MS018878 (gene) Bitter gourd (TR) v1

Overview


Name	MS018878
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription factor HEC2-like
Location	scaffold89: 114954 .. 115933 (+)
RNA-Seq Expression	MS018878
Synteny	MS018878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATGGATGTTGACCATTTAAAGTTGGGGGATCCGCAGATGGATATTCTGACCATGATTCAGCAGATGGGAAAATTTCCGGAGTTGTTAGAATTTACTGAACTCTCACCCTCGGCTTTTGGGAGTTCCAATGCCGCTACTTCACTTCTCTTGGAAAACCCAAATCCCAATTTCTCTTCATTTAATCTGCCATCCACCGTTTCAATGAATAACCCCACTGACCCAGCTGGGCGACCACCGTGTTTTCTGCCATTTTCCGCCGCCGGCCGGTGGAGGAGTCAAATTGCCGCTGCCGGAAATTCCGACACAGTAAGATTCTATACCACTCATATATAACTTAACTAGTCGAGGTATACTGAAATGCTATGCAAATATTCACTTCAAACACTTTTTTAATTAGGACAATATTTTTCTATGAATTGGATGGTACGAGATTAGATTTGATTTCAGCTCTCTACCACTAAATTTTTTTAAGGATTTTTTTTTTCTTTTGAGAAAAAATAACTATTTGTACGTGAAAGGGTGTTTGAGTTCATTATTTATTTATATTGTGAAAATATATATAATTTCAGAAGCAGAATTCGATGGCGGCGATGAGGGAGATGATCTACAGAATGGCGGCGATGCAGCCGATCCACATAGACCCAGAATCCGTGAAGGCGCCGAAGCGGCGGAACGTGAAGATATCAAAAGATCCACAGAGCGTCGCGGCGCGGCACAGGAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATCCACTACGTCAAGTTCTTGAAAAACCAGGTCCAGTCCCTCGAATTCGCCGCCGCAGCCTCCGCCGCCAACCGCCCCACCGCCGCCGGGAGCTACCTCTTCAATCATGCTAGTAATAAGCACTACCAAATTGCTCAAGATTATGGGCATGAGCACATGGAGGATGCT

mRNA sequence

GCCATGGATGTTGACCATTTAAAGTTGGGGGATCCGCAGATGGATATTCTGACCATGATTCAGCAGATGGGAAAATTTCCGGAGTTGTTAGAATTTACTGAACTCTCACCCTCGGCTTTTGGGAGTTCCAATGCCGCTACTTCACTTCTCTTGGAAAACCCAAATCCCAATTTCTCTTCATTTAATCTGCCATCCACCGTTTCAATGAATAACCCCACTGACCCAGCTGGGCGACCACCGTGTTTTCTGCCATTTTCCGCCGCCGGCCGGTGGAGGAGTCAAATTGCCGCTGCCGGAAATTCCGACACAAAGCAGAATTCGATGGCGGCGATGAGGGAGATGATCTACAGAATGGCGGCGATGCAGCCGATCCACATAGACCCAGAATCCGTGAAGGCGCCGAAGCGGCGGAACGTGAAGATATCAAAAGATCCACAGAGCGTCGCGGCGCGGCACAGGAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATCCACTACGTCAAGTTCTTGAAAAACCAGGTCCAGTCCCTCGAATTCGCCGCCGCAGCCTCCGCCGCCAACCGCCCCACCGCCGCCGGGAGCTACCTCTTCAATCATGCTAGTAATAAGCACTACCAAATTGCTCAAGATTATGGGCATGAGCACATGGAGGATGCT

Coding sequence (CDS)

GCCATGGATGTTGACCATTTAAAGTTGGGGGATCCGCAGATGGATATTCTGACCATGATTCAGCAGATGGGAAAATTTCCGGAGTTGTTAGAATTTACTGAACTCTCACCCTCGGCTTTTGGGAGTTCCAATGCCGCTACTTCACTTCTCTTGGAAAACCCAAATCCCAATTTCTCTTCATTTAATCTGCCATCCACCGTTTCAATGAATAACCCCACTGACCCAGCTGGGCGACCACCGTGTTTTCTGCCATTTTCCGCCGCCGGCCGGTGGAGGAGTCAAATTGCCGCTGCCGGAAATTCCGACACAAAGCAGAATTCGATGGCGGCGATGAGGGAGATGATCTACAGAATGGCGGCGATGCAGCCGATCCACATAGACCCAGAATCCGTGAAGGCGCCGAAGCGGCGGAACGTGAAGATATCAAAAGATCCACAGAGCGTCGCGGCGCGGCACAGGAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATCCACTACGTCAAGTTCTTGAAAAACCAGGTCCAGTCCCTCGAATTCGCCGCCGCAGCCTCCGCCGCCAACCGCCCCACCGCCGCCGGGAGCTACCTCTTCAATCATGCTAGTAATAAGCACTACCAAATTGCTCAAGATTATGGGCATGAGCACATGGAGGATGCT

Protein sequence

AMDVDHLKLGDPQMDILTMIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPNFSSFNLPSTVSMNNPTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLEFAAAASAANRPTAAGSYLFNHASNKHYQIAQDYGHEHMEDA

Homology

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BLAST of MS018878 vs. NCBI nr
Match: XP_022996919.1 (transcription factor HEC2-like [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 5.9e-57
Identity = 150/235 (63.83%), Postives = 167/235 (71.06%), Query Frame = 0


Query: 14  MDILTMIQQMGKFPELLEFTEL--SPSAFGSSN-AATSLLLENPNPNFSSFNLPSTVSMN 73
           MD+LT   QM  F E  EFT+L  SP +FGSSN  ATS+  +NP P   S+ L ST SMN
Sbjct: 1   MDVLT---QMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPTPILPSYALSSTASMN 60

Query: 74  NPTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTK--QNSMAAMREMIYRMAAMQPIHIDP 133
           N T P   PPC  P S+        AA  NS TK  Q+SM AMREMIYR+AAMQPI IDP
Sbjct: 61  NATHPLA-PPCLPPHSS--------AATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDP 120

Query: 134 ESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVK 193
           E+VK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVK
Sbjct: 121 EAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVK 180

Query: 194 FLKNQVQSLEFAAAASAANRPTAAGSY---LFNHASN-KHYQIAQDYGHEHMEDA 240
           FLKNQVQ L+ A    A NRP++A  +   +    SN K +  AQ  GHEH+EDA
Sbjct: 181 FLKNQVQCLQIA----ANNRPSSAFGFPAAMSAGGSNYKQFHFAQS-GHEHVEDA 218

[Close]

BLAST of MS018878 vs. NCBI nr
Match: KAG7029335.1 (Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-55
Identity = 150/236 (63.56%), Postives = 166/236 (70.34%), Query Frame = 0


Query: 14  MDILTMIQQMGKFPELLEFTEL--SPSAFGSSN-AATSLLLENPNPN-FSSFNLPSTVSM 73
           MD+LT   QM  F E  EFTEL  SP +FGSSN  ATS   +NP P    S+ L ST SM
Sbjct: 1   MDVLT---QMENFSEFFEFTELPSSPFSFGSSNIGATSHRFQNPTPPILPSYALSSTASM 60

Query: 74  NNPTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTK--QNSMAAMREMIYRMAAMQPIHID 133
           NN T P   PPC  P S         AA  NS TK  Q+SM AMREMIYR+AAMQPI ID
Sbjct: 61  NNATHPLA-PPCPPPHSP--------AATPNSHTKQQQDSMGAMREMIYRIAAMQPIQID 120

Query: 134 PESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYV 193
           PE+VK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYV
Sbjct: 121 PEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYV 180

Query: 194 KFLKNQVQSLEFAAAASAANRPTAA----GSYLFNHASNKHYQIAQDYGHEHMEDA 240
           KFLK+QVQSL+ A    A NRP++A     +     ++ K +Q AQ  GHEH+EDA
Sbjct: 181 KFLKSQVQSLQIA----ANNRPSSAFRFPAAMSAGGSNYKQFQFAQS-GHEHVEDA 219

[Close]

