MS022176 (gene) Bitter gourd (TR) v1

Overview


Name	MS022176
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-binding protein 39
Location	scaffold47: 1424396 .. 1435787 (-)
RNA-Seq Expression	MS022176
Synteny	MS022176

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAGGTGAAGGAAACTGCCAATGGCGGTGATGCAGAAATGAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAGTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCGAAGTCAGAGGACGAGTCACGTGATCATGATCGACATAGAGATAGGACGTCTTCGCAGCACAGGTCAAGGTCTAAAGATAGAGACCGTGATCGACGCAGGAGCAGTAAAGAATATAGGGAAAAAGAGGACAAAGAAAGGAATCGGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGATAGAGACCGAGACCGTGGTCATGATCGTGATAGAGAAAGTAGACGAGGTAGAGATGGTGAAAGGGATAGGGAGAGAGAACGGTCACGCCGAAGTAGAAGTCATTCGGAAAGACATCGCAGTGATCGGGATGAAAGCATAAGAGAGAGGAGCCGAGATAATGAATTCAAAGAAAGGGAAAAGGAGAGAGAGACAAGAGAGCGAGGCAGAGATGGCAGGTATTTTGTACATTTGTTTTCTTGTATCATGTTTTTTGGTATTCAGAAGAAGAGAGAGCCAAGATAGCTATTCACATTGCTCCGATAATAACCTGCATAATATTTATAACTCTAACACAGACTATAATGATAAAACTCTTCCACTGAGTTATTTAAATTTGCATGTTATGTTGGTTGATTAATGTTGTGCTGCTTTGCTACACTTTATGATTTGGACTAGATTTGACTCATGATCATTCTAAATGATGGTTGATGACGTTTTTTCATTGTTAAGGAAAAAAAAAACTCTTTTATAAGTTGCATGATCAGGAAATGGTCAGTGTGTCTGAGTCATATTACTGTCTAATTGCTTCCAGGAATAAATAATCCTAACACTTGGCTTGTAAGGGTTGTTGGAAGTCTCTTTCCAATGATCCAATCTCTCCCACTATTCTCAACACATCATCCATTGCGAACATAAATTTTCACGAGATCCGAAACCAAAACCATATAATGAAGACCTCATTTTGAAAGGTGAATCATGATTTAGTAAGCTATGATATAGGCTATAGCCAATGGGAGAAGTTTGTCCTGAGAGTTCTTGATGTAGTTTGAATAAACTTGTGTATTTTCAATTGCGGCACATCATGGTATATGGAATTTTAAGGATATATTTGTCCCCTAATTCCTACTAGCTTATTTTGATTGTTAATCATTTCTTTTATAAGCGAACTTCAATTGGTTTTGGTATGAAATGTGGAAGCACATGTCCTTGATAAGGCTTTGTCCATTTATTTCCTGATTAAGTTTTATAATGTCGATAGATGGAAGTTTATCCAATCCACATAGTTTGCAAGTTTCTAAAGTTTTCTGGTTTTTCAGAATTTCTTGTACATTCATAATTCTTAGCTAAGCTTAGCAATTAGGAAACCTCAGATGTTGAAGAGTGTCTGTTGGCTGTCAACTTAGCAATTTTTATGGCAGATGAATTCAAGCCATTTTTGGTGTTCCTGCTAATCAACTAAGAAGTTTTCATTGGAGAATGGAGGTCATAAATAGTGGTGGTGACATGACATTCTTTCACCATCTCAACATTGCAATCCAATATTTAATTTTTATCTATTCTATTGCAGAAATGCTGGTGAGGGAGTTGTGGGCTTTTCTTAAGAGATGAATTCCATCTTCTGATGCTTGTGGGAAAATCAATATTCAGTGGCTTCTGGATTCTCACCATACATGAAATTATATTTTTTTTTGGATGATTGTCTGTCTATACGTTTAAAGATTTTTAGATTCATGGTTAATGGTATTTTTTTATTTAGTTTTATTAATGATTGTTGCAGAATTTATTAAAATTGTTTTTTTTTTCTTAAACACTGATTGTGATCATGTTTTCTCCGTCTACATATAGATATTCTCAACTCCATTTTTTCTTTTTGATTTTTTTACTACTACAGTTTTTCCCAAGGTAAACTTCAGAAAATCTTGCAGTTATTTGACTGTAAGTTATTTTTGGCTTTATCTTGGTGCAAAGTAAATCCTTTTTACAGTTTAAATTCTCTCACATCCGACTGGAGAAGTTTTTGTAACTTCATTGGATAGGGTTTTTTTTTTTTTTTATATTTCATACTATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAGTTTTGAGAATAAGTTGTTCTTTATCACCAATATCACTTATTCAGGTTGCATATTCACTAATCACTGCTTCCCATGTATACTCCAGTTTATGCTTTACATGTAGTATCGTGTAAATATGAGAGTCTTATAATTTTTTCTTTCACCATTTGTGTGGTTAATCCTTTCTCTGGAGTATAAGCTTTTAACGTGTTCTGTGTTGATGCAATTAGGTTCTTTGCTACTGCATCAATTCAACTTGATCACGCTGTTGTCATTTAAGATTTTGTTATTTATGGAAGGTACAAAATCTGTGGTCAATCCATTGTGTGACTATTTTGGTCTGATTCTTAACTTTCCCATAGTTCCACTGTATGTCCCATCTTTCTTTGTCAAATTTGTGGAAAGGGATTTTTCCAATCTCTCTGTTGATTCTAAGCTTATTAAATGCCTATTGGAGTTTGTAACTCGATAAGCGTTTCGTTAAAAGTGAAAAGATGTGTGTTCTGGATTGTTCTTTTTTGGTTGTCATCATCAAGGGTGTAATTATATCATCGTATTTTTCTTTGTTTCAATGAGTGTTTTTTTTTCACCCTTTCTAATGGGGTTGTTTACAGTTTACTTATGGGTGGTCTATCATGAATTGATTGTGCATTTGAAGGGTGCAGTTATAACTTGGCCAGCTAATAACAAAGGATATCTCTAACCAATGTTTTTTCCCTCCCCACAGAAGATATAAAGAGAAAAAGGAAGATGGAGCAGAGCCGGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGGTAAACCTTCTAATGGGACACAAGATATTCCAAGCTTTTGTTTCTTAGTGCAAATAATGTTCACTGACATTTTGTGTGAGTTCTTGGCCAGATATGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTTTTCTCCAGGGCTGGTAAGGTTTGTATGCACATCATATGGTTTATACCGCGTTTTCAGTTACTTTTAAAACTTTTCTTAAGATAAATGTTTGTAATTGATCAAACAAGTGTGGTCTATTTGACTCCCTATTATATAGGAATTAGGAAGCTTTGGGTACTTTTTTTCTATGTCATATATTGGATAGTAAAATATAAGATTAATCTAAGTTATCCATAGAAATTTTACTTCATTAACATTTTTTTTTGTTTAGTTGCTCCTCATGTATGGTATAAGGACTTTGGTTCTCTGTGATAAATATGCTCAATATAGAATCTGTTATTATGGGGTGGGAGAGGTGGTTATATGACATTGACAATTCATCCTTTCTATTTTCTATGATTTCTAATTTTAGGACCCCTCCAACATTTGTGCTAGTGTAGAGAAAATTATCAAACTTTCTGTCAGAAGGTGTAGGGGAAGGTGCGGGTTCTCATCTTGTCTGGTGGGGGATCTGTCTTTGAAGTTTTTGAAGGGAATACAAAACAAAAACCCCAGCAAAAGGAGCCACCCATAAACTAAACTAGCTATTAACATAATGACTCCTATCTAATAGAACAAGACCTAAAGGATAGTTAAAAAATTCCTTAGAAACATACGTTCGAGATATGTTAAATCAACACAAGACCACATCTCATCCCAATACTTCTCAATCCCATTAAAATTATTTTGTTCCTCTCAAGTCAAATCTTCCACGAAACAAGAAAGAAAGTAGAATGCCAAAAGGATATGCTCCTTATCACAAAATGGGGGGATGGAAGAGCACCTTCTCCATCAAACAACACCCTGTGTTCTGGGAGGTCTGTTTTTAAAGTTATTGAGGATGATGGGTTAGGTTTTGGGAATCTAGCATCCGATGTGGCAGTTTCTCTTAGAGCTTGATTCATTGTGGCATAAAACTATAGTGATTAAATTCATTCGATACACCAATGGTAGGATTATGGCTTTGTGGGGATTGACACTTCTAGGAACTTGGGAAAGCTATTTAGTGATGTTTGTCTTGTTTTCTTGTGTTAAATATATTGGTTGGTGAAGGATATTTGATATGTTTTTTGGAGGATCTTTGCGTTGGTTGTAGTTTTCTTCATCTCCTTTCTTCTCGTCTTTACTCTATTGTTACTAAGAAATTTGCCCCTGTTGGTTCCTTCAATTATTTCACTAAGCACTCGCTGTCTTTCAATTTCTACAACGAAAGGTCTTGTTTTACAAGGTATCTGGCTGAGTTGGTCGCTTGGTTTTTGTCCTTCATTGTTTAACATTATTCCCTGGTTGAAAAGATTGTAACATTAGGTCTCTTGAATCTTTTGATGTCTATTCATGTTTTTTTTTTTTTGGCGTTCATCTTGTCTGTTCTTCACATCAGACTCACTCCCCTTTTAGGCTTTTACCCAAGCTTTGGAAGGTTAAAGTTATGAAGAAAATCATATTTTTCTTCTAATTGGTGGCACTATAGAATTAACACTATGGATTTCATCTAACAGTCTTACTCCTTTGTGCTTGGAGTTCCAGTGGCGTGTTCTCTGTAAGCAGGCCTTTGAGTACTTTGATCATATTTGTTGGAGGTATTAGTTTGTTAGAAAGACTTGATGGGGCTTTTTTAGGTTTTTGGGGTGGCCTTCGTTTTTGAGCAATTCTTGTTGCACCCCATTTGGAAAAAAATGATTCTTCATCCTCCTTTCCTAAGCAAAGGGATGTTTCTATGACATGCAAGCGTCTTGGCAGTTTTATGGAATTCTGGTCAGTCATCAGAAGGAATGGAAGGGTTTTTACGGGTGTATAAAGGTGTTGTGAGTTTGAACTCTTTTAATGCCCTTTGTCTGGGCTGTCAGATCCATATATTGTTATGTGATATCCCCCGTATTTTATTATATAATTTTAAAATTCTATTCTCAGTAGTTGGAGCTTTTTCATGTAAATTTTTTAATGGCTCCATTTTTGCTTCAGTCATTATTTTTCCTGTGTTGTGAGTTTGTTTTGAGTTGGATTTTTTAATGCCTTCATCTGGGCTGTCAGGTTATTTTTTGTGATATTTCTCTTTTCTTAGTTCCTGATGCTATTTCTTGTAAATTTTATACTGGCACCATTTTTGGTTGAGTCCTTATATTTGATAGTATCTGAAAGAAACTTTTGAAAATAACGTTTGTTGCTCTCTTGGCTGGCTGTGGTCTGACCCTTATTGTTCCTCTCTCCGTCTCTCCGTCTCTCTTTTTCTTTCTTTTTTTTTTTTTAATTTTTTATAGAAAGTTTAGATTCTTCTTATTGAAAGTTCAGTTCATTATATCTATAAGAAGGAAAGAAGTTTCACCAACCTAGCAAGTCATTTTGCTGTCCATTTTTTTTTTCCGTTTGTTTTCAGTAATCGTCTTCGTCATGTATCTCCCTTATTGATGAATCACAACTTACAGGTGCGAGATGTGCGCCTTATAATGGATCGTAATTCAAGGCGTTCTAAAGGTGTTGGGTAAGATTAATGTTCTTGATGATTTTCACTTGGATTTGATGTAATAGCCATCAGCAGTTTGTGTGGTGTGTTTTCAATGATTTGATTCTGTGAGAATTTGAAGCAATTATTGACTGTTTCAAACTCAAGCTGGTTTCTTATGAAAAGAACAGTATTATGGTTGCTGTTTGTATGTGTAGTTTATTCTTTCTTTTCCTTGGATTTAATATCGTTCCTATATGTGCAGGTATGTTGAATTTGTAGATGCTATGTCTGTACCCATGGCTATAGCACTTTCAGGCCAGCCCCTGCTTGGTCAACCTGTTATGGTAAAGCCATCTGAAGCTGAGAAGAACCAGGTTCAATCAACTTCTGCTGCTGGTGGAACAGGTGGAGCAATGGGTCCCTACTCTGGTGGTGCTAGAAGGTTATATGTTGGCAATCTGCACCCCGAAATAACAGAAGATATGATTCGTCAGGTTGGCATATGAATATCATGGGGAAATATGTTACACAGTACTAATAATTCTGGGAGGCATATGTTACTGGAATGAATTCTGTTACGTGAAAATACCGTGTTCTTTGAAATCTTTCAGATTTAATTTCGTCTGTCAATTTCTATAATTTTTCCGTGTAATGTTAGTGCCTTGCTTGGATAAGATGCTTGCCTTTCCTCTTCTTCCAGGTTTTTGGATCTTTTGGCACTGTGGAGCTGGTTCAGATGCCCCTCGATGAAACTGGGCATTGCAAGGGTTTTGGATTTGTTCAGGTGAATATATATCTAGAAAATACTTTGGGAGGATGCAGGAACATTTAGACATAAGCTAATCAAATCTGTTTGACTGCAGTTCACACGACTTGAAGATGCTAGAAATGCACTGAGTTTGAACGGACAACTTGAGATTGGTGGTCGAATGATAAAGGTGATGCATGTTCATCATGTTTTCATATGCGTGTATTCTCTCCTCCTAATTTTTGGGCAGCATTCTTGATATGTTCATTTTTGTTGCGTTGAATAGCAGTCAAATGCTTATCCCCTATACTATACTGCATTAATTGTGGGAATTTTCTTAGGATTGAGAATTAAGATTTCTTTAATTGAGTGAATGTCAATGTGAGTGGGGAGGGACAGACTTAAAAATGTTCACTTTTAATCTTTTTATGGTAATAGCTCTGAGCATGAACTGTTGTCATTCTAGGATGCTATCAGGGGATATATTATTAGGGGTGGCATGGCATATTGTAATTACTTGGGAAGTTTATAATGGTGGTGTAGTTATAAATAGAGGGAGGTTGGGGGGTGGAGTGGTAATAAACAGAGGGAGTTTGGGGGTGGGCAAATTATTGGGAATTAGCAATCCCAATTTGTTAAAAACTTAAGGGTGGTCGGTAGGAAAAGTATTTTCCATAGTTTTATGTAGGAGAGAGATCGTTCCCTCGAGAGGCTATTACCATTGTAATTTCTCTATGATATTGCAATATAATTTTAGTAATATTTTCTTATAATCAGGACATTATCAGAGGCCCTTTACATGCTTCCTAGAACTGTGGGTCTTTCATCGAGGGTTAGATTGGCATCCCATGACAAATAGACTAAGAGAAGGTTTTGGAGGTTCCGATGAGTCTAGAGGAGATAAGAAGAATGGTATTCAGTTTCAAGGGTTGCAAGGCGCTTGTTGCTCAAGGTCTCGACTCTTCAACGAGTTCTTGGAAATGGGCATAATTAATGCTTTGATGATTGAGTACTTATGTCTTCTCTCCAAAAAGATAAATTCATGTAGAATCAAGGGCCTTAGGCCACAAGTTCAATGACCAACTTGAGTAATCATTTCCAAGACTATTGCAGGCAGGATGAGAGCCATAAAGTATATCTTATAATCATAACACTGCTTTGTTGTTGGCAGACAAACTATTGATGAAATTCTTATTGCTAATGAAGCTATTGAGGATGATAGAACTCGTAGACGAAAAGGTTGTATATTTAAAATTGATGTTGGAAATGCATACACATGATCATGTGGATTGGGATTTTTTCAACTAGGTTATGTGGAAGACTTCGGGTAAAATGGAGACGTGAGGAGGATGCTTGGGGATTGGGCATCTAGGTTAATATTTCCATCTAGCCAAATGGTTGTCGCACTTCTCTTTAGAGTTTGATGTGTTTGTGGCCTAAAATTGTGGTATGGGTGACATTTTTTTTATAAGATACTTTATTTCATTATCAAAAGGGTGACATTTTAACGGGTGGAAAATTAATGTGGTTGTCCATGATGCAGTCAGGAACGGTTAAAGAACTAATTCTCAGTGTCTGTTTCCCTTGTTTCTTCACTTTCCTCAATTTCCCAATTGGGCAAAAGAGTGAAATATTCTGTTTCCTCTTTGTCATTCAAGAGGTTAGCTTGTACTCATGTTCAAGATTGGCTTGTTTGGCCTCTCAAGTCATGTGACTCCTTTTTGGTAAAATCCCAAACAAGATTTACATTTTTTTTCCCTCTTGATTGTTGTGTTTGGGAGAATTAATACCATAAATTTGATTGAGAAAGTCGTTCTCTTCTTTGGCCTGCCGGGTTTTAGGTTGCATTTTCTCGAGATGTCATTTTGTCGAGATCTGGTTTAAGTTTTTCTAGGTTTTCTGGGTGCTGTGAGCTCTGGGTCAGTGCTGACATGCAACGTTGGAGGAGATTATCTTAAAACCCCCTTTTTGAGATCATTTTGATTGGATTTTGCGATCTTATGGAATATTTGGTTAGAAAGTAGCAAGAGTGCAAGAGGATTTGACCCCGGTCCTGTTGGGCTTGGGATCTCTAGGTCATATTTGCTTAGAGGTCTCAGGTTTGAATCTTTAGGTGAGTTTAATACAAAAGAAAACTCTGGATGTCCCTCGGGATCAGGCCTTGGGGTGGGCGCGGTTGCTCTAGGTATAGGGGACCAAAGCTCCTACTCCCGATTATTAAGAAGGTTTTGAGGAGACTCTTAGTAGAAATTTGGAGTTCAGCTCACCTCATTATTGTTTTTTTACCTTTAAATTTTTTTTAATGTGGAATAGTTGATGATCAGCTAAGCAAAGGGTTTACAACATAACAATTAACAAATATTGTAGATCATCTGAACCAGCAACATGGGTATTTTTTTTTGGTGTGGGCTTTAGGTTTGATTACAGACAAGCTGCACATGGAGAACAACATAGAGTATTCTAAATTATAATACAAGAAATAATATTGTTTGAAAGGGAAGTGGGAATTAACAGAGAAACGACTCAAAACTAGTAATAATGTGACGAGATTATTTCACTGAGTGCTCTATTCATATAGTATGGTAGTACGACTAATCAACTACAGTCGATTTTCTGGCTGGAATGATATCTCGACTTTTCATTGTCTCCTTATACAGGTGTCTACAGTCACAGATCAACCTGGAATGCAAGATATTGGAGCAAATACTGGAGACCTTGATGATGAAGATGGAGGTGGCTTGGTAAATGAGTCTTCTGTCTGTTTCTCTCTGTCTCCCTAATAATACAAATACATGAAGCTAAGTTATTCTGGATAATTAATTAAAAAAAACAAGAAAGTTGAGAAAGAGTAAAATTTATGATTATTTACTCACACTCCAGGCAAGTTGGTAAGATTATCTGAACCATTGCTTCTTTTATTGTTTGGAAGAATACGGTCTTCATATTTATTTCTTTGTTTTTCATTCTTGCTGCACTGGTAGGTTTCTTGAACATGTTTCATCGGCAAGTAACTACCCAGCTATCTGTTTCTCCTTTATTTTCTTTAGTTTTTAATATCATTTATTTTGGTCCGTAGATATTTGAATTTGGTTCATTGTGATATTTGAGATATCACCATTTAGAGAATCAAGATTTGTTTTTCTTCCTAGATATGATTTTTTTTTAACTCAGGAAATATATATTAATCTTAGAGATATAAAATATGTAAGCAAAGATGAAAAAACCTCTTACTAAAAGGAGATGGAAAATTATCTTTTTAAAAAATTGCCCCATTAATGAAGGTGGGAGTAATATCAAAATCTAAGCTTAGATCTTGTTTGATAACTTTTTATTTTTGTTTTCTGTTTTTAAAAATCATGTTTGTTTGCTCACAATTTCCATCGTATCTTTTTACCTTTCTTGAAATCATGTTTGAAATTCTTTGCCAAACTTGAAAACAAAAATAAGTTTTTTTGAAAGTTATTATTTTTGTTTTTTAATTTTCAATATTTGACTTCTTTTTGAAAATGTTTTTAAAAAGTAGGTAGCAAAATAAAAAAATACACAAGCGAAAGTAGTGTTTACAAGTTTAATTTTCAAAATTAAAAAACCAAAAACAAAACGGTTATCAATGCGCAACATTTGATGGATCAAATGGAGAGTAAGAATAGAACTTCACTGCCTTCACGTTTTAGTTATTATTGGCTATGGTCAATATCGTTTTACTGTTGAGCGAAAAAACTTTAAACCTACGTTTCTATCATGGATATTTTCTACCTCTTTTATATACCCCCATAGAAATTTTTTTGTAAGTTTCTTTTTCGAACTTTAGATTAAGAGTTCTTTGTATATGCTTTAGCTGCCACATTAACAAACGTGTTTCAATTTTCAGTCCTTAAATGCAAGTTCTCGAGCATCTCTGATGCAGAAGCTGGATCGAACTGGCACCGCATCTAGGTTGGTCTCTGTTGTGCTTATAATTGTTTGAAACTTTGTCAGGTTGGTCTCACATCTATTTTTTCTGCAGCATTGCTGGTTCTTTAGGTACACACGTTGTTAATAATACAGGCGCTACTTTGCCGATGGCACCAATCCTTGGAGCTGCATCTATCCCTTCCCTCGTTCCTTCTTTGGCTACCGTCCCGGCTTTTCCTGGACTTGGTGCAGGCATTCAGGTTCCCACTGTTACTGCCAATTTACTCGGTGTTGGTGCCCCAAGTGAATGCTTACTATTGAAGAACATGTTTGATCCTACAGCCGAGGTATCCTGCATCATTCAAAAAGGATCTGTTAACTTTTCCTTTTATGATTGAAGTCTAATTAGACCTTATGTTGGGTTGGGCAGTCGGAACCAAATTTTGATCTCGATATCAGAGACGACGTTGAAGAGGAGTGCTCTAGGTTCGGAAAATTGAGACATATACATGTTGACAAGTAAGTTTAGGACTTTACGTTCCTAAAATTGTACAACGTATAGTTTTTAATTCCTCCCCCTTTCCACAAACGTAGTTTGTTTATTTTCTTCTTTATGGACAGGAATAGCGCCGGTTTTGTGTATTTGAGATTTGAAAATTCACAGTCTGCTATGGAGGCTCAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGTAAATCTTTGGTTATTGTCATTACCCCATCTCCTAGAACCTAGGTTTGAAATATCAATGTTAGAAATCTCAGTTTTATGATAAAAGTAATGTTGATGTCGATTAATATTTTTGGAAAAATTATAAAAATAGAAAAGAACATAAACTATTTAAATTAATAAATAAGCATTTTACCATTTTTAATGATGGTTTGTTGATATTTTCTAGTACTTCATGAATTTTTTTATGATATAATGGAAATATGGATTCACCCCTTGTGTCGATGTCGAATTTATGAAGATGTCGAATTTATGGACATGTTGATGGAAATTTAGTACAATGAGTAGAAATGTCACTGACTTTCTATGTAATTTCTTTCATATTTTCAGGACATTCCTAGCTATGAAGCAAAATTTCCAGACAGTAGA

mRNA sequence

ATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAGGTGAAGGAAACTGCCAATGGCGGTGATGCAGAAATGAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAGTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCGAAGTCAGAGGACGAGTCACGTGATCATGATCGACATAGAGATAGGACGTCTTCGCAGCACAGGTCAAGGTCTAAAGATAGAGACCGTGATCGACGCAGGAGCAGTAAAGAATATAGGGAAAAAGAGGACAAAGAAAGGAATCGGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGATAGAGACCGAGACCGTGGTCATGATCGTGATAGAGAAAGTAGACGAGGTAGAGATGGTGAAAGGGATAGGGAGAGAGAACGGTCACGCCGAAGTAGAAGTCATTCGGAAAGACATCGCAGTGATCGGGATGAAAGCATAAGAGAGAGGAGCCGAGATAATGAATTCAAAGAAAGGGAAAAGGAGAGAGAGACAAGAGAGCGAGGCAGAGATGGCAGAAGATATAAAGAGAAAAAGGAAGATGGAGCAGAGCCGGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATATGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTTTTCTCCAGGGCTGGTAAGGTGCGAGATGTGCGCCTTATAATGGATCGTAATTCAAGGCGTTCTAAAGGTGTTGGGTATGTTGAATTTGTAGATGCTATGTCTGTACCCATGGCTATAGCACTTTCAGGCCAGCCCCTGCTTGGTCAACCTGTTATGGTAAAGCCATCTGAAGCTGAGAAGAACCAGGTTCAATCAACTTCTGCTGCTGGTGGAACAGGTGGAGCAATGGGTCCCTACTCTGGTGGTGCTAGAAGGTTATATGTTGGCAATCTGCACCCCGAAATAACAGAAGATATGATTCGTCAGGTTTTTGGATCTTTTGGCACTGTGGAGCTGGTTCAGATGCCCCTCGATGAAACTGGGCATTGCAAGGGTTTTGGATTTGTTCAGTTCACACGACTTGAAGATGCTAGAAATGCACTGAGTTTGAACGGACAACTTGAGATTGGTGGTCGAATGATAAAGGTGTCTACAGTCACAGATCAACCTGGAATGCAAGATATTGGAGCAAATACTGGAGACCTTGATGATGAAGATGGAGGTGGCTTGTCCTTAAATGCAAGTTCTCGAGCATCTCTGATGCAGAAGCTGGATCGAACTGGCACCGCATCTAGCATTGCTGGTTCTTTAGGTACACACGTTGTTAATAATACAGGCGCTACTTTGCCGATGGCACCAATCCTTGGAGCTGCATCTATCCCTTCCCTCGTTCCTTCTTTGGCTACCGTCCCGGCTTTTCCTGGACTTGGTGCAGGCATTCAGGTTCCCACTGTTACTGCCAATTTACTCGGTGTTGGTGCCCCAAGTGAATGCTTACTATTGAAGAACATGTTTGATCCTACAGCCGAGTCGGAACCAAATTTTGATCTCGATATCAGAGACGACGTTGAAGAGGAGTGCTCTAGGTTCGGAAAATTGAGACATATACATGTTGACAAGAATAGCGCCGGTTTTGTGTATTTGAGATTTGAAAATTCACAGTCTGCTATGGAGGCTCAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGACATTCCTAGCTATGAAGCAAAATTTCCAGACAGTAGA

Coding sequence (CDS)

ATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAGGTGAAGGAAACTGCCAATGGCGGTGATGCAGAAATGAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAGTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCGAAGTCAGAGGACGAGTCACGTGATCATGATCGACATAGAGATAGGACGTCTTCGCAGCACAGGTCAAGGTCTAAAGATAGAGACCGTGATCGACGCAGGAGCAGTAAAGAATATAGGGAAAAAGAGGACAAAGAAAGGAATCGGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGATAGAGACCGAGACCGTGGTCATGATCGTGATAGAGAAAGTAGACGAGGTAGAGATGGTGAAAGGGATAGGGAGAGAGAACGGTCACGCCGAAGTAGAAGTCATTCGGAAAGACATCGCAGTGATCGGGATGAAAGCATAAGAGAGAGGAGCCGAGATAATGAATTCAAAGAAAGGGAAAAGGAGAGAGAGACAAGAGAGCGAGGCAGAGATGGCAGAAGATATAAAGAGAAAAAGGAAGATGGAGCAGAGCCGGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATATGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTTTTCTCCAGGGCTGGTAAGGTGCGAGATGTGCGCCTTATAATGGATCGTAATTCAAGGCGTTCTAAAGGTGTTGGGTATGTTGAATTTGTAGATGCTATGTCTGTACCCATGGCTATAGCACTTTCAGGCCAGCCCCTGCTTGGTCAACCTGTTATGGTAAAGCCATCTGAAGCTGAGAAGAACCAGGTTCAATCAACTTCTGCTGCTGGTGGAACAGGTGGAGCAATGGGTCCCTACTCTGGTGGTGCTAGAAGGTTATATGTTGGCAATCTGCACCCCGAAATAACAGAAGATATGATTCGTCAGGTTTTTGGATCTTTTGGCACTGTGGAGCTGGTTCAGATGCCCCTCGATGAAACTGGGCATTGCAAGGGTTTTGGATTTGTTCAGTTCACACGACTTGAAGATGCTAGAAATGCACTGAGTTTGAACGGACAACTTGAGATTGGTGGTCGAATGATAAAGGTGTCTACAGTCACAGATCAACCTGGAATGCAAGATATTGGAGCAAATACTGGAGACCTTGATGATGAAGATGGAGGTGGCTTGTCCTTAAATGCAAGTTCTCGAGCATCTCTGATGCAGAAGCTGGATCGAACTGGCACCGCATCTAGCATTGCTGGTTCTTTAGGTACACACGTTGTTAATAATACAGGCGCTACTTTGCCGATGGCACCAATCCTTGGAGCTGCATCTATCCCTTCCCTCGTTCCTTCTTTGGCTACCGTCCCGGCTTTTCCTGGACTTGGTGCAGGCATTCAGGTTCCCACTGTTACTGCCAATTTACTCGGTGTTGGTGCCCCAAGTGAATGCTTACTATTGAAGAACATGTTTGATCCTACAGCCGAGTCGGAACCAAATTTTGATCTCGATATCAGAGACGACGTTGAAGAGGAGTGCTCTAGGTTCGGAAAATTGAGACATATACATGTTGACAAGAATAGCGCCGGTTTTGTGTATTTGAGATTTGAAAATTCACAGTCTGCTATGGAGGCTCAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGACATTCCTAGCTATGAAGCAAAATTTCCAGACAGTAGA

Protein sequence

MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRSKSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDRDRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKERETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAAGGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFVQFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATVPAFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR

Homology

[Close]

BLAST of MS022176 vs. NCBI nr
Match: XP_022136109.1 (RNA-binding protein 39 isoform X2 [Momordica charantia])

HSP 1 Score: 1089.7 bits (2817), Expect = 0.0e+00
Identity = 592/595 (99.50%), Postives = 593/595 (99.66%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDESRDHDRHRDRTSSQHRSRSKDRD DRRRSSKEYREKEDKERNREERSSKDRDVDR
Sbjct: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDXDRRRSSKEYREKEDKERNREERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERH SDRDESIRERSRDNEFKEREKE
Sbjct: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHCSDRDESIRERSRDNEFKEREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD
Sbjct: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
           GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV
Sbjct: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS
Sbjct: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATVPAFPGL 480
           RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLAT+PAFPGL
Sbjct: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATIPAFPGL 480

Query: 481 GAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHI 540
           GAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHI
Sbjct: 481 GAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHI 540

Query: 541 HVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           HVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 HVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of MS022176 vs. NCBI nr
Match: XP_022136108.1 (RNA-binding protein 39 isoform X1 [Momordica charantia])

HSP 1 Score: 1083.6 bits (2801), Expect = 0.0e+00
Identity = 592/600 (98.67%), Postives = 593/600 (98.83%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDESRDHDRHRDRTSSQHRSRSKDRD DRRRSSKEYREKEDKERNREERSSKDRDVDR
Sbjct: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDXDRRRSSKEYREKEDKERNREERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERH SDRDESIRERSRDNEFKEREKE
Sbjct: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHCSDRDESIRERSRDNEFKEREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD
Sbjct: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
           GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV
Sbjct: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGL-----S 420
           QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGL     S
Sbjct: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLVKESSS 420

Query: 421 LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATVP 480
           LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLAT+P
Sbjct: 421 LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATIP 480

Query: 481 AFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFG 540
           AFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFG 540

Query: 541 KLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           KLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 600

[Close]

BLAST of MS022176 vs. NCBI nr
Match: XP_022969035.1 (RNA-binding protein 39 [Cucurbita maxima] >XP_022969036.1 RNA-binding protein 39 [Cucurbita maxima])

HSP 1 Score: 962.6 bits (2487), Expect = 1.6e-276
Identity = 526/598 (87.96%), Postives = 561/598 (93.81%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYK+DGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDES DHDRHRDRTSS+HRSRS+DRDRDR  S KE+R KED+E+N+EERSSKDRDVDR
Sbjct: 61  KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           D++R HD D   RRGRDGE+DRERERS RSRSHSERHRSDRDES+R+R+RDNEF+EREKE
Sbjct: 121 DKERVHDHD---RRGRDGEKDRERERSHRSRSHSERHRSDRDESMRQRTRDNEFREREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RE+RERGRDGRR+KEKKEDG EPEADPERDQRTVFAYQI LKATERDV+EFFSRAGKVRD
Sbjct: 181 RESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQ LL QPVMVKPSEAEKNQ QSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
            G GG MGPY+GGARRLYVGNLHP ITED +RQVFG+FG VELVQMPLDE+GHCKGFGF+
Sbjct: 301 AGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFI 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QF+RLEDARNALSLNGQLEI GRMIKVSTVTDQPG+QDIGA+TGDLDDEDG GLSLNASS
Sbjct: 361 QFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSL--VPSLATVPAFP 480
           RASLMQKLDRTGTASSIAGSLGTHVVNNTGAT+PMAPILG  +IPSL    SL +VPAFP
Sbjct: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATMPMAPILGVGTIPSLGVATSLVSVPAFP 480

Query: 481 GLG-AGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKL 540
           GLG AG+QVPTV ANLLGVG PSECLLLKNMFDPTAE EP FD+DIRDDVEEECSRFGKL
Sbjct: 481 GLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKL 540

Query: 541 RHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           +HI+VDKNSAGFVYLRF NS++AM+AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of MS022176 vs. NCBI nr
Match: XP_022953124.1 (RNA-binding protein 39-like [Cucurbita moschata] >XP_022953126.1 RNA-binding protein 39-like [Cucurbita moschata] >XP_023554691.1 RNA-binding protein 39-like [Cucurbita pepo subsp. pepo] >XP_023554692.1 RNA-binding protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 960.7 bits (2482), Expect = 6.0e-276
Identity = 526/598 (87.96%), Postives = 560/598 (93.65%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYK+DGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDES DHDRHRDRTSS+HRSRS+DRDRDR  S KE+R KED+E+N+EERSSKDRDVDR
Sbjct: 61  KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           D++R HD D   RRGRDGE+DRERERS RSRSHSERHRSDRDESIR+R+RDNEF+EREKE
Sbjct: 121 DKERVHDHD---RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RE+RERGRDGRR+KEKKEDG EPEADPERDQRTVFAYQI LKATERDV+EFFSRAGKVRD
Sbjct: 181 RESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQ LL QPVMVKPSEAEKNQ QSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
            G GG MGPY+GGARRLYVGNLHP ITED +RQVFG+FG VELVQMPLDE+GHCKGFGF+
Sbjct: 301 AGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFI 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QF+RLEDARNALSLNGQLEI GRMIKVSTVTDQPG+QDIGA+TGDLDDEDG GLSLNASS
Sbjct: 361 QFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSL--VPSLATVPAFP 480
           RASLMQKLDRTGTASSIAGSLGTHVVNNTGAT+ MAPILG  +IPSL    SL +VPAFP
Sbjct: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFP 480

Query: 481 GLG-AGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKL 540
           GLG AG+QVPTV ANLLGVG PSECLLLKNMFDPTAE EP FD+DIRDDVEEECSRFGKL
Sbjct: 481 GLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKL 540

Query: 541 RHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           +HI+VDKNSAGFVYLRF NS++AM+AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of MS022176 vs. NCBI nr
Match: XP_011658601.1 (RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744308.1 RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744309.1 RNA-binding protein 39 isoform X1 [Cucumis sativus] >KGN43267.1 hypothetical protein Csa_020331 [Cucumis sativus])

