Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAAGCTGTCACCAACAAATGGAGGAGTTTGTGATCGACACGTGTCCGGCAACGCTCCGAAAACAGCGGAGTGGTGAACCCGAGCAGCCGGTGCCTCCGAGTCCATTCGGCGTGCACGATGTGGCTGCATGCAGTAGCTGTGACAACACCGGCTCTATGAGCCCCGAATCCGTCGCCGAGTCTCCGACTAAGCTGCTGCGATCCTCGGCGCCGAATGTACAGGAGCAGTAG
mRNA sequence
ATGGTGAAAAGCTGTCACCAACAAATGGAGGAGTTTGTGATCGACACGTGTCCGGCAACGCTCCGAAAACAGCGGAGTGGTGAACCCGAGCAGCCGGTGCCTCCGAGTCCATTCGGCGTGCACGATGTGGCTGCATGCAGTAGCTGTGACAACACCGGCTCTATGAGCCCCGAATCCGTCGCCGAGTCTCCGACTAAGCTGCTGCGATCCTCGGCGCCGAATGTACAGGAGCAGTAG
Coding sequence (CDS)
ATGGTGAAAAGCTGTCACCAACAAATGGAGGAGTTTGTGATCGACACGTGTCCGGCAACGCTCCGAAAACAGCGGAGTGGTGAACCCGAGCAGCCGGTGCCTCCGAGTCCATTCGGCGTGCACGATGTGGCTGCATGCAGTAGCTGTGACAACACCGGCTCTATGAGCCCCGAATCCGTCGCCGAGTCTCCGACTAAGCTGCTGCGATCCTCGGCGCCGAATGTACAGGAGCAGTAG
Protein sequence
MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSCDNTGSMSPESVAESPTKLLRSSAPNVQEQ
Homology
BLAST of MS025082 vs. NCBI nr
Match:
XP_022149248.1 (cyclin-D2-1-like [Momordica charantia])
HSP 1 Score: 123.2 bits (308), Expect = 9.6e-25
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSCDNTGSMSPESV 60
MV+SCHQ MEE+VIDTCPA LRKQRSGE EQP PPSP GV D AAC SCDNTGS S E+
Sbjct: 209 MVRSCHQLMEEYVIDTCPAALRKQRSGEAEQPAPPSPVGVLDAAACGSCDNTGSTSHEAA 268
Query: 61 AESPTKLLRSSAPNVQEQ 79
AE PTK LRSSAP+VQEQ
Sbjct: 269 AEPPTKRLRSSAPDVQEQ 286
BLAST of MS025082 vs. NCBI nr
Match:
XP_038903710.1 (cyclin-D2-2-like [Benincasa hispida])
HSP 1 Score: 107.5 bits (267), Expect = 5.4e-20
Identity = 56/82 (68.29%), Postives = 62/82 (75.61%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
MV+SCHQ MEE+VIDTCPA LRKQR+G +QP PPSP GV D AAC SC DN GS S
Sbjct: 260 MVRSCHQLMEEYVIDTCPAELRKQRNGGADQPAPPSPVGVLDAAACGSCDTRLDNPGSTS 319
Query: 61 PESVAESPTKLLRSSAPNVQEQ 79
E+ E PTK LRSSAP+VQEQ
Sbjct: 320 HEAPVEPPTKRLRSSAPDVQEQ 341
BLAST of MS025082 vs. NCBI nr
Match:
XP_023524819.1 (cyclin-D4-1-like isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
MV+SCHQ MEE+VIDTCP LRKQR+ E EQP PPSP GV D AAC SC DN GS S
Sbjct: 210 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 269
Query: 61 PESV---AESPTKLLRSSAPNVQEQ 79
E AE TK LRSSAP+VQEQ
Sbjct: 270 HEPAAPSAEPQTKRLRSSAPDVQEQ 294
BLAST of MS025082 vs. NCBI nr
Match:
XP_022991967.1 (cyclin-D2-2-like [Cucurbita maxima])
HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
MV+SCHQ MEE+VIDTCP LRKQR+ E EQP PPSP GV D AAC SC DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298
Query: 61 PESV---AESPTKLLRSSAPNVQEQ 79
E AE TK LRSSAP+VQEQ
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323
BLAST of MS025082 vs. NCBI nr
Match:
XP_023524811.1 (cyclin-D2-2-like isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
MV+SCHQ MEE+VIDTCP LRKQR+ E EQP PPSP GV D AAC SC DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298
Query: 61 PESV---AESPTKLLRSSAPNVQEQ 79
E AE TK LRSSAP+VQEQ
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323
BLAST of MS025082 vs. ExPASy TrEMBL
Match:
A0A6J1D6B2 (B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111017715 PE=3 SV=1)
HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSCDNTGSMSPESV 60
MV+SCHQ MEE+VIDTCPA LRKQRSGE EQP PPSP GV D AAC SCDNTGS S E+
Sbjct: 209 MVRSCHQLMEEYVIDTCPAALRKQRSGEAEQPAPPSPVGVLDAAACGSCDNTGSTSHEAA 268
Query: 61 AESPTKLLRSSAPNVQEQ 79
AE PTK LRSSAP+VQEQ
Sbjct: 269 AEPPTKRLRSSAPDVQEQ 286
BLAST of MS025082 vs. ExPASy TrEMBL
Match:
A0A6J1JNE1 (B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488456 PE=3 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 9.4e-18
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
MV+SCHQ MEE+VIDTCP LRKQR+ E EQP PPSP GV D AAC SC DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298
Query: 61 PESV---AESPTKLLRSSAPNVQEQ 79
E AE TK LRSSAP+VQEQ
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323
BLAST of MS025082 vs. ExPASy TrEMBL
Match:
A0A6J1FQ05 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111447185 PE=3 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 53/83 (63.86%), Postives = 58/83 (69.88%), Query Frame = 0
Query: 1 MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
MV+SCHQ MEE+VIDTCP LRKQR+ E EQP PPSP GV D AAC SC DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTHLDNLGSTS 298
Query: 61 PESV---AESPTKLLRSSAPNVQ 77
E AE TK LRSSAP+V+
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVR 321
BLAST of MS025082 vs. ExPASy TrEMBL
Match:
A0A5D3E1I4 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00440 PE=3 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 8.8e-16
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 0
Query: 2 VKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMSP 61
VKSCHQ MEE+VIDTC A LRKQR EQP PPSP GV D AAC SC D+ GS S
Sbjct: 211 VKSCHQLMEEYVIDTCTAELRKQRRIGEEQPAPPSPVGVLDAAACGSCDTRLDHPGSTSH 270
Query: 62 ESVAE-SPTKLLRSSAPNVQEQ 79
E AE SP+K +RSSAP+VQ Q
Sbjct: 271 EPPAEPSPSKRIRSSAPDVQHQ 292
BLAST of MS025082 vs. ExPASy TrEMBL
Match:
A0A5A7TLD3 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00450 PE=3 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 8.8e-16
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 0
Query: 2 VKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMSP 61
VKSCHQ MEE+VIDTC A LRKQR EQP PPSP GV D AAC SC D+ GS S
Sbjct: 211 VKSCHQLMEEYVIDTCTAELRKQRRIGEEQPAPPSPVGVLDAAACGSCDTRLDHPGSTSH 270
Query: 62 ESVAE-SPTKLLRSSAPNVQEQ 79
E AE SP+K +RSSAP+VQ Q
Sbjct: 271 EPPAEPSPSKRIRSSAPDVQHQ 292
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1D6B2 | 4.6e-25 | 78.21 | B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111017715 PE=3 SV=1 | [more] |
A0A6J1JNE1 | 9.4e-18 | 65.88 | B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488456 PE=3 SV=1 | [more] |
A0A6J1FQ05 | 3.0e-16 | 63.86 | B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111447185 PE=3 SV=1 | [more] |
A0A5D3E1I4 | 8.8e-16 | 64.63 | B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00440 ... | [more] |
A0A5A7TLD3 | 8.8e-16 | 64.63 | B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00450 P... | [more] |
Match Name | E-value | Identity | Description | |