MS020176 (gene) Bitter gourd (TR) v1

Overview


Name	MS020176
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	arabinogalactan protein 23
Location	scaffold735: 24940 .. 25179 (+)
RNA-Seq Expression	MS020176
Synteny	MS020176

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGTGGTACCCGGTGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTCTTATTGCCTATTGCCTTCAG

mRNA sequence

ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGTGGTACCCGGTGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTCTTATTGCCTATTGCCTTCAG

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGTGGTACCCGGTGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTCTTATTGCCTATTGCCTTCAG

Protein sequence

MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ

Homology

[Close]

BLAST of MS020176 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-07
Identity = 46/80 (57.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATL 60
          MEMK  A AA +A  ASLSMVLA++                  EA SPAPGP+S  SATL
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASD------------------EAASPAPGPSSGVSATL 60

Query: 61 PGVGALIGASAASLIAYCLQ 81
          P VG L+GASAASLIAYCLQ
Sbjct: 61 PVVGTLLGASAASLIAYCLQ 62

[Close]

BLAST of MS020176 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 43/74 (58.11%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 7  ALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGAL 66
          A AA +  AASLSMVLA++                  EA SPAPGP+SA+SATLP VG L
Sbjct: 3  ACAAFITVAASLSMVLASD------------------EAASPAPGPSSAASATLPVVGTL 58

Query: 67 IGASAASLIAYCLQ 81
          +GASAASLIAYCLQ
Sbjct: 63 LGASAASLIAYCLQ 58

[Close]

BLAST of MS020176 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-05
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATL 60
          MEMKKIA   L AAA+                     AV+AA+E G+PAPGP SA+SA L
Sbjct: 1  MEMKKIACGVLFAAASMT-------------------AVMAAEEVGAPAPGPASAASAAL 60

Query: 61 PGVGALIGASAASLIAYCL 80
          P +G+L+GAS  SL +Y L
Sbjct: 61 PALGSLVGASLVSLFSYYL 60

[Close]

BLAST of MS020176 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-07
Identity = 46/80 (57.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATL 60
          MEMK  A AA +A  ASLSMVLA++                  EA SPAPGP+S  SATL
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASD------------------EAASPAPGPSSGVSATL 60

Query: 61 PGVGALIGASAASLIAYCLQ 81
          P VG L+GASAASLIAYCLQ
Sbjct: 61 PVVGTLLGASAASLIAYCLQ 62

[Close]

BLAST of MS020176 vs. ExPASy TrEMBL
Match: A0A0D2QHJ2 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_002G229700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1   MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSAT 60
           M+MKKI+ A +VA AAS+S V+AA    SPAP   PGA  A+  A + APGP +S + +T
Sbjct: 34  MDMKKISCAVIVAVAASMSEVMAAG-APSPAPASAPGAASASASASAAAPGPDSSVAIST 93

Query: 61  LPGVGALIGASAASLIAYCLQ 81
           +P +G+L+GA+  S  AY LQ
Sbjct: 94  MPVLGSLVGATLVSFFAYYLQ 113

[Close]

BLAST of MS020176 vs. ExPASy TrEMBL
Match: A0A5J5SRV1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G223900v1 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSAT 60
          M+MKKI+ A +VA AAS+S V+AA    SPAP   PGA  A+  A + APGP +S + +T
Sbjct: 1  MDMKKISCAVIVAVAASMSEVMAAG-APSPAPASAPGAASASASASAAAPGPDSSVAIST 60

Query: 61 LPGVGALIGASAASLIAYCLQ 81
          +P +G+L+GA+  S  AY LQ
Sbjct: 61 MPVLGSLVGATLVSFFAYYLQ 80

[Close]

BLAST of MS020176 vs. ExPASy TrEMBL
Match: A0A5D2DTG9 (Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_D01G239200v1 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1   MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSAT 60
           M+MKKI+ A +VA AAS+S V+AA    SPAP   PGA  A+  A + APGP +S + +T
Sbjct: 34  MDMKKISCAVIVAVAASMSEVMAAG-APSPAPASAPGAASASASASAAAPGPDSSVAIST 93

Query: 61  LPGVGALIGASAASLIAYCLQ 81
           +P +G+L+GA+  S  AY LQ
Sbjct: 94  MPVLGSLVGATLVSFFAYYLQ 113

[Close]

BLAST of MS020176 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATL 60
          MEMKKIA   L AAA+                     AV+AA+E G+PAPGP SA+SA L
Sbjct: 1  MEMKKIACGVLFAAASMT-------------------AVMAAEEVGAPAPGPASAASAAL 60

Query: 61 PGVGALIGASAASLIAYCL 80
          P +G+L+GAS  SL +Y L
Sbjct: 61 PALGSLVGASLVSLFSYYL 60

The following BLAST results are available for this feature:

BLAST of MS020176 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035760.1	7.1e-07	57.50	arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga...	[more]
KAE8649766.1	1.3e-05	58.11	hypothetical protein Csa_011936, partial [Cucumis sativus]	[more]

BLAST of MS020176 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	3.1e-05	46.84	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of MS020176 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E271	3.4e-07	57.50	Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0D2QHJ2	6.1e-04	49.38	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_002G2...	[more]
A0A5J5SRV1	6.1e-04	49.38	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G223900v1 PE...	[more]
A0A5D2DTG9	6.1e-04	49.38	Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_D01G2...	[more]

BLAST of MS020176 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	2.2e-06	46.84	arabinogalactan protein 23	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..38
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 38..80
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..38 coord: 38..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020176.1	MS020176.1	mRNA