MS021985 (gene) Bitter gourd (TR) v1

Overview


Name	MS021985
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c biogenesis C
Location	scaffold110: 843085 .. 843159 (+)
RNA-Seq Expression	MS021985
Synteny	MS021985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTACGTTGTTTACTTTAGTACCTGGGGGGTTTCGGAAAAGACCTATATGGGGCACCTTTTGGGTGTGGGAC

mRNA sequence

TTTTTTACGTTGTTTACTTTAGTACCTGGGGGGTTTCGGAAAAGACCTATATGGGGCACCTTTTGGGTGTGGGAC

Coding sequence (CDS)

TTTTTTACGTTGTTTACTTTAGTACCTGGGGGGTTTCGGAAAAGACCTATATGGGGCACCTTTTGGGTGTGGGAC

Protein sequence

FFTLFTLVPGGFRKRPIWGTFWVWD

Homology

[Close]

BLAST of MS021985 vs. NCBI nr
Match: YP_009045777.1 (cytochrome c biogenesis C [Batis maritima] >AIC83380.1 cytochrome c biogenesis C [Batis maritima])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. NCBI nr
Match: YP_009153945.1 (cytochrome c biogenesis C [Gossypium hirsutum] >YP_009153978.1 cytochrome c biogenesis C [Gossypium harknessii] >YP_009177642.1 cytochrome c biogenesis C [Gossypium barbadense] >YP_009250142.1 cytochrome c biogenesis C [Gossypium raimondii] >YP_009388341.1 cytochrome c biogenesis C [Gossypium arboreum] >YP_009388380.1 cytochrome c biogenesis C [Gossypium thurberi] >YP_009388416.1 cytochrome c biogenesis C [Gossypium davidsonii] >YP_009388452.1 cytochrome c biogenesis C [Gossypium trilobum] >YP_009412587.1 cytochrome c biogenesis C [Hibiscus cannabinus] >XP_012482190.1 PREDICTED: putative cytochrome c biosynthesis ccmC-like mitochondrial protein [Gossypium raimondii] >AFO69212.1 cytochrome c biogenesis C [Gossypium hirsutum] >AGA54182.1 cytochrome c biogenesis C [Gossypium hirsutum] >AGA54216.1 cytochrome c biogenesis C [Gossypium harknessii] >AKQ51126.1 cytochrome c biogenesis C [Gossypium barbadense] >AMT85339.1 cytochrome c biogenesis C [Gossypium arboreum])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. NCBI nr
Match: YP_006666113.1 (CcmC [Malus domestica] >YP_009994945.1 CcmC [Sorbus aucuparia] >YP_010047102.1 cytochrome c biogenesis C [Pyrus betulifolia] >QKV49057.1 CcmC [Malus domestica] >QNP09239.1 CcmC [Sorbus aucuparia] >QPJ79539.1 cytochrome c biogenesis C [Pyrus betulifolia] >CBX33373.1 ccmC [Malus domestica])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. NCBI nr
Match: QXE43746.1 (cytochrome c biogenesis C [Cedrus deodara])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. NCBI nr
Match: AHF22773.1 (cytochrome c biogenesis C, partial [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. ExPASy Swiss-Prot
Match: P92527 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMC PE=2 SV=4)

HSP 1 Score: 52.8 bits (125), Expect = 6.7e-07
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGF  RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFWGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. ExPASy Swiss-Prot
Match: P38453 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMC PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.4e-06
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 2   FTLFTLVPGGFRKRPIWGTFWVWD 26
           FTLFTLV GGF  +P+WGTFWVWD
Sbjct: 100 FTLFTLVTGGFWGKPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. ExPASy TrEMBL
Match: E9KZM9 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Vigna radiata var. radiata OX=3916 GN=ccmC PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. ExPASy TrEMBL
Match: S4SKY5 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Gossypium hirsutum OX=3635 GN=ccmC PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. ExPASy TrEMBL
Match: A0A7H1CQT8 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Sapindus mukorossi OX=57655 GN=ccmC PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. ExPASy TrEMBL
Match: A0A224ASH1 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Brassica rapa subsp. nipposinica OX=333344 GN=ccmC PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. ExPASy TrEMBL
Match: A0A0D6CA01 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Brassica nigra OX=3710 GN=ccmC PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. TAIR 10
Match: AT2G07681.1 (Cytochrome C assembly protein )

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-09
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 479 FFTLFTLVTGGFRGRPMWGTFWVWD 503

[Close]

BLAST of MS021985 vs. TAIR 10
Match: AT2G07771.2 (Cytochrome C assembly protein )

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-09
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

[Close]

BLAST of MS021985 vs. TAIR 10
Match: ATMG00900.1 (cytochrome C biogenesis 256 )

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-09
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   FFTLFTLVPGGFRKRPIWGTFWVWD 26
           FFTLFTLV GGFR RP+WGTFWVWD
Sbjct: 99  FFTLFTLVTGGFRGRPMWGTFWVWD 123

The following BLAST results are available for this feature:

BLAST of MS021985 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009045777.1	6.0e-05	88.00	cytochrome c biogenesis C [Batis maritima] >AIC83380.1 cytochrome c biogenesis C...	[more]
YP_009153945.1	6.0e-05	88.00	cytochrome c biogenesis C [Gossypium hirsutum] >YP_009153978.1 cytochrome c biog...	[more]
YP_006666113.1	6.0e-05	88.00	CcmC [Malus domestica] >YP_009994945.1 CcmC [Sorbus aucuparia] >YP_010047102.1 c...	[more]
QXE43746.1	6.0e-05	88.00	cytochrome c biogenesis C [Cedrus deodara]	[more]
AHF22773.1	6.0e-05	88.00	cytochrome c biogenesis C, partial [Dasiphora fruticosa subsp. floribunda]	[more]

BLAST of MS021985 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92527	6.7e-07	84.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsi...	[more]
P38453	7.4e-06	79.17	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia...	[more]

BLAST of MS021985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E9KZM9	2.9e-05	88.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Vigna radi...	[more]
S4SKY5	2.9e-05	88.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Gossypium ...	[more]
A0A7H1CQT8	2.9e-05	88.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Sapindus m...	[more]
A0A224ASH1	2.9e-05	88.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Brassica r...	[more]
A0A0D6CA01	2.9e-05	88.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Brassica n...	[more]

BLAST of MS021985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07681.1	5.6e-09	88.00	Cytochrome C assembly protein	[more]
AT2G07771.2	5.6e-09	88.00	Cytochrome C assembly protein	[more]
ATMG00900.1	5.6e-09	88.00	cytochrome C biogenesis 256	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021985.1	MS021985.1	mRNA