MS016979 (gene) Bitter gourd (TR) v1

Overview


Name	MS016979
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	auxin-regulated gene involved in organ size
Location	scaffold197: 210227 .. 210451 (+)
RNA-Seq Expression	MS016979
Synteny	MS016979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGCATTCTTTAGCTGGAGATCGGCGGTAATGTTGATTGGTGTGGCGGTGTCGCTTCTGATATTGCCGGTGGTGCTGCCGCCGCTGCCGCCGCCGCCGCTTCTGCTGCTGTTTGTTCCGGTGCTGATCATGTCGCTGCTCGTATTCTTGGCGATGTCGCCGTCGCAAGTGCCGGCGGAGGACAGCCATGTTGCCGCCGCCCACGGCCACGATTCTGCT

mRNA sequence

ATGGTGAGAGCATTCTTTAGCTGGAGATCGGCGGTAATGTTGATTGGTGTGGCGGTGTCGCTTCTGATATTGCCGGTGGTGCTGCCGCCGCTGCCGCCGCCGCCGCTTCTGCTGCTGTTTGTTCCGGTGCTGATCATGTCGCTGCTCGTATTCTTGGCGATGTCGCCGTCGCAAGTGCCGGCGGAGGACAGCCATGTTGCCGCCGCCCACGGCCACGATTCTGCT

Coding sequence (CDS)

ATGGTGAGAGCATTCTTTAGCTGGAGATCGGCGGTAATGTTGATTGGTGTGGCGGTGTCGCTTCTGATATTGCCGGTGGTGCTGCCGCCGCTGCCGCCGCCGCCGCTTCTGCTGCTGTTTGTTCCGGTGCTGATCATGTCGCTGCTCGTATTCTTGGCGATGTCGCCGTCGCAAGTGCCGGCGGAGGACