MS026208 (gene) Bitter gourd (TR) v1

Overview
NameMS026208
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold708: 377257 .. 377635 (-)
RNA-Seq ExpressionMS026208
SyntenyMS026208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTGCTCCACCGCCCAACTCCGGCCTATCACTGTCAGTTGGAGGCGAAAACCGATGGGACGACAAGAACGAAGTCGAGGACGAAAAATGTGGCTTCTTAGTCGTAGCTCTCTGCCCCTGTCTCGTATGCTTCTCCCTAATCCTAATCGTAGTTTTCATCGTTCTCATCGTCAAATTCCACTTCCTTTGCCACACACCTCTCCATTCTCTGGTGTTCAAGAACAAATGCTGATCGAATTCGCCTCGATAGTTTTAATTTTTTGAATTTCATCATCTTTGAGTCTTGATTTACTTGCATGAATTAGGGGTTGGAGTTGAGAAGGGGGTCTTCTGATCTCGGTAGTAGTGATTTAGATCTAGATTTCGAGACATAA

mRNA sequence

ATGGCGGCTGCTCCACCGCCCAACTCCGGCCTATCACTGTCAGTTGGAGGCGAAAACCGATGGGACGACAAGAACGAAGTCGAGGACGAAAAATGTGGCTTCTTAGTCGTAGCTCTCTGCCCCTGTCTCGTATGCTTCTCCCTAATCCTAATCGTAGGGTTGGAGTTGAGAAGGGGGTCTTCTGATCTCGGTAGTAGTGATTTAGATCTAGATTTCGAGACATAA

Coding sequence (CDS)

ATGGCGGCTGCTCCACCGCCCAACTCCGGCCTATCACTGTCAGTTGGAGGCGAAAACCGATGGGACGACAAGAACGAAGTCGAGGACGAAAAATGTGGCTTCTTAGTCGTAGCTCTCTGCCCCTGTCTCGTATGCTTCTCCCTAATCCTAATCGTAGGGTTGGAGTTGAGAAGGGGGTCTTCTGATCTCGGTAGTAGTGATTTAGATCTAGATTTCGAGACATAA

Protein sequence

MAAAPPPNSGLSLSVGGENRWDDKNEVEDEKCGFLVVALCPCLVCFSLILIVGLELRRGSSDLGSSDLDLDFET
Homology
[Close]
BLAST of MS026208 vs. NCBI nr
Match: KAG6593237.1 (hypothetical protein SDJN03_12713, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 9.1e-09
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MAAAPPPNSGLSLSVGGENRWDDKNEVEDEKCGFLVVALC 41
          MAAAPPP S LSLS+G ENRWD  NEVE++KC FLVVALC
Sbjct: 39 MAAAPPPKSALSLSIGDENRWDATNEVEEDKCAFLVVALC 78

[Close]
BLAST of MS026208 vs. NCBI nr
Match: KAB1223456.1 (hypothetical protein CJ030_MR2G012453 [Morella rubra])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 1  MAAAPPPNSGLSLSVGGENRWDDKNEVEDEKCGFLVVALCPCLVCFSLILIV 53
          MA +PPP S  +LS+    R +DK+ V + KC FLVVALCPCLVCF L+LIV
Sbjct: 1  MANSPPPPS-YALSI----RDEDKDGVAEAKCDFLVVALCPCLVCFILLLIV 47

[Close]
BLAST of MS026208 vs. NCBI nr
Match: XP_028186596.1 (pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Glycine soja])

HSP 1 Score: 53.9 bits (128), Expect = 6.8e-04
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 2  AAAPPPNSGLSLSVGGENRWDDKNEVEDEKCGFLVVALCPCLVCFSLILI 52
          A++PPP+  LS+        DD  + E+ KC +LVVALCPCLVCF L+LI
Sbjct: 5  ASSPPPSFALSIR-------DDHRKDEESKCAYLVVALCPCLVCFVLLLI 47

[Close]
BLAST of MS026208 vs. ExPASy TrEMBL
Match: A0A6A1WGF8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G012453 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 1  MAAAPPPNSGLSLSVGGENRWDDKNEVEDEKCGFLVVALCPCLVCFSLILIV 53
          MA +PPP S  +LS+    R +DK+ V + KC FLVVALCPCLVCF L+LIV
Sbjct: 1  MANSPPPPS-YALSI----RDEDKDGVAEAKCDFLVVALCPCLVCFILLLIV 47

[Close]
BLAST of MS026208 vs. ExPASy TrEMBL
Match: A0A0S3SJ30 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G173000 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.3e-04
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 3  AAPPPNSGLSLSVGGENRWDDKNEVEDEKCGFLVVALCPCLVCFSLILI 52
          ++PPP+  LS+        DD  + E+ KC +LVVALCPCLVCF L+LI
Sbjct: 6  SSPPPSFALSIG-------DDYRKEEESKCAYLVVALCPCLVCFVLLLI 47

The following BLAST results are available for this feature:
BLAST of MS026208 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593237.19.1e-0977.50hypothetical protein SDJN03_12713, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB1223456.11.0e-0459.62hypothetical protein CJ030_MR2G012453 [Morella rubra][more]
XP_028186596.16.8e-0452.00pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Glyci... [more]
BLAST of MS026208 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS026208 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A1WGF85.1e-0559.62Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G012453 PE=4 SV=1[more]
A0A0S3SJ307.3e-0451.02Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G... [more]
BLAST of MS026208 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026208.1MS026208.1mRNA