HSP 1 Score: 959.5 bits (2479), Expect = 1.3e-275
Identity = 528/597 (88.44%), Postives = 559/597 (93.63%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGD EMKSGDKH SRSSKYKSDGKDDGEHRSK  
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGEHRSKHL 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KS+DESRD DRHRDRTSS+HRSRS++RDRDR RSSKE R KED+E NREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNREERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           D++R HDRD   RRGRDGER+RERE+SRRSRS SERHRSDRD+ IRERSRDNE +EREKE
Sbjct: 121 DKERSHDRD---RRGRDGERNREREQSRRSRSRSERHRSDRDDGIRERSRDNELREREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RE+RERGRDGRRYK+KK++ AEPEADPERDQRTVFAYQI LKATERDVYEFFSRAGKVRD
Sbjct: 181 RESRERGRDGRRYKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQ LL QPVMVKPSEAEKNQVQSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
           GG GGAMGPYSGGARRLYVGNLHP ITED +RQVFG+FGTVELVQMP+DE+GHCKGFGF+
Sbjct: 301 GGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPVDESGHCKGFGFI 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QFTRLEDARNALSLNGQLEI GR IKVSTVTDQPG+QD+GA+TGDLD+EDGGGLSLNASS
Sbjct: 361 QFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLV--PSLATVPAFP 480
           RASLMQKLDRTG ASSIAGSLGTHVVNNTGAT+P APILG A+IPSL    SLA  PAFP
Sbjct: 421 RASLMQKLDRTGAASSIAGSLGTHVVNNTGATMP-APILGGATIPSLSVGTSLAAFPAFP 480

Query: 481 GLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLR 540
           GLGAG+QVP VTANLLGVG PSECLLLKNMFDPTAESEP FDLDIRDDVEEECSRFGKL+
Sbjct: 481 GLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLK 540

Query: 541 HIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           HI+VD+NSAGFVYLRFE S+SAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 HIYVDRNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of MS022176 vs. ExPASy Swiss-Prot
Match: Q5RC80 (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.9e-62
Identity = 199/539 (36.92%), Postives = 284/539 (52.69%), Query Frame = 0


Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           K E++    + H +R+  + +S+S+ R  +R+RS                  SK+R   R
Sbjct: 17  KDENKLSSANGHEERSKKRKKSKSRSRSHERKRS-----------------KSKERKRSR 76

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           DR+R   + RE +R R  ER R R RS R R    R+RS         +   +       
Sbjct: 77  DRERKKSKSRERKRSRSKERRRSRSRS-RDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSI 136

Query: 181 RETRERGRDGRRYKEKKEDGAEP---EADPERDQRTVFAYQICLKATERDVYEFFSRAGK 240
           + +R R R    +++ K    EP       ERD RTVF  Q+  +   RD+ EFFS  GK
Sbjct: 137 KLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGK 196

Query: 241 VRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQST 300
           VRDVR+I DRNSRRSKG+ YVEFVD  SVP+AI L+GQ +LG P++V+ S+AEKN+    
Sbjct: 197 VRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR---- 256

Query: 301 SAAGGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLD-ETGHCKG 360
             A      +   S G  RLYVG+LH  ITEDM+R +F  FG +E +Q+ +D ETG  KG
Sbjct: 257 --AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG 316

Query: 361 FGFVQFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSL 420
           +GF+ F+  E A+ AL      E+ GR +KV  VT++       ++  D D+ +  G+ L
Sbjct: 317 YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDL 376

Query: 421 NASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATVPA 480
             + R  LM +L         A   G  +       L M+  L   ++  L   L+    
Sbjct: 377 GTTGRLQLMARL---------AEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTE 436

Query: 481 FPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGK 540
              L A   V  +          ++C  L NMF+P  E E  +D +I+DDV EEC++ G 
Sbjct: 437 ASALAAAASVQPLA---------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGG 496

Query: 541 LRHIHVDKNSA-GFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 595
           + HI+VDKNSA G VY++  +  +A+ A  AL+GRWFAGKMI A ++ +P+Y   FPDS
Sbjct: 497 VIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 512

[Close]

BLAST of MS022176 vs. ExPASy Swiss-Prot
Match: Q8VH51 (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-61
Identity = 202/541 (37.34%), Postives = 286/541 (52.87%), Query Frame = 0


Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           K E++    + H +R+  + +S+S+ R  +R+RS                  SK+R   R
Sbjct: 17  KDENKLNSANGHEERSKKRKKSKSRSRSHERKRS-----------------KSKERKRSR 76

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           DR+R   + RE +R R  ER R R RS R R    R+RS         +   +       
Sbjct: 77  DRERKKSKSRERKRSRSKERRRSRSRS-RDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSI 136

Query: 181 RETRERGRDGRRYKEKKEDGAEP---EADPERDQRTVFAYQICLKATERDVYEFFSRAGK 240
           + +R R R    +++ K    EP       ERD RTVF  Q+  +   RD+ EFFS  GK
Sbjct: 137 KLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGK 196

Query: 241 VRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQST 300
           VRDVR+I DRNSRRSKG+ YVEFVD  SVP+AI L+GQ +LG P++V+ S+AEKN+    
Sbjct: 197 VRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR---- 256

Query: 301 SAAGGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLD-ETGHCKG 360
             A      +   S G  RLYVG+LH  ITEDM+R +F  FG +E +Q+ +D ETG  KG
Sbjct: 257 --AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG 316

Query: 361 FGFVQFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSL 420
           +GF+ F+  E A+ AL      E+ GR +KV  VT++       ++  D D+ +  G+ L
Sbjct: 317 YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDL 376

Query: 421 NASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPIL--GAASIPSLVPSLATV 480
             + R  LM +L         A   G  +       L M+  L  GA +  S V  L T 
Sbjct: 377 GTTGRLQLMARL---------AEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQT- 436

Query: 481 PAFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRF 540
                L    +   + A        ++C  L NMF+P  E E  +D +I+DDV EEC++ 
Sbjct: 437 ----RLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH 496

Query: 541 GKLRHIHVDKNSA-GFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPD 595
           G + HI+VDKNSA G VY++  +  +A+ A  AL+GRWFAGKMI A ++ +P+Y   FPD
Sbjct: 497 GGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPD 518

[Close]

BLAST of MS022176 vs. ExPASy Swiss-Prot
Match: Q14498 (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 2.0e-61
Identity = 202/541 (37.34%), Postives = 286/541 (52.87%), Query Frame = 0


Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           K E++    + H +R+  + +S+S+ R  +R+RS                  SK+R   R
Sbjct: 17  KDENKLSSANGHEERSKKRKKSKSRSRSHERKRS-----------------KSKERKRSR 76

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           DR+R   + RE +R R  ER R R RS R R    R+RS         +   +       
Sbjct: 77  DRERKKSKSRERKRSRSKERRRSRSRS-RDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSI 136

Query: 181 RETRERGRDGRRYKEKKEDGAEP---EADPERDQRTVFAYQICLKATERDVYEFFSRAGK 240
           + +R R R    +++ K    EP       ERD RTVF  Q+  +   RD+ EFFS  GK
Sbjct: 137 KLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGK 196

Query: 241 VRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQST 300
           VRDVR+I DRNSRRSKG+ YVEFVD  SVP+AI L+GQ +LG P++V+ S+AEKN+    
Sbjct: 197 VRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR---- 256

Query: 301 SAAGGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLD-ETGHCKG 360
             A      +   S G  RLYVG+LH  ITEDM+R +F  FG +E +Q+ +D ETG  KG
Sbjct: 257 --AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG 316

Query: 361 FGFVQFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSL 420
           +GF+ F+  E A+ AL      E+ GR +KV  VT++       ++  D D+ +  G+ L
Sbjct: 317 YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDL 376

Query: 421 NASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPIL--GAASIPSLVPSLATV 480
             + R  LM +L         A   G  +       L M+  L  GA +  S V  L T 
Sbjct: 377 GTTGRLQLMARL---------AEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQT- 436

Query: 481 PAFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRF 540
                L    +   + A        ++C  L NMF+P  E E  +D +I+DDV EEC++ 
Sbjct: 437 ----RLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH 496

Query: 541 GKLRHIHVDKNSA-GFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPD 595
           G + HI+VDKNSA G VY++  +  +A+ A  AL+GRWFAGKMI A ++ +P+Y   FPD
Sbjct: 497 GGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPD 518

[Close]

BLAST of MS022176 vs. ExPASy Swiss-Prot
Match: O13845 (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-35
Identity = 177/583 (30.36%), Postives = 274/583 (47.00%), Query Frame = 0


Query: 42  SSKYKSDGK-----DDGEHRSKRSKSEDESRDHDRHRD---RTSSQHRSRSKDRDRDRRR 101
           S  Y+S+G+         +R  RS  +   R+   + D     SS HR+      R  RR
Sbjct: 64  SKNYESEGRLTPPPVSMGYRYARSSKQSFQREDSGYNDDVVTNSSSHRT-----PRHHRR 123

Query: 102 SSKEYREKED-KERNREERSSKDRDVDRDRDRGHDRDRESRRGRD---GERDRER-ERSR 161
           S   Y  + D   R+    SS D    R   R  DRDR SR  R      R R R +   
Sbjct: 124 S---YSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYS 183

Query: 162 RSRSHSERH-----RSDRDESIRERSRDNEFKEREKERETRERGRDGRRYKEKKEDGAEP 221
           RS  +S RH     R +   S   R+ D ++++   +  + ER R   R +E+    +E 
Sbjct: 184 RSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLSE- 243

