MS021302 (gene) Bitter gourd (TR) v1

Overview
NameMS021302
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Locationscaffold358: 889969 .. 890136 (+)
RNA-Seq ExpressionMS021302
SyntenyMS021302
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCCTTTTAGTTTAGATGTATGGGGTGCTATGATTGCTTGTTCCGGCTCTTCGCATATTATTAGAGGTTGGTTCATGGAGCTTGATTGGGTTTGTTGTATCAGTGTAGCCAATTATCCGCATCGTCGTGTGTGGTGGTTGGCTTGGTCGACGACTATTTATCATATT

mRNA sequence

TGTCCTTTTAGTTTAGATGTATGGGGTGCTATGATTGCTTGTTCCGGCTCTTCGCATATTATTAGAGGTTGGTTCATGGAGCTTGATTGGGTTTGTTGTATCAGTGTAGCCAATTATCCGCATCGTCGTGTGTGGTGGTTGGCTTGGTCGACGACTATTTATCATATT

Coding sequence (CDS)

TGTCCTTTTAGTTTAGATGTATGGGGTGCTATGATTGCTTGTTCCGGCTCTTCGCATATTATTAGAGGTTGGTTCATGGAGCTTGATTGGGTTTGTTGTATCAGTGTAGCCAATTATCCGCATCGTCGTGTGTGGTGGTTGGCTTGGTCGACGACTATTTATCATATT

Protein sequence

CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI
Homology
BLAST of MS021302 vs. NCBI nr
Match: XP_022158861.1 (uncharacterized protein LOC111025324 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTI 54
           CP+S  VW  MI+ +GSSH +  W  EL W+C ++V +   R VW LAW+ T+
Sbjct: 297 CPYSRAVWAGMISWAGSSHRVSYWSTELTWICHVNVGSSSRRHVWRLAWTLTV 349

BLAST of MS021302 vs. NCBI nr
Match: KAA0026044.1 (hypothetical protein E6C27_scaffold581G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1  CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
          CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 20 CPFEGDVWSRVLRVMASSHRIGHWGVELSWICHQGIGKGVRRKLWCVLWCATIYFI 75

BLAST of MS021302 vs. NCBI nr
Match: XP_008452126.1 (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
           CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 858 CPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLWCATIYFI 913

BLAST of MS021302 vs. NCBI nr
Match: KAA0057642.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
           CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 925 CPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLWCATIYFI 980

BLAST of MS021302 vs. NCBI nr
Match: TYK19523.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
           CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 906 CPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLWCATIYFI 961

BLAST of MS021302 vs. ExPASy TrEMBL
Match: A0A6J1E271 (uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025324 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-07
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTI 54
           CP+S  VW  MI+ +GSSH +  W  EL W+C ++V +   R VW LAW+ T+
Sbjct: 297 CPYSRAVWAGMISWAGSSHRVSYWSTELTWICHVNVGSSSRRHVWRLAWTLTV 349

BLAST of MS021302 vs. ExPASy TrEMBL
Match: A0A5A7SK23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00300 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1  CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
          CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 20 CPFEGDVWSRVLRVMASSHRIGHWGVELSWICHQGIGKGVRRKLWCVLWCATIYFI 75

BLAST of MS021302 vs. ExPASy TrEMBL
Match: A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
           CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 925 CPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLWCATIYFI 980

BLAST of MS021302 vs. ExPASy TrEMBL
Match: A0A5D3D7P6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00080 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
           CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 906 CPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLWCATIYFI 961

BLAST of MS021302 vs. ExPASy TrEMBL
Match: A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   CPFSLDVWGAMIACSGSSHIIRGWFMELDWVCCISVANYPHRRVWWLAWSTTIYHI 57
           CPF  DVW  ++    SSH I  W +EL W+C   +     R++W + W  TIY I
Sbjct: 858 CPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLWCATIYFI 913

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158861.11.9e-0645.28uncharacterized protein LOC111025324 [Momordica charantia][more]
KAA0026044.12.3e-0439.29hypothetical protein E6C27_scaffold581G00300 [Cucumis melo var. makuwa][more]
XP_008452126.13.9e-0439.29PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
KAA0057642.13.9e-0439.29reverse transcriptase [Cucumis melo var. makuwa][more]
TYK19523.13.9e-0439.29reverse transcriptase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E2719.1e-0745.28uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7SK231.1e-0439.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UP651.9e-0439.29Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... [more]
A0A5D3D7P61.9e-0439.29Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold41... [more]
A0A1S3BSI81.9e-0439.29uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021302.1MS021302.1mRNA