MS021959 (gene) Bitter gourd (TR) v1

Overview
NameMS021959
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold110: 574782 .. 574943 (+)
RNA-Seq ExpressionMS021959
SyntenyMS021959
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGCTAACGTGGGAGGAAGTTGCGGTATCGGGTTGTACATCACCTTTAAAGTGAAGCCTTCTGGTACGCCGGCTGAATACCCAACCACTACATTTCAGGCTCAAGTACTAGATTGTACTGCTGGATATTTTATAGAAGTTTGCAGGATTAAGCCTTCAAAT

mRNA sequence

AAGGCTAACGTGGGAGGAAGTTGCGGTATCGGGTTGTACATCACCTTTAAAGTGAAGCCTTCTGGTACGCCGGCTGAATACCCAACCACTACATTTCAGGCTCAAGTACTAGATTGTACTGCTGGATATTTTATAGAAGTTTGCAGGATTAAGCCTTCAAAT

Coding sequence (CDS)

AAGGCTAACGTGGGAGGAAGTTGCGGTATCGGGTTGTACATCACCTTTAAAGTGAAGCCTTCTGGTACGCCGGCTGAATACCCAACCACTACATTTCAGGCTCAAGTACTAGATTGTACTGCTGGATATTTTATAGAAGTTTGCAGGATTAAGCCTTCAAAT

Protein sequence

KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN
Homology
BLAST of MS021959 vs. NCBI nr
Match: XP_022149809.1 (uncharacterized protein LOC111018153 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN 55
           KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN
Sbjct: 59  KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN 112

BLAST of MS021959 vs. NCBI nr
Match: XP_022975633.1 (uncharacterized protein LOC111475320 [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 7.6e-05
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQV---LDCTAGYFIEVCRIKPSN 55
           KAN  G CG   YITF VKP GT AE+P+ TFQA+V   +       +E+CR KPSN
Sbjct: 102 KANHEGCCGSMYYITFNVKPIGTSAEFPSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

BLAST of MS021959 vs. NCBI nr
Match: XP_022942206.1 (uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 uncharacterized protein LOC111447330 [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQV---LDCTAGYFIEVCRIKPS 54
           KAN  G CG   YITF VKP GTP E+P+ TFQA+V   +       +E+CR KPS
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTPLEFPSITFQAKVYYAIPIKDIIDVELCRPKPS 157

BLAST of MS021959 vs. NCBI nr
Match: XP_023548353.1 (UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548361.1 UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548367.1 UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 29/57 (50.88%), Postives = 34/57 (59.65%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQV---LDCTAGYFIEVCRIKPSN 55
           KAN  G CG   YITF VKP GT  E+P  TFQA+V   +       +E+CR KPSN
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTSVEFPPITFQAKVYYAIPIKDIIDVELCRPKPSN 158

BLAST of MS021959 vs. NCBI nr
Match: XP_022975599.1 (uncharacterized protein LOC111475178 [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQV---LDCTAGYFIEVCRIKPSN 55
           KAN  G CG   YITF VKP GT AE+ + TFQA+V   +       +E+CR KPSN
Sbjct: 102 KANHAGCCGSMYYITFNVKPIGTSAEFSSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

BLAST of MS021959 vs. ExPASy TrEMBL
Match: A0A6J1D850 (uncharacterized protein LOC111018153 OS=Momordica charantia OX=3673 GN=LOC111018153 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN 55
           KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN
Sbjct: 59  KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN 112

BLAST of MS021959 vs. ExPASy TrEMBL
Match: A0A6J1IJT3 (uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQV---LDCTAGYFIEVCRIKPSN 55
           KAN  G CG   YITF VKP GT AE+P+ TFQA+V   +       +E+CR KPSN
Sbjct: 102 KANHEGCCGSMYYITFNVKPIGTSAEFPSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

BLAST of MS021959 vs. ExPASy TrEMBL
Match: A0A6J1FN74 (uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC111447330 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-05
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQV---LDCTAGYFIEVCRIKPS 54
           KAN  G CG   YITF VKP GTP E+P+ TFQA+V   +       +E+CR KPS
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTPLEFPSITFQAKVYYAIPIKDIIDVELCRPKPS 157

BLAST of MS021959 vs. ExPASy TrEMBL
Match: A0A6J1IL21 (uncharacterized protein LOC111475178 OS=Cucurbita maxima OX=3661 GN=LOC111475178 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 1   KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQV---LDCTAGYFIEVCRIKPSN 55
           KAN  G CG   YITF VKP GT AE+ + TFQA+V   +       +E+CR KPSN
Sbjct: 102 KANHAGCCGSMYYITFNVKPIGTSAEFSSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149809.12.1e-23100.00uncharacterized protein LOC111018153 [Momordica charantia][more]
XP_022975633.17.6e-0552.63uncharacterized protein LOC111475320 [Cucurbita maxima][more]
XP_022942206.11.3e-0451.79uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 unchar... [more]
XP_023548353.12.2e-0450.88UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548361.1 UPF0... [more]
XP_022975599.13.8e-0450.88uncharacterized protein LOC111475178 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D8501.0e-23100.00uncharacterized protein LOC111018153 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1IJT33.7e-0552.63uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320... [more]
A0A6J1FN746.3e-0551.79uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC1114473... [more]
A0A6J1IL211.8e-0450.88uncharacterized protein LOC111475178 OS=Cucurbita maxima OX=3661 GN=LOC111475178... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021959.1MS021959.1mRNA