MS025082 (gene) Bitter gourd (TR) v1

Overview


Name	MS025082
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B-like cyclin
Location	scaffold404: 1003832 .. 1004068 (+)
RNA-Seq Expression	MS025082
Synteny	MS025082

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAAGCTGTCACCAACAAATGGAGGAGTTTGTGATCGACACGTGTCCGGCAACGCTCCGAAAACAGCGGAGTGGTGAACCCGAGCAGCCGGTGCCTCCGAGTCCATTCGGCGTGCACGATGTGGCTGCATGCAGTAGCTGTGACAACACCGGCTCTATGAGCCCCGAATCCGTCGCCGAGTCTCCGACTAAGCTGCTGCGATCCTCGGCGCCGAATGTACAGGAGCAGTAG

mRNA sequence

ATGGTGAAAAGCTGTCACCAACAAATGGAGGAGTTTGTGATCGACACGTGTCCGGCAACGCTCCGAAAACAGCGGAGTGGTGAACCCGAGCAGCCGGTGCCTCCGAGTCCATTCGGCGTGCACGATGTGGCTGCATGCAGTAGCTGTGACAACACCGGCTCTATGAGCCCCGAATCCGTCGCCGAGTCTCCGACTAAGCTGCTGCGATCCTCGGCGCCGAATGTACAGGAGCAGTAG

Coding sequence (CDS)

ATGGTGAAAAGCTGTCACCAACAAATGGAGGAGTTTGTGATCGACACGTGTCCGGCAACGCTCCGAAAACAGCGGAGTGGTGAACCCGAGCAGCCGGTGCCTCCGAGTCCATTCGGCGTGCACGATGTGGCTGCATGCAGTAGCTGTGACAACACCGGCTCTATGAGCCCCGAATCCGTCGCCGAGTCTCCGACTAAGCTGCTGCGATCCTCGGCGCCGAATGTACAGGAGCAGTAG

Protein sequence

MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSCDNTGSMSPESVAESPTKLLRSSAPNVQEQ

Homology

[Close]

BLAST of MS025082 vs. NCBI nr
Match: XP_022149248.1 (cyclin-D2-1-like [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 9.6e-25
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSCDNTGSMSPESV 60
           MV+SCHQ MEE+VIDTCPA LRKQRSGE EQP PPSP GV D AAC SCDNTGS S E+ 
Sbjct: 209 MVRSCHQLMEEYVIDTCPAALRKQRSGEAEQPAPPSPVGVLDAAACGSCDNTGSTSHEAA 268

Query: 61  AESPTKLLRSSAPNVQEQ 79
           AE PTK LRSSAP+VQEQ
Sbjct: 269 AEPPTKRLRSSAPDVQEQ 286

[Close]

BLAST of MS025082 vs. NCBI nr
Match: XP_038903710.1 (cyclin-D2-2-like [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 5.4e-20
Identity = 56/82 (68.29%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
           MV+SCHQ MEE+VIDTCPA LRKQR+G  +QP PPSP GV D AAC SC    DN GS S
Sbjct: 260 MVRSCHQLMEEYVIDTCPAELRKQRNGGADQPAPPSPVGVLDAAACGSCDTRLDNPGSTS 319

Query: 61  PESVAESPTKLLRSSAPNVQEQ 79
            E+  E PTK LRSSAP+VQEQ
Sbjct: 320 HEAPVEPPTKRLRSSAPDVQEQ 341

[Close]

BLAST of MS025082 vs. NCBI nr
Match: XP_023524819.1 (cyclin-D4-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
           MV+SCHQ MEE+VIDTCP  LRKQR+ E EQP PPSP GV D AAC SC    DN GS S
Sbjct: 210 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 269

Query: 61  PESV---AESPTKLLRSSAPNVQEQ 79
            E     AE  TK LRSSAP+VQEQ
Sbjct: 270 HEPAAPSAEPQTKRLRSSAPDVQEQ 294

[Close]

BLAST of MS025082 vs. NCBI nr
Match: XP_022991967.1 (cyclin-D2-2-like [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
           MV+SCHQ MEE+VIDTCP  LRKQR+ E EQP PPSP GV D AAC SC    DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298

Query: 61  PESV---AESPTKLLRSSAPNVQEQ 79
            E     AE  TK LRSSAP+VQEQ
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323

[Close]

BLAST of MS025082 vs. NCBI nr
Match: XP_023524811.1 (cyclin-D2-2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
           MV+SCHQ MEE+VIDTCP  LRKQR+ E EQP PPSP GV D AAC SC    DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298

Query: 61  PESV---AESPTKLLRSSAPNVQEQ 79
            E     AE  TK LRSSAP+VQEQ
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323

[Close]

BLAST of MS025082 vs. ExPASy TrEMBL
Match: A0A6J1D6B2 (B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111017715 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSCDNTGSMSPESV 60
           MV+SCHQ MEE+VIDTCPA LRKQRSGE EQP PPSP GV D AAC SCDNTGS S E+ 
Sbjct: 209 MVRSCHQLMEEYVIDTCPAALRKQRSGEAEQPAPPSPVGVLDAAACGSCDNTGSTSHEAA 268

Query: 61  AESPTKLLRSSAPNVQEQ 79
           AE PTK LRSSAP+VQEQ
Sbjct: 269 AEPPTKRLRSSAPDVQEQ 286

[Close]

BLAST of MS025082 vs. ExPASy TrEMBL
Match: A0A6J1JNE1 (B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488456 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.4e-18
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
           MV+SCHQ MEE+VIDTCP  LRKQR+ E EQP PPSP GV D AAC SC    DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298

Query: 61  PESV---AESPTKLLRSSAPNVQEQ 79
            E     AE  TK LRSSAP+VQEQ
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323

[Close]

BLAST of MS025082 vs. ExPASy TrEMBL
Match: A0A6J1FQ05 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111447185 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 53/83 (63.86%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 1   MVKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMS 60
           MV+SCHQ MEE+VIDTCP  LRKQR+ E EQP PPSP GV D AAC SC    DN GS S
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTHLDNLGSTS 298

Query: 61  PESV---AESPTKLLRSSAPNVQ 77
            E     AE  TK LRSSAP+V+
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVR 321

[Close]

BLAST of MS025082 vs. ExPASy TrEMBL
Match: A0A5D3E1I4 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00440 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.8e-16
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 2   VKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMSP 61
           VKSCHQ MEE+VIDTC A LRKQR    EQP PPSP GV D AAC SC    D+ GS S 
Sbjct: 211 VKSCHQLMEEYVIDTCTAELRKQRRIGEEQPAPPSPVGVLDAAACGSCDTRLDHPGSTSH 270

Query: 62  ESVAE-SPTKLLRSSAPNVQEQ 79
           E  AE SP+K +RSSAP+VQ Q
Sbjct: 271 EPPAEPSPSKRIRSSAPDVQHQ 292

[Close]

BLAST of MS025082 vs. ExPASy TrEMBL
Match: A0A5A7TLD3 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00450 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.8e-16
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 2   VKSCHQQMEEFVIDTCPATLRKQRSGEPEQPVPPSPFGVHDVAACSSC----DNTGSMSP 61
           VKSCHQ MEE+VIDTC A LRKQR    EQP PPSP GV D AAC SC    D+ GS S 
Sbjct: 211 VKSCHQLMEEYVIDTCTAELRKQRRIGEEQPAPPSPVGVLDAAACGSCDTRLDHPGSTSH 270

Query: 62  ESVAE-SPTKLLRSSAPNVQEQ 79
           E  AE SP+K +RSSAP+VQ Q
Sbjct: 271 EPPAEPSPSKRIRSSAPDVQHQ 292

The following BLAST results are available for this feature:

BLAST of MS025082 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149248.1	9.6e-25	78.21	cyclin-D2-1-like [Momordica charantia]	[more]
XP_038903710.1	5.4e-20	68.29	cyclin-D2-2-like [Benincasa hispida]	[more]
XP_023524819.1	1.9e-17	65.88	cyclin-D4-1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022991967.1	1.9e-17	65.88	cyclin-D2-2-like [Cucurbita maxima]	[more]
XP_023524811.1	1.9e-17	65.88	cyclin-D2-2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS025082 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6B2	4.6e-25	78.21	B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111017715 PE=3 SV=1	[more]
A0A6J1JNE1	9.4e-18	65.88	B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488456 PE=3 SV=1	[more]
A0A6J1FQ05	3.0e-16	63.86	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111447185 PE=3 SV=1	[more]
A0A5D3E1I4	8.8e-16	64.63	B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00440 ...	[more]
A0A5A7TLD3	8.8e-16	64.63	B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00450 P...	[more]

BLAST of MS025082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025082.1	MS025082.1	mRNA