BLAST of MS018878 vs. NCBI nr
Match: XP_023546334.1 (transcription factor HEC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.6 bits (571), Expect = 9.4e-55
Identity = 151/237 (63.71%), Postives = 166/237 (70.04%), Query Frame = 0


Query: 14  MDILTMIQQMGKFPELLEFTELS--PSAFGSSN-AATSLLLENPNPN-FSSFNLPSTVSM 73
           MD+LT   QM  F E  EFTEL   P +FGSSN  ATS   +NP P    S+ L ST SM
Sbjct: 1   MDVLT---QMENFSEFFEFTELPSWPFSFGSSNIGATSHRFQNPTPPILPSYALSSTASM 60

Query: 74  NNPTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTK---QNSMAAMREMIYRMAAMQPIHI 133
           NN T P   PPC  P S         AA  NS TK   Q+SM AMREMIYR+AAMQPI I
Sbjct: 61  NNATHPLA-PPCPPPHSP--------AATPNSHTKQQQQDSMGAMREMIYRIAAMQPIQI 120

Query: 134 DPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHY 193
           DPE+VK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHY
Sbjct: 121 DPEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHY 180

Query: 194 VKFLKNQVQSLEFAAAASAANRPTAAGSY---LFNHASN-KHYQIAQDYGHEHMEDA 240
           VKFLK+QVQSL+ A    A NRP++A  +   +    SN K +Q AQ  GHEH+EDA
Sbjct: 181 VKFLKSQVQSLQIA----ANNRPSSAFGFPAAMSAGGSNYKQFQFAQT-GHEHVEDA 220

[Close]

BLAST of MS018878 vs. NCBI nr
Match: KAG6598365.1 (Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.5 bits (558), Expect = 3.0e-53
Identity = 148/234 (63.25%), Postives = 163/234 (69.66%), Query Frame = 0


Query: 14  MDILTMIQQMGKFPELLEFTELSPSAFGSSN-AATSLLLENPNPN-FSSFNLPSTVSMNN 73
           MD+LT   QM  F E  EFT+     FGSSN  ATS   +NP P    S+ L ST SMNN
Sbjct: 1   MDVLT---QMENFSEFFEFTD-----FGSSNIGATSHRFQNPTPPILPSYALSSTASMNN 60

Query: 74  PTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTK--QNSMAAMREMIYRMAAMQPIHIDPE 133
            T P   PPC  P S         AA  NS TK  Q+SM AMREMIYR+AAMQPI IDPE
Sbjct: 61  ATHPLA-PPCPPPHSP--------AATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPE 120

Query: 134 SVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 193
           +VK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKF
Sbjct: 121 AVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 180

Query: 194 LKNQVQSLEFAAAASAANRPTAAGSY---LFNHASN-KHYQIAQDYGHEHMEDA 240
           LK+QVQSL+ A    A NRP++A  +   +    SN K +Q AQ  GHEH+EDA
Sbjct: 181 LKSQVQSLQIA----ANNRPSSAFGFPAAMSAGGSNYKQFQFAQS-GHEHVEDA 212

[Close]

BLAST of MS018878 vs. NCBI nr
Match: XP_038886669.1 (transcription factor HEC2-like [Benincasa hispida])

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-52
Identity = 140/231 (60.61%), Postives = 156/231 (67.53%), Query Frame = 0


Query: 23  MGKF--PELLEFTELS--PSAFGSSNAATSLLLENPNPNFSSFN---LPSTVSMNNPTDP 82
           MG+F   E LE +E+     AFGSSN   S       P FSSFN    PST SMNNPT P
Sbjct: 7   MGEFAVAENLELSEVGGLAFAFGSSNIGVSSSTSTSYPIFSSFNNLPPPSTFSMNNPTQP 66

Query: 83  AGRPPCFLPFSAAGRWRSQ------IAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPE 142
              PP F P+S+A RW S       I+A    + +  SM  MREMIYRMAAMQPI IDPE
Sbjct: 67  VA-PPSFPPYSSAPRWTSSHLPATPISAMKGEEEESESMGGMREMIYRMAAMQPIEIDPE 126

Query: 143 SVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 202
           +VK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHY+KF
Sbjct: 127 TVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKF 186

Query: 203 LKNQVQSLEFAAAASAANRPTAAGSYLFNHASNKH-YQIAQDYGHEHMEDA 240
           LKNQ+ SL+ AAA +    PTA  S      + KH +   Q  GH H+EDA
Sbjct: 187 LKNQLHSLQIAAATTYP-FPTAMSS--GGTTNYKHLFHFPQPSGHNHVEDA 233

[Close]

BLAST of MS018878 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.0e-41
Identity = 108/198 (54.55%), Postives = 127/198 (64.14%), Query Frame = 0


Query: 19  MIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPNFSSFNLPSTVSMNNPTDPAGR 78
           M+QQM K PE   F+  +P    + N    ++L   N +   FN   +    + T P  +
Sbjct: 11  MMQQMEKLPE--HFSNSNP----NPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQ 70

Query: 79  PPCFLPFSAAGRWRSQIAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRN 138
           P   L F  A    S +       +   +MAAMREMI+R+A MQPIHIDPESVK PKR+N
Sbjct: 71  PG--LNFRYAPSPSSSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKN 130

Query: 139 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLE 198
           V+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSLE
Sbjct: 131 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 190

Query: 199 FAAAASAANRPTAAGSYL 217
             A  +       AG  L
Sbjct: 191 EHAVVNGGGMTAVAGGAL 200

[Close]

BLAST of MS018878 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-39
Identity = 101/186 (54.30%), Postives = 118/186 (63.44%), Query Frame = 0


Query: 19  MIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPNFSSFNLPSTVSMNNPTDPAGR 78
           M+ QM K P   EF   + S F   +  T   L N     S  ++ +       +     
Sbjct: 9   MMHQMEKLP---EFCNPNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEPGFRYGSGLLTN 68

Query: 79  PPCFLPFSAAGRWRSQIAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRN 138
           P    P +A            N++    +MAAMREMI+R+A MQPIHIDPE+VK PKRRN
Sbjct: 69  PSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRN 128

Query: 139 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLE 198
           V+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSLE
Sbjct: 129 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 188

Query: 199 FAAAAS 205
             A  +
Sbjct: 189 EQAVVT 191

[Close]

BLAST of MS018878 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.2e-32
Identity = 70/90 (77.78%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 108 MAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRI 167
           + AM+EM+Y++AAMQ + IDP +VK PKRRNV+IS DPQSVAARHRRERISERIRILQR+
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 168 VPGGTKMDTASMLDEAIHYVKFLKNQVQSL 198
           VPGGTKMDTASMLDEAI YVKFLK Q++ L
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of MS018878 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 70/109 (64.22%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 108 MAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRI 167
           M AM+EM Y +A MQP+ IDP +V  P RRNV+IS DPQ+V AR RRERISE+IRIL+RI
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 168 VPGGTKMDTASMLDEAIHYVKFLKNQVQSLEFAAAASAANRPTAAGSYL 217
           VPGG KMDTASMLDEAI Y KFLK QV+ L+     S    P A  SYL
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ---PHSQIGAPMANPSYL 190

[Close]

BLAST of MS018878 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-27
Identity = 63/99 (63.64%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 100 NSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISE 159
           N +    ++A M+EMIYR AA +P++   E V+ PKR+NVKIS DPQ+VAAR RRERISE
Sbjct: 234 NVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISE 293

Query: 160 RIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLE 199
           +IR+LQ +VPGGTKMDTASMLDEA +Y+KFL+ QV++LE
Sbjct: 294 KIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]

BLAST of MS018878 vs. ExPASy TrEMBL
Match: A0A6J1KA10 (transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111492009 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.8e-57
Identity = 150/235 (63.83%), Postives = 167/235 (71.06%), Query Frame = 0


Query: 14  MDILTMIQQMGKFPELLEFTEL--SPSAFGSSN-AATSLLLENPNPNFSSFNLPSTVSMN 73
           MD+LT   QM  F E  EFT+L  SP +FGSSN  ATS+  +NP P   S+ L ST SMN
Sbjct: 1   MDVLT---QMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPTPILPSYALSSTASMN 60

Query: 74  NPTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTK--QNSMAAMREMIYRMAAMQPIHIDP 133
           N T P   PPC  P S+        AA  NS TK  Q+SM AMREMIYR+AAMQPI IDP
Sbjct: 61  NATHPLA-PPCLPPHSS--------AATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDP 120

Query: 134 ESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVK 193
           E+VK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVK
Sbjct: 121 EAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVK 180

Query: 194 FLKNQVQSLEFAAAASAANRPTAAGSY---LFNHASN-KHYQIAQDYGHEHMEDA 240
           FLKNQVQ L+ A    A NRP++A  +   +    SN K +  AQ  GHEH+EDA
Sbjct: 181 FLKNQVQCLQIA----ANNRPSSAFGFPAAMSAGGSNYKQFHFAQS-GHEHVEDA 218

[Close]

BLAST of MS018878 vs. ExPASy TrEMBL
Match: A0A1S3BA85 (transcription factor HEC3-like OS=Cucumis melo OX=3656 GN=LOC103487880 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 9.5e-53
Identity = 138/241 (57.26%), Postives = 165/241 (68.46%), Query Frame = 0


Query: 20  IQQMGKFPELLEFTELSPS---AFGSSN-AATSLLLENPNPNFSSFN--LPSTVSMNNPT 79
           I++MGKF E  E+ E++ +    FGSSN A+TS L+      F SFN   P+T+SMNN T
Sbjct: 3   IEEMGKFGENFEYNEIATTLDFGFGSSNIASTSHLI------FPSFNNIPPTTLSMNNAT 62

Query: 80  DPAGRPPCFLPFSAAGRWRSQIAAAGNSDT----------KQNSMAAMREMIYRMAAMQP 139
            P   PP F P+SAA RWRS   A  NS T           ++    MREMIYR+AAMQP
Sbjct: 63  HPVA-PPSFPPYSAAARWRSHFPATRNSGTTGEEEVEGSESESMGGGMREMIYRIAAMQP 122

Query: 140 IHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEA 199
           I IDPE+VKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEA
Sbjct: 123 IEIDPEAVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEA 182

Query: 200 IHYVKFLKNQVQSLEFAAAASAANR---PTAAGSYLFNHASNK----HYQIAQDYGHEHM 238
           IHY+KFLKNQ+ SL+ AAA+S+++    PT A      H +NK    H+     + H H+
Sbjct: 183 IHYLKFLKNQLHSLQIAAASSSSSAYVFPTVA------HYNNKQHLIHFPQFPTHPHHHL 230

[Close]

BLAST of MS018878 vs. ExPASy TrEMBL
Match: A0A6J1HET7 (transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111462825 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 144/233 (61.80%), Postives = 160/233 (68.67%), Query Frame = 0


Query: 14  MDILTMIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPN-FSSFNLPSTVSMNNP 73
           MD+LT   QM  F E  EFT+     FGSS   TS   +NP P    S+ L ST SMNN 
Sbjct: 1   MDVLT---QMENFSEFFEFTD-----FGSS---TSHRFQNPTPPILPSYALSSTASMNNA 60

Query: 74  TDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTK--QNSMAAMREMIYRMAAMQPIHIDPES 133
           T P   PPC  P S         AA  NS TK  Q+SM AMREMIYR+AAMQPI IDPE+
Sbjct: 61  THPLA-PPCPPPHSP--------AATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEA 120

Query: 134 VKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 193
           VK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL
Sbjct: 121 VKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 180

Query: 194 KNQVQSLEFAAAASAANRPTAA----GSYLFNHASNKHYQIAQDYGHEHMEDA 240
           K+QVQSL+ A    A NRP++A     +     ++ K +Q AQ  GHEH+EDA
Sbjct: 181 KSQVQSLQIA----ANNRPSSAFRFPAAMSAGGSNYKQFQFAQS-GHEHVEDA 208

[Close]

BLAST of MS018878 vs. ExPASy TrEMBL
Match: A0A0A0LRA8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357190 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-51
Identity = 135/241 (56.02%), Postives = 163/241 (67.63%), Query Frame = 0


Query: 20  IQQMGKFPELLEFTELSPS---AFGSSNAATSLLLENPNPNFSSFN--LPSTVSMNNPTD 79
           I++MGKF E  E  E++ S    FGSSN     +    +P F SFN   P+T+SMNN T 
Sbjct: 3   IEEMGKFGENFECNEIATSLDFGFGSSN-----ITSTSHPIFPSFNNIPPTTLSMNNATH 62

Query: 80  PAGRPPCFLPFSAAGRWRSQIAAAGNSDTK-----------QNSMAAMREMIYRMAAMQP 139
            A  PP F P+SAA RWRS   A  NS  K           ++    MREMIYR+AAMQP
Sbjct: 63  -AVAPPSFPPYSAAARWRSHFPATRNSRMKAGEEEVEGSESESMGGGMREMIYRIAAMQP 122

Query: 140 IHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEA 199
           I IDPE+VKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEA
Sbjct: 123 IEIDPEAVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEA 182

Query: 200 IHYVKFLKNQVQSLEFAAAASAANRPTAAGSYLF---NHASNK-----HYQIAQDYGHEH 237
           IHY+KFLKNQ+ SL+ AAA+S+++  +++ +Y F    H +NK     H+     + H H
Sbjct: 183 IHYLKFLKNQLHSLQIAAASSSSS-SSSSSAYAFPTIAHYNNKQQHLIHFPQLPTHPHHH 236

[Close]

BLAST of MS018878 vs. ExPASy TrEMBL
Match: A0A438DYH6 (Transcription factor HEC1 OS=Vitis vinifera OX=29760 GN=HEC1_1 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 4.0e-51
Identity = 133/224 (59.38%), Postives = 152/224 (67.86%), Query Frame = 0


Query: 2   MDVDHLKLGDPQMDILTMIQQMGKFPELL----EFTELSPSAF-GSSNAATSLLLENPNP 61
           MD+D LK   P+  +  M+ QM K PE      E  EL    F G  +A    + +NP+ 
Sbjct: 1   MDIDLLK-SAPEDQMEMMMMQMDKLPEFCGTYNEMAELPSMGFSGGGSATMPQIFDNPHV 60

Query: 62  NFSSF-NLPSTVSMNNPTDP-AGRPPCFLPFSAAGRWR--SQIAAAGNSDT---KQNSMA 121
              +F N PST+S N  T P     P FL  SA  RWR   +++   N  T   K+NSMA
Sbjct: 61  ASPTFINSPSTISFNGTTPPQEPTAPAFLTNSAVARWRGTGELSGVCNLSTPAQKRNSMA 120

Query: 122 AMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVP 181
           AMREMI+R+AAMQP+HIDPESVK PKRRNVKISKDPQSVAARHRRERISE+IRILQR+VP
Sbjct: 121 AMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVP 180

Query: 182 GGTKMDTASMLDEAIHYVKFLKNQVQSLEFAAAASAANRPTAAG 214
           GGTKMDTASMLDEAIHYVKFLK QVQSLE A    AANRP   G
Sbjct: 181 GGTKMDTASMLDEAIHYVKFLKTQVQSLERA----AANRPAGIG 219

[Close]

BLAST of MS018878 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 168.7 bits (426), Expect = 5.7e-42
Identity = 108/198 (54.55%), Postives = 127/198 (64.14%), Query Frame = 0


Query: 19  MIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPNFSSFNLPSTVSMNNPTDPAGR 78
           M+QQM K PE   F+  +P    + N    ++L   N +   FN   +    + T P  +
Sbjct: 11  MMQQMEKLPE--HFSNSNP----NPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQ 70

Query: 79  PPCFLPFSAAGRWRSQIAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRN 138
           P   L F  A    S +       +   +MAAMREMI+R+A MQPIHIDPESVK PKR+N
Sbjct: 71  PG--LNFRYAPSPSSSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKN 130

Query: 139 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLE 198
           V+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSLE
Sbjct: 131 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 190

Query: 199 FAAAASAANRPTAAGSYL 217
             A  +       AG  L
Sbjct: 191 EHAVVNGGGMTAVAGGAL 200

[Close]

BLAST of MS018878 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-40
Identity = 101/186 (54.30%), Postives = 118/186 (63.44%), Query Frame = 0


Query: 19  MIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPNFSSFNLPSTVSMNNPTDPAGR 78
           M+ QM K P   EF   + S F   +  T   L N     S  ++ +       +     
Sbjct: 9   MMHQMEKLP---EFCNPNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEPGFRYGSGLLTN 68

Query: 79  PPCFLPFSAAGRWRSQIAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRN 138
           P    P +A            N++    +MAAMREMI+R+A MQPIHIDPE+VK PKRRN
Sbjct: 69  PSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRN 128

Query: 139 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLE 198
           V+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSLE
Sbjct: 129 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 188

Query: 199 FAAAAS 205
             A  +
Sbjct: 189 EQAVVT 191

[Close]

BLAST of MS018878 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-33
Identity = 70/90 (77.78%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 108 MAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRI 167
           + AM+EM+Y++AAMQ + IDP +VK PKRRNV+IS DPQSVAARHRRERISERIRILQR+
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 168 VPGGTKMDTASMLDEAIHYVKFLKNQVQSL 198
           VPGGTKMDTASMLDEAI YVKFLK Q++ L
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of MS018878 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 9.4e-29
Identity = 70/109 (64.22%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 108 MAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRI 167
           M AM+EM Y +A MQP+ IDP +V  P RRNV+IS DPQ+V AR RRERISE+IRIL+RI
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 168 VPGGTKMDTASMLDEAIHYVKFLKNQVQSLEFAAAASAANRPTAAGSYL 217
           VPGG KMDTASMLDEAI Y KFLK QV+ L+     S    P A  SYL
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ---PHSQIGAPMANPSYL 190

[Close]

BLAST of MS018878 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-28
Identity = 63/99 (63.64%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 100 NSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISE 159
           N +    ++A M+EMIYR AA +P++   E V+ PKR+NVKIS DPQ+VAAR RRERISE
Sbjct: 234 NVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISE 293

Query: 160 RIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLE 199
           +IR+LQ +VPGGTKMDTASMLDEA +Y+KFL+ QV++LE
Sbjct: 294 KIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

The following BLAST results are available for this feature:

BLAST of MS018878 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022996919.1	5.9e-57	63.83	transcription factor HEC2-like [Cucurbita maxima]	[more]
KAG7029335.1	1.9e-55	63.56	Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023546334.1	9.4e-55	63.71	transcription factor HEC1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6598365.1	3.0e-53	63.25	Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038886669.1	1.5e-52	60.61	transcription factor HEC2-like [Benincasa hispida]	[more]

BLAST of MS018878 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SND4	8.0e-41	54.55	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9FHA7	2.0e-39	54.30	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9LXD8	5.2e-32	77.78	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
O81313	1.3e-27	64.22	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
Q8S3D2	1.7e-27	63.64	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]

BLAST of MS018878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA10	2.8e-57	63.83	transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111492009 PE=4 ...	[more]
A0A1S3BA85	9.5e-53	57.26	transcription factor HEC3-like OS=Cucumis melo OX=3656 GN=LOC103487880 PE=4 SV=1	[more]
A0A6J1HET7	4.7e-52	61.80	transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111462825 PE=...	[more]
A0A0A0LRA8	2.3e-51	56.02	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357190 PE=4 S...	[more]
A0A438DYH6	4.0e-51	59.38	Transcription factor HEC1 OS=Vitis vinifera OX=29760 GN=HEC1_1 PE=4 SV=1	[more]

BLAST of MS018878 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50330.1	5.7e-42	54.55	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	1.4e-40	54.30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.7e-33	77.78	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	9.4e-29	64.22	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	1.2e-28	63.64	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 147..196 e-value: 1.5E-13 score: 61.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 151..190 e-value: 1.8E-6 score: 27.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 141..190 score: 15.148091
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 140..208 e-value: 3.2E-12 score: 48.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 145..199
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 2..229
None	No IPR available	PANTHER	PTHR45914:SF29	BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN	coord: 2..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018878.1	MS018878.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity