Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGGATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAATATGGC
mRNA sequence
GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGGATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAATATGGC
Coding sequence (CDS)
GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGGATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAATATGGC
Protein sequence
VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
Homology
BLAST of MS022995 vs. NCBI nr
Match:
KAG5611947.1 (hypothetical protein H5410_023228 [Solanum commersonii])
HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRY 60
V+K + L R W K KGS+LVNWR V +P + GL NLK N LL KW+WRY
Sbjct: 396 VLKKLDRLRREFLWFGTKEGKGSYLVNWRIVQLPKSLGGLRLRNLKIQNECLLMKWLWRY 455
Query: 61 IMKKDALWRRVIVAKYG 76
+ + ALW+ VI KYG
Sbjct: 456 VKEDQALWKEVIQCKYG 472
BLAST of MS022995 vs. NCBI nr
Match:
KAG5568485.1 (hypothetical protein H5410_064493 [Solanum commersonii])
HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRY 60
V K + L R W K KGS+LVNWR V +P + GL NLK N LL KW+WRY
Sbjct: 9 VPKKLDRLRREFLWFGTKEGKGSYLVNWRIVQLPKSLGGLRLRNLKIQNECLLMKWLWRY 68
Query: 61 IMKKDALWRRVIVAKYG 76
+ + ALW+ VI KYG
Sbjct: 69 VKEDQALWKEVIQCKYG 85
BLAST of MS022995 vs. NCBI nr
Match:
KAG6723354.1 (hypothetical protein I3842_03G204200 [Carya illinoinensis])
HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRY 60
V+K I+ + R W E+ HLVNW+KV P+ GL NLK N++LL KW+WRY
Sbjct: 35 VVKIIERIFRNFLWDGIGEERKFHLVNWKKVCTPVTCGGLGVRNLKLFNKALLRKWLWRY 94
Query: 61 IMKKDALWRRVIVAKYG 76
+ ALW++++ AKYG
Sbjct: 95 SNENKALWKQIVDAKYG 111
BLAST of MS022995 vs. NCBI nr
Match:
KAG5608422.1 (hypothetical protein H5410_019703 [Solanum commersonii])
HSP 1 Score: 70.1 bits (170), Expect = 9.3e-09
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRY 60
V+K + L R WK K K +LVNW+ V + GL NL+ N SLL KW+WRY
Sbjct: 53 VVKKLDKLRRNFLWKGNKEGKDYNLVNWKNVLLSKERGGLGIRNLRLQNESLLMKWLWRY 112
Query: 61 IMKKDALWRRVIVAKYG 76
I + ALW+ VIVAKYG
Sbjct: 113 IEEDAALWKEVIVAKYG 129
BLAST of MS022995 vs. NCBI nr
Match:
KAG2682775.1 (hypothetical protein I3760_10G000200 [Carya illinoinensis] >KAG7958054.1 hypothetical protein I3843_10G000300 [Carya illinoinensis])
HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
V K I+ L R W + EK HLV W+KV PI GL NL NR+LLGKW+WRY
Sbjct: 67 VEKRIESLFRNFLWVGKGDEKKIHLVGWKKVCQPIDCGGLGIKNLSLFNRALLGKWLWRY 126
Query: 61 IMKKDALWRRVIVAKYG 76
++ +A W+ VI K+G
Sbjct: 127 HLESNAFWKNVIAIKFG 143
BLAST of MS022995 vs. ExPASy TrEMBL
Match:
A0A2N9HMA0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40621 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
V ++ L R W + HLVNW K+ PIP GL NL+ N+SLLGKW+WRY
Sbjct: 285 VAHRLEKLQRDFLWDGLGDQPKFHLVNWAKICEPIPSGGLGIKNLQSFNQSLLGKWLWRY 344
Query: 61 IMKKDALWRRVIVAKYG 76
M +++LWR+V+ AKYG
Sbjct: 345 GMDRESLWRQVVEAKYG 361
BLAST of MS022995 vs. ExPASy TrEMBL
Match:
A0A2N9EUL2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6131 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRY 60
V K I+ + R W + + HLVNW + P GLN NL++ N +LLGKW+WR+
Sbjct: 1005 VAKRIEKIQRNFLWGNSEEVINFHLVNWNHICTPYSNGGLNIRNLRRFNEALLGKWLWRF 1064
Query: 61 IMKKDALWRRVIVAKYG 76
++++ALWR+V+VAKYG
Sbjct: 1065 GVEREALWRQVVVAKYG 1081
BLAST of MS022995 vs. ExPASy TrEMBL
Match:
A0A2N9GCH1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28139 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 9.0e-10
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 0
Query: 6 KMLHRISQWKHEKMEKG----------------------SHLVNWRKV--PIPILGLNTS 65
KM HR++ WK + KG HLV+W K+ P+ GL
Sbjct: 785 KMEHRLAGWKRLYLSKGVANRLEKLQRDFLWSGLGSKFKYHLVSWPKICEPVSSGGLAIR 844
Query: 66 NLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG 76
NL++ N++LLGKW+WRY +++DALWRRV+ AKYG
Sbjct: 845 NLRRFNQALLGKWLWRYGLERDALWRRVVEAKYG 878
BLAST of MS022995 vs. ExPASy TrEMBL
Match:
A0A2N9FHL6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14565 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
V K I+ LHR W E+ HLV W +V PIP GL +L NR+LLGKW+WR+
Sbjct: 1130 VAKRIESLHRNFLWGGMGEEQKLHLVAWDRVCSPIPQGGLGVRHLISFNRALLGKWLWRF 1189
Query: 61 IMKKDALWRRVIVAKYG 76
+++ LWRRV+VA+YG
Sbjct: 1190 GLEESHLWRRVVVARYG 1206
BLAST of MS022995 vs. ExPASy TrEMBL
Match:
A0A2N9FKU6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15695 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 1 VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
V K I+ LHR W E+ HLV W +V PIP GL +L NR+LLGKW+WR+
Sbjct: 822 VAKRIESLHRNFLWGGMGEEQKLHLVAWDRVCSPIPQGGLGVRHLISFNRALLGKWLWRF 881
Query: 61 IMKKDALWRRVIVAKYG 76
+++ LWRRV+VA+YG
Sbjct: 882 GLEESHLWRRVVVARYG 898
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG5611947.1 | 1.4e-09 | 48.05 | hypothetical protein H5410_023228 [Solanum commersonii] | [more] |
KAG5568485.1 | 5.4e-09 | 48.05 | hypothetical protein H5410_064493 [Solanum commersonii] | [more] |
KAG6723354.1 | 5.4e-09 | 44.16 | hypothetical protein I3842_03G204200 [Carya illinoinensis] | [more] |
KAG5608422.1 | 9.3e-09 | 48.05 | hypothetical protein H5410_019703 [Solanum commersonii] | [more] |
KAG2682775.1 | 1.2e-08 | 46.75 | hypothetical protein I3760_10G000200 [Carya illinoinensis] >KAG7958054.1 hypothe... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9HMA0 | 6.9e-10 | 46.75 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40621 PE=4 SV=1 | [more] |
A0A2N9EUL2 | 6.9e-10 | 44.16 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9GCH1 | 9.0e-10 | 40.43 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9FHL6 | 1.2e-09 | 48.05 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9FKU6 | 1.2e-09 | 48.05 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
Match Name | E-value | Identity | Description | |