Query: 222 EADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDA 281
               ERD+RTVF  Q+  + T R++Y+FF +AG VRD +++ D+ S RSKGV YVEF   
Sbjct: 244 ---EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHE 303

Query: 282 MSVPMAIALSGQPLLGQPVMVKPSEAEKN-QVQSTSAAGGTGGAMGPYSGGARRLYVGNL 341
            SV  AIALSG+ LLG PV+V+ +EAEKN + +  +       A  P+     RL V N+
Sbjct: 304 DSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPF----HRLCVSNI 363

Query: 342 HPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFVQFTRLEDARNALSLNGQLEIGG 401
           H  +T++ ++ +F  FG +E V +  D+    KGFG++Q+     ARNAL      ++ G
Sbjct: 364 HFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAG 423

Query: 402 RMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASSRASLMQKLDRT------GTASS 461
           R ++V    D+                          + +S++++ D T         S 
Sbjct: 424 RNMRVCLGNDK----------------------FTTETTSSMLKRFDETLARQERSQPSQ 483

Query: 462 IAGSLGTHVVNNTGATLPMAPILGAA---SIPSLVPSLATVPAFPGLGAGIQVPTVTANL 521
             G   T+   +     P++P    +   +   L+  LA           +  P      
Sbjct: 484 RNGGSSTYESQDYREAAPLSPTEEESRPITRDELMKKLARSEDISDNSKLVSEPEPPIR- 543

Query: 522 LGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEEC-SRFGKLRHIHVDKNSAGFVYL 581
                 S C LL+NMF+P  E+ PN+  ++  DV+EEC  ++GK+ HI V  N  G +++
Sbjct: 544 ------SRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFV 601

Query: 582 RFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           +FEN+  A +A   L+ RWF G+ I A+ +    Y  KFP+++
Sbjct: 604 KFENADFAEKAITGLHQRWFGGRTIKASILPETDYYFKFPNAK 601

[Close]

BLAST of MS022176 vs. ExPASy Swiss-Prot
Match: Q86U06 (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.8e-32
Identity = 165/464 (35.56%), Postives = 224/464 (48.28%), Query Frame = 0


Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           K EDE +  +  +D  S+   S S     +    S    E   K+R+R    S+DR   R
Sbjct: 20  KEEDEQQRKEVKKDYPSNTTSSTS--NSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSR 79

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
            RDR   R R SR      R   R+   RSRS   RH S+       RSRD+  ++R   
Sbjct: 80  SRDRDRYRRRNSR-----SRSPGRQCRHRSRSWDRRHGSE------SRSRDHRREDRVHY 139

Query: 181 RET------RERGRDGRRYKEKKE-----DGAEPEADPERDQRTVFAYQICLKATERDVY 240
           R        R        ++EK       D   PE   ERD RTVF  Q+  +   RD+ 
Sbjct: 140 RSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPE---ERDARTVFCMQLAARIRPRDLE 199

Query: 241 EFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEA 300
           +FFS  GKVRDVR+I DRNSRRSKG+ YVEF +  SVP+AI L+GQ LLG P++V+ S+A
Sbjct: 200 DFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 259

Query: 301 EKNQVQSTSAAGGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVE-LVQMPL 360
           EKN++ + +     G      +GG  RLYVG+LH  ITEDM+R +F  FG ++ +V M  
Sbjct: 260 EKNRLAAMANNLQKG------NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 319

Query: 361 DETGHCKGFGFVQFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQ-PGMQDIGANTGDLD 420
            +TG  KG+GF+ F+  E AR AL      E+ GR ++V  VT++  G  DI    GD +
Sbjct: 320 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE 379

Query: 421 DEDGGGLSLNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSL 480
            + G     +A  R  LM KL         A   G  + +   A    A    A  +   
Sbjct: 380 LDLG-----SAGGRFQLMAKL---------AEGAGIQLPSTAAAAAAAAAQAAALQLNGA 436

Query: 481 VPSLATVPAFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDP 512
           VP  A  PA            +TA    +   S+C  L ++F P
Sbjct: 440 VPLGALNPA-----------ALTALSPALNLASQCFQLSSLFTP 436

[Close]

BLAST of MS022176 vs. ExPASy TrEMBL
Match: A0A6J1C3C8 (RNA-binding protein 39 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007883 PE=4 SV=1)

HSP 1 Score: 1089.7 bits (2817), Expect = 0.0e+00
Identity = 592/595 (99.50%), Postives = 593/595 (99.66%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDESRDHDRHRDRTSSQHRSRSKDRD DRRRSSKEYREKEDKERNREERSSKDRDVDR
Sbjct: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDXDRRRSSKEYREKEDKERNREERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERH SDRDESIRERSRDNEFKEREKE
Sbjct: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHCSDRDESIRERSRDNEFKEREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD
Sbjct: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
           GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV
Sbjct: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS
Sbjct: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATVPAFPGL 480
           RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLAT+PAFPGL
Sbjct: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATIPAFPGL 480

Query: 481 GAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHI 540
           GAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHI
Sbjct: 481 GAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHI 540

Query: 541 HVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           HVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 HVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of MS022176 vs. ExPASy TrEMBL
Match: A0A6J1C6Q3 (RNA-binding protein 39 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007883 PE=4 SV=1)

HSP 1 Score: 1083.6 bits (2801), Expect = 0.0e+00
Identity = 592/600 (98.67%), Postives = 593/600 (98.83%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDESRDHDRHRDRTSSQHRSRSKDRD DRRRSSKEYREKEDKERNREERSSKDRDVDR
Sbjct: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDXDRRRSSKEYREKEDKERNREERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERH SDRDESIRERSRDNEFKEREKE
Sbjct: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHCSDRDESIRERSRDNEFKEREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD
Sbjct: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
           GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV
Sbjct: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGL-----S 420
           QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGL     S
Sbjct: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLVKESSS 420

Query: 421 LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATVP 480
           LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLAT+P
Sbjct: 421 LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLVPSLATIP 480

Query: 481 AFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFG 540
           AFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFG
Sbjct: 481 AFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFG 540

Query: 541 KLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           KLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 600

[Close]

BLAST of MS022176 vs. ExPASy TrEMBL
Match: A0A6J1HYU3 (RNA-binding protein 39 OS=Cucurbita maxima OX=3661 GN=LOC111468152 PE=4 SV=1)

HSP 1 Score: 962.6 bits (2487), Expect = 7.6e-277
Identity = 526/598 (87.96%), Postives = 561/598 (93.81%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYK+DGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDES DHDRHRDRTSS+HRSRS+DRDRDR  S KE+R KED+E+N+EERSSKDRDVDR
Sbjct: 61  KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           D++R HD D   RRGRDGE+DRERERS RSRSHSERHRSDRDES+R+R+RDNEF+EREKE
Sbjct: 121 DKERVHDHD---RRGRDGEKDRERERSHRSRSHSERHRSDRDESMRQRTRDNEFREREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RE+RERGRDGRR+KEKKEDG EPEADPERDQRTVFAYQI LKATERDV+EFFSRAGKVRD
Sbjct: 181 RESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQ LL QPVMVKPSEAEKNQ QSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
            G GG MGPY+GGARRLYVGNLHP ITED +RQVFG+FG VELVQMPLDE+GHCKGFGF+
Sbjct: 301 AGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFI 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QF+RLEDARNALSLNGQLEI GRMIKVSTVTDQPG+QDIGA+TGDLDDEDG GLSLNASS
Sbjct: 361 QFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSL--VPSLATVPAFP 480
           RASLMQKLDRTGTASSIAGSLGTHVVNNTGAT+PMAPILG  +IPSL    SL +VPAFP
Sbjct: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATMPMAPILGVGTIPSLGVATSLVSVPAFP 480

Query: 481 GLG-AGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKL 540
           GLG AG+QVPTV ANLLGVG PSECLLLKNMFDPTAE EP FD+DIRDDVEEECSRFGKL
Sbjct: 481 GLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKL 540

Query: 541 RHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           +HI+VDKNSAGFVYLRF NS++AM+AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of MS022176 vs. ExPASy TrEMBL
Match: A0A6J1GM48 (RNA-binding protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111455622 PE=4 SV=1)

HSP 1 Score: 960.7 bits (2482), Expect = 2.9e-276
Identity = 526/598 (87.96%), Postives = 560/598 (93.65%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYK+DGKDDGEHRSKRS
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRS 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KSEDES DHDRHRDRTSS+HRSRS+DRDRDR  S KE+R KED+E+N+EERSSKDRDVDR
Sbjct: 61  KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           D++R HD D   RRGRDGE+DRERERS RSRSHSERHRSDRDESIR+R+RDNEF+EREKE
Sbjct: 121 DKERVHDHD---RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RE+RERGRDGRR+KEKKEDG EPEADPERDQRTVFAYQI LKATERDV+EFFSRAGKVRD
Sbjct: 181 RESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQ LL QPVMVKPSEAEKNQ QSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
            G GG MGPY+GGARRLYVGNLHP ITED +RQVFG+FG VELVQMPLDE+GHCKGFGF+
Sbjct: 301 AGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFI 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QF+RLEDARNALSLNGQLEI GRMIKVSTVTDQPG+QDIGA+TGDLDDEDG GLSLNASS
Sbjct: 361 QFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSL--VPSLATVPAFP 480
           RASLMQKLDRTGTASSIAGSLGTHVVNNTGAT+ MAPILG  +IPSL    SL +VPAFP
Sbjct: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFP 480

Query: 481 GLG-AGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKL 540
           GLG AG+QVPTV ANLLGVG PSECLLLKNMFDPTAE EP FD+DIRDDVEEECSRFGKL
Sbjct: 481 GLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKL 540

Query: 541 RHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           +HI+VDKNSAGFVYLRF NS++AM+AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 KHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of MS022176 vs. ExPASy TrEMBL
Match: A0A0A0K4Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014530 PE=4 SV=1)

HSP 1 Score: 959.5 bits (2479), Expect = 6.4e-276
Identity = 528/597 (88.44%), Postives = 559/597 (93.63%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKRS 60
           MDFDEYDYLEKTVENPEGQKVKETANGGD EMKSGDKH SRSSKYKSDGKDDGEHRSK  
Sbjct: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGEHRSKHL 60

Query: 61  KSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKEDKERNREERSSKDRDVDR 120
           KS+DESRD DRHRDRTSS+HRSRS++RDRDR RSSKE R KED+E NREERSSKDRDVDR
Sbjct: 61  KSDDESRDRDRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNREERSSKDRDVDR 120

Query: 121 DRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKEREKE 180
           D++R HDRD   RRGRDGER+RERE+SRRSRS SERHRSDRD+ IRERSRDNE +EREKE
Sbjct: 121 DKERSHDRD---RRGRDGERNREREQSRRSRSRSERHRSDRDDGIRERSRDNELREREKE 180

Query: 181 RETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRD 240
           RE+RERGRDGRRYK+KK++ AEPEADPERDQRTVFAYQI LKATERDVYEFFSRAGKVRD
Sbjct: 181 RESRERGRDGRRYKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRD 240

Query: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAA 300
           VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQ LL QPVMVKPSEAEKNQVQSTSAA
Sbjct: 241 VRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAA 300

Query: 301 GGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFV 360
           GG GGAMGPYSGGARRLYVGNLHP ITED +RQVFG+FGTVELVQMP+DE+GHCKGFGF+
Sbjct: 301 GGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPVDESGHCKGFGFI 360

Query: 361 QFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLSLNASS 420
           QFTRLEDARNALSLNGQLEI GR IKVSTVTDQPG+QD+GA+TGDLD+EDGGGLSLNASS
Sbjct: 361 QFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASS 420

Query: 421 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSLV--PSLATVPAFP 480
           RASLMQKLDRTG ASSIAGSLGTHVVNNTGAT+P APILG A+IPSL    SLA  PAFP
Sbjct: 421 RASLMQKLDRTGAASSIAGSLGTHVVNNTGATMP-APILGGATIPSLSVGTSLAAFPAFP 480

Query: 481 GLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLR 540
           GLGAG+QVP VTANLLGVG PSECLLLKNMFDPTAESEP FDLDIRDDVEEECSRFGKL+
Sbjct: 481 GLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLK 540

Query: 541 HIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 596
           HI+VD+NSAGFVYLRFE S+SAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 541 HIYVDRNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of MS022176 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 607.1 bits (1564), Expect = 1.6e-173
Identity = 382/603 (63.35%), Postives = 451/603 (74.79%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETAN-GGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKR 60
           MDFDEY+YLEKTVENP  +   E  N GGD ++KS  K RSRSS+          HR  +
Sbjct: 1   MDFDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDK 60

Query: 61  SKSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKE-DKERNREERSSKDRDV 120
            K  DE  D  R   R+ S HRSRS+DR+RDR RSS+E+R+++ +K+ ++EER+ KDR+ 
Sbjct: 61  KKERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRER 120

Query: 121 DRDRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKERE 180
           DRD+DR         +GRD E+D    RSRRSRS SERHRS      RE+S + E     
Sbjct: 121 DRDKDR-------DSKGRDHEKD----RSRRSRSRSERHRSQE----REKSLEIE----P 180

Query: 181 KERETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKV 240
           KERET++R RD RR+K+KKED  EPEADPERDQRTVFAYQI L+ATERDVYEFFSRAGKV
Sbjct: 181 KERETKDRDRDRRRHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKV 240

Query: 241 RDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTS 300
           RDVR+IMDR SRRS+G+GYVEF D MSVPMAIALSGQPLLGQPVMVKPSEAEKN VQST+
Sbjct: 241 RDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTT 300

Query: 301 AAGGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFG 360
           AA G GG +GPYSGGARRLYVGNLH  ++ED +R+VF SFG+VELVQ+P DETG CKGFG
Sbjct: 301 AAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFG 360

Query: 361 FVQFTRLEDARNALSLNGQLEIGGRMIKVSTVTDQPGMQDIG--ANTGDLDDEDGGGLSL 420
           FVQF RLEDARNAL+LNGQLEI GR IKVS VTDQ  + + G    TGDLDD+DGGGLSL
Sbjct: 361 FVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSL 420

Query: 421 NASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLPMAPILGAASIPSL-VPSL--AT 480
           NA SRA LMQKLDR+GTASS            TG T   +   G ++I SL  P+L   +
Sbjct: 421 NAQSRALLMQKLDRSGTASS------------TGLTTAASFNGGVSTISSLAAPALVQGS 480

Query: 481 VPAFPGL-GAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECS 540
            PA  GL G+GI    + A    +G PSECLLLKNMFDP+ E+E +FD DI++DV+EECS
Sbjct: 481 FPAVAGLAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECS 540

Query: 541 RFGKLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFP 596
           +FGKL HI VDKNS GFVYLRFEN+Q+A+ AQRAL+GRWFAGKMI AT+M   +YEAKFP
Sbjct: 541 KFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFP 559

[Close]

BLAST of MS022176 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 583.9 bits (1504), Expect = 1.4e-166
Identity = 382/641 (59.59%), Postives = 451/641 (70.36%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETAN-GGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKR 60
           MDFDEY+YLEKTVENP  +   E  N GGD ++KS  K RSRSS+          HR  +
Sbjct: 1   MDFDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDK 60

Query: 61  SKSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKE-DKERNREERSSKDRDV 120
            K  DE  D  R   R+ S HRSRS+DR+RDR RSS+E+R+++ +K+ ++EER+ KDR+ 
Sbjct: 61  KKERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRER 120

Query: 121 DRDRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKERE 180
           DRD+DR         +GRD E+D    RSRRSRS SERHRS      RE+S + E     
Sbjct: 121 DRDKDR-------DSKGRDHEKD----RSRRSRSRSERHRSQE----REKSLEIE----P 180

Query: 181 KERETRERGRDGR-----------------------------RYKEKKEDGAEPEADPER 240
           KERET++R RD R                             R+K+KKED  EPEADPER
Sbjct: 181 KERETKDRDRDRRFILMLLGPLVLPSVQLDGALPCRDFSCFIRHKDKKEDKVEPEADPER 240

Query: 241 DQRTVFAYQICLKATERDVYEFFSRAGK---------VRDVRLIMDRNSRRSKGVGYVEF 300
           DQRTVFAYQI L+ATERDVYEFFSRAGK         VRDVR+IMDR SRRS+G+GYVEF
Sbjct: 241 DQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEF 300

Query: 301 VDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAAGGTGGAMGPYSGGARRLYVG 360
            D MSVPMAIALSGQPLLGQPVMVKPSEAEKN VQST+AA G GG +GPYSGGARRLYVG
Sbjct: 301 YDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVG 360

Query: 361 NLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFVQFTRLEDARNALSLNGQLEI 420
           NLH  ++ED +R+VF SFG+VELVQ+P DETG CKGFGFVQF RLEDARNAL+LNGQLEI
Sbjct: 361 NLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEI 420

Query: 421 GGRMIKVSTVTDQPGMQDIG--ANTGDLDDEDGGGLSLNASSRASLMQKLDRTGTASSIA 480
            GR IKVS VTDQ  + + G    TGDLDD+DGGGLSLNA SRA LMQKLDR+GTASS  
Sbjct: 421 AGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTASS-- 480

Query: 481 GSLGTHVVNNTGATLPMAPILGAASIPSL-VPSL--ATVPAFPGL-GAGIQVPTVTANLL 540
                     TG T   +   G ++I SL  P+L   + PA  GL G+GI    + A   
Sbjct: 481 ----------TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFD 540

Query: 541 GVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHIHVDKNSAGFVYLRF 596
            +G PSECLLLKNMFDP+ E+E +FD DI++DV+EECS+FGKL HI VDKNS GFVYLRF
Sbjct: 541 PIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRF 597

[Close]

BLAST of MS022176 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 582.0 bits (1499), Expect = 5.4e-166
Identity = 378/644 (58.70%), Postives = 454/644 (70.50%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETAN-GGDAEMKSGDKHRSRSSKYKSDGKDDGEHRSKR 60
           MDFDEY+YLEKTVENP  +   E  N GGD ++KS  K RSRSS+          HR  +
Sbjct: 1   MDFDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDK 60

