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 122

BLAST of MS028362 vs. NCBI nr
Match: XP_038877484.1 (uncharacterized protein LOC120069761 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 102/122 (83.61%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD KDAAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKDAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTST   A  AMDVE+DD S+S  LKPVGGIGKKS RKFKVGKAKRRGKC+IKRNR
Sbjct: 61  VAQASTST--DADTAMDVEMDDCSRSNTLKPVGGIGKKSKRKFKVGKAKRRGKCKIKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

BLAST of MS028362 vs. NCBI nr
Match: XP_008439430.1 (PREDICTED: uncharacterized protein LOC103484241 [Cucumis melo] >KAA0052419.1 uncharacterized protein E6C27_scaffold120G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTS+   A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VALASTSSAPDA--AMDVDMDDCSRSNTLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

BLAST of MS028362 vs. NCBI nr
Match: XP_022926965.1 (uncharacterized protein LOC111433923 [Cucurbita moschata] >XP_023003712.1 uncharacterized protein LOC111497220 [Cucurbita maxima] >XP_023517951.1 uncharacterized protein LOC111781531 [Cucurbita pepo subsp. pepo] >KAG7026380.1 hypothetical protein SDJN02_10379 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEP YD KDAAKLAAQQAALAAPKLPVRPSPFT + ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQS-MKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRN 120
           VAPASTST + A  AM+VE+DD S+S M LK VGGIGKKS +KFKVGKAKRRGKC+IKRN
Sbjct: 61  VAPASTSTAADA--AMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRN 120

Query: 121 RHI 123
           RHI
Sbjct: 121 RHI 120

BLAST of MS028362 vs. NCBI nr
Match: XP_004134518.1 (uncharacterized protein LOC101221511 [Cucumis sativus] >KGN49538.1 hypothetical protein Csa_002864 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 96/122 (78.69%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SP TS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPLTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VAP STS+ + A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VAPPSTSSAADA--AMDVDVDDCSRSDVLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A6J1CZN9 (uncharacterized protein LOC111015735 OS=Momordica charantia OX=3673 GN=LOC111015735 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.2e-55
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VAPASTSTTSHAPMAMDVELDDPSQSMK+KPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR
Sbjct: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKMKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 122

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A5A7UG11 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00140 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTS+   A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VALASTSSAPDA--AMDVDMDDCSRSNTLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A1S3AZE5 (uncharacterized protein LOC103484241 OS=Cucumis melo OX=3656 GN=LOC103484241 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMV+PFYD K+AAKLAAQ+AALAAPKLPVR SPFTS+ ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRNR 120
           VA ASTS+   A  AMDV++DD S+S  LKPVGG+GKKS RKFKVGKAKRRGKC++KRNR
Sbjct: 61  VALASTSSAPDA--AMDVDMDDCSRSNTLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNR 120

Query: 121 HI 123
           HI
Sbjct: 121 HI 120

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A6J1KND1 (uncharacterized protein LOC111497220 OS=Cucurbita maxima OX=3661 GN=LOC111497220 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEP YD KDAAKLAAQQAALAAPKLPVRPSPFT + ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQS-MKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRN 120
           VAPASTST + A  AM+VE+DD S+S M LK VGGIGKKS +KFKVGKAKRRGKC+IKRN
Sbjct: 61  VAPASTSTAADA--AMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRN 120

Query: 121 RHI 123
           RHI
Sbjct: 121 RHI 120

BLAST of MS028362 vs. ExPASy TrEMBL
Match: A0A6J1EMJ6 (uncharacterized protein LOC111433923 OS=Cucurbita moschata OX=3662 GN=LOC111433923 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMVEPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDASTTD 60
           MAKSMRSKREKRLRAIRREMVEP YD KDAAKLAAQQAALAAPKLPVRPSPFT + ST D
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60

Query: 61  VAPASTSTTSHAPMAMDVELDDPSQS-MKLKPVGGIGKKSGRKFKVGKAKRRGKCRIKRN 120
           VAPASTST + A  AM+VE+DD S+S M LK VGGIGKKS +KFKVGKAKRRGKC+IKRN
Sbjct: 61  VAPASTSTAADA--AMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRN 120

Query: 121 RHI 123
           RHI
Sbjct: 121 RHI 120

BLAST of MS028362 vs. TAIR 10
Match: AT1G30880.1 (unknown protein; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 0

Query: 1   MAKSMRSKREKRLRAIRREMV--EPFYDNKDAAKLAAQQAALAAPKLPVRPSPFTSDAST 60
           MAKSMR KR KRLRAIRRE+V  E F   ++ AK AA +AALAAPKLPVR +P +     
Sbjct: 1   MAKSMRCKRVKRLRAIRREIVEKESFTLTREDAKSAAIEAALAAPKLPVRQAPVSPFMEV 60

Query: 61  TDVAPASTSTTSHAPMAMDVELDDPSQSMKLKPVGGIGKKSGRKFKVGKAKRRGK--CRI 120
              +  S S ++      D E+DD  ++  LKP   IGKK  +KFK+G   RR K   R 
Sbjct: 61  ATPSSESASASTTIANDSDEEMDDEKKNKSLKP---IGKKLKKKFKLGMKNRRSKGVLRG 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022146541.11.1e-5499.18uncharacterized protein LOC111015735 [Momordica charantia][more]
XP_038877484.13.3e-4083.61uncharacterized protein LOC120069761 [Benincasa hispida][more]
XP_008439430.11.8e-3879.51PREDICTED: uncharacterized protein LOC103484241 [Cucumis melo] >KAA0052419.1 unc... [more]
XP_022926965.12.4e-3882.93uncharacterized protein LOC111433923 [Cucurbita moschata] >XP_023003712.1 unchar... [more]
XP_004134518.13.1e-3878.69uncharacterized protein LOC101221511 [Cucumis sativus] >KGN49538.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CZN95.2e-5599.18uncharacterized protein LOC111015735 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A5A7UG118.8e-3979.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3AZE58.8e-3979.51uncharacterized protein LOC103484241 OS=Cucumis melo OX=3656 GN=LOC103484241 PE=... [more]
A0A6J1KND11.2e-3882.93uncharacterized protein LOC111497220 OS=Cucurbita maxima OX=3661 GN=LOC111497220... [more]
A0A6J1EMJ61.2e-3882.93uncharacterized protein LOC111433923 OS=Cucurbita moschata OX=3662 GN=LOC1114339... [more]
Match NameE-valueIdentityDescription
AT1G30880.11.7e-1348.78unknown protein; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..73
NoneNo IPR availablePANTHERPTHR36320OS04G0611300 PROTEINcoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028362.1MS028362.1mRNA