Query: 61  SKSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKE-DKERNREERSSKDRDV 120
            K  DE  D  R   R+ S HRSRS+DR+RDR RSS+E+R+++ +K+ ++EER+ KDR+ 
Sbjct: 61  KKERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRER 120

Query: 121 DRDRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRS-DRDESIRERSRDNEFKER 180
           DRD+DR         +GRD E+D    RSRRSRS SERHRS +R++S+    ++ E K+R
Sbjct: 121 DRDKDR-------DSKGRDHEKD----RSRRSRSRSERHRSQEREKSLEIEPKERETKDR 180

Query: 181 EKERE-TRERGRD---------------------------------------GRRYKEKK 240
           +++R  T E   D                                        +R+K+KK
Sbjct: 181 DRDRRYTSELVIDFIIYVHWYCLLYNLMGHVPFKIIIVIEGTSRASCVYAYWRKRHKDKK 240

Query: 241 EDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGY 300
           ED  EPEADPERDQRTVFAYQI L+ATERDVYEFFSRAGKVRDVR+IMDR SRRS+G+GY
Sbjct: 241 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 300

Query: 301 VEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTSAAGGTGGAMGPYSGGARRL 360
           VEF D MSVPMAIALSGQPLLGQPVMVKPSEAEKN VQST+AA G GG +GPYSGGARRL
Sbjct: 301 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 360

Query: 361 YVGNLHPEITEDMIRQVFGSFGTVELVQMPLDETGHCKGFGFVQFTRLEDARNALSLNGQ 420
           YVGNLH  ++ED +R+VF SFG+VELVQ+P DETG CKGFGFVQF RLEDARNAL+LNGQ
Sbjct: 361 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQ 420

Query: 421 LEIGGRMIKVSTVTDQPGMQDIG--ANTGDLDDEDGGGLSLNASSRASLMQKLDRTGTAS 480
           LEI GR IKVS VTDQ  + + G    TGDLDD+DGGGLSLNA SRA LMQKLDR+GTAS
Sbjct: 421 LEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTAS 480

Query: 481 SIAGSLGTHVVNNTGATLPMAPILGAASIPSL-VPSL--ATVPAFPGL-GAGIQVPTVTA 540
           S            TG T   +   G ++I SL  P+L   + PA  GL G+GI    + A
Sbjct: 481 S------------TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPA 540

Query: 541 NLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHIHVDKNSAGFVY 596
               +G PSECLLLKNMFDP+ E+E +FD DI++DV+EECS+FGKL HI VDKNS GFVY
Sbjct: 541 GFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVY 600

[Close]

BLAST of MS022176 vs. TAIR 10
Match: AT5G09880.1 (Splicing factor, CC1-like )

HSP 1 Score: 466.1 bits (1198), Expect = 4.3e-131
Identity = 316/596 (53.02%), Postives = 388/596 (65.10%), Query Frame = 0


Query: 1   MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKSDGKDDG-EHRSKR 60
           M+FDEY+YLEKTVE   G   K+  +G +   +S  K      + +  G+++    RSK+
Sbjct: 1   MEFDEYEYLEKTVEEGAGSNKKKEESGNERSERSYRKREGGERQGEEGGEEERVSSRSKK 60

Query: 61  SKSEDESRDHDRHRDRTSSQHRSRSKDRDRDRRRSSKEYREKE-DKERNREERSSKDRDV 120
           S+ + E     + RDR   +HRS S+D+DR+R +  +  R+KE D+ER+ +ER   DRD 
Sbjct: 61  SRGDGEENGGGK-RDRERERHRS-SRDKDRERDKVREGSRDKESDRERSSKERDRSDRDK 120

Query: 121 DRDRDRGHDRDRESRRGRDGERDRERERSRRSRSHSERHRSDRDESIRERSRDNEFKERE 180
            RDR+R                   RER +RS S S R                     E
Sbjct: 121 PRDRER-------------------REREKRSSSRSRR--------------------EE 180

Query: 181 KERETRERGRDGRRYKEKKEDGAEPEADPERDQRTVFAYQICLKATERDVYEFFSRAGKV 240
           KE E  ERG   RR+++KK+   EPEADPERDQRTVFAYQ+ LKATERDVYEFFS+AGKV
Sbjct: 181 KEPEVVERG--SRRHRDKKD---EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKV 240

Query: 241 RDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTS 300
           RDVRLIMDRNSRRSKGVGY+EF D MSVPMAIALSGQ  LGQPVMVKPSEAEKN  QS S
Sbjct: 241 RDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNS 300

Query: 301 -AAGGTGGAMGPYSGGARRLYVGNLHPEITEDMIRQVFGSFGTVELVQMPLD-ETGHCKG 360
              GGTG A        R+LYVGNLH  ++E  +RQ+F +FG VELVQ+PLD ETG CKG
Sbjct: 301 TTVGGTGPA-------DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKG 360

Query: 361 FGFVQFTRLEDARNA-LSLNGQLEIGGRMIKVSTVTDQPGMQDIGANTGDLDDEDGGGLS 420
           FGF+QF +LE ++ A ++LNG+LEI GR IKVS+V+D  G QD    + D DD+DGGGL+
Sbjct: 361 FGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLA 420

Query: 421 LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATLP-MAPILGAASIPSLVPSLATV 480
           LNA SRA LMQKLDR+G A+SI GSLG   +N      P M P     S P+ V     +
Sbjct: 421 LNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMNP-----SFPTSVLPTTAI 480

Query: 481 PAFPGLGAGIQVPTVTANLLGVGAPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRF 540
           P+F                  VG PSECLLLKNMFDP  E+EPNFDL+IRDDV +ECS++
Sbjct: 481 PSFVN--------------EHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKY 524

Query: 541 GKLRHIHVDKNSAGFVYLRFENSQSAMEAQRALNGRWFAGKMIGATFMDIPSYEAK 591
           G + HI+VDKNSAGFVYLRF++ ++A  AQRA++ RWFA KMI ATFM    YEAK
Sbjct: 541 GPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAK 524

The following BLAST results are available for this feature:

BLAST of MS022176 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136109.1	0.0e+00	99.50	RNA-binding protein 39 isoform X2 [Momordica charantia]	[more]
XP_022136108.1	0.0e+00	98.67	RNA-binding protein 39 isoform X1 [Momordica charantia]	[more]
XP_022969035.1	1.6e-276	87.96	RNA-binding protein 39 [Cucurbita maxima] >XP_022969036.1 RNA-binding protein 39...	[more]
XP_022953124.1	6.0e-276	87.96	RNA-binding protein 39-like [Cucurbita moschata] >XP_022953126.1 RNA-binding pro...	[more]
XP_011658601.1	1.3e-275	88.44	RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744308.1 RNA-binding ...	[more]

BLAST of MS022176 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RC80	1.9e-62	36.92	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
Q8VH51	1.6e-61	37.34	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
Q14498	2.0e-61	37.34	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
O13845	1.1e-35	30.36	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
Q86U06	5.8e-32	35.56	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]

BLAST of MS022176 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3C8	0.0e+00	99.50	RNA-binding protein 39 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007883...	[more]
A0A6J1C6Q3	0.0e+00	98.67	RNA-binding protein 39 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007883...	[more]
A0A6J1HYU3	7.6e-277	87.96	RNA-binding protein 39 OS=Cucurbita maxima OX=3661 GN=LOC111468152 PE=4 SV=1	[more]
A0A6J1GM48	2.9e-276	87.96	RNA-binding protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111455622 PE=4 S...	[more]
A0A0A0K4Q5	6.4e-276	88.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014530 PE=4 SV=1	[more]

BLAST of MS022176 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16940.1	1.6e-173	63.35	Splicing factor, CC1-like	[more]
AT2G16940.3	1.4e-166	59.59	Splicing factor, CC1-like	[more]
AT2G16940.2	5.4e-166	58.70	Splicing factor, CC1-like	[more]
AT5G09880.1	4.3e-131	53.02	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..210
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 1..591
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 1..591
None	No IPR available	CDD	cd12283	RRM1_RBM39_like	coord: 213..285 e-value: 3.80181E-44 score: 149.679
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 500..583 e-value: 1.32721E-38 score: 134.98
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 502..580 e-value: 0.52 score: 17.1 coord: 316..388 e-value: 2.3 score: 10.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 316..388 e-value: 5.4E-25 score: 99.0 coord: 213..285 e-value: 2.2E-14 score: 63.8 coord: 502..580 e-value: 4.9E-7 score: 39.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 223..281 e-value: 3.0E-10 score: 39.8 coord: 525..576 e-value: 1.5E-5 score: 24.8 coord: 317..385 e-value: 2.7E-20 score: 72.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 212..289 score: 14.675204
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 501..584 score: 9.285698
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 315..392 score: 18.73439
IPR029123	Splicing factor RBM39, linker	PFAM	PF15519	RBM39linker	coord: 406..518 e-value: 1.3E-20 score: 74.2
IPR006509	Splicing factor, RBM39-like	TIGRFAM	TIGR01622	TIGR01622	coord: 101..593 e-value: 1.2E-155 score: 517.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 205..295 e-value: 3.1E-21 score: 77.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 296..397 e-value: 3.1E-24 score: 87.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 497..595 e-value: 8.1E-31 score: 108.2
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 315..581
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 205..313

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022176.1	MS022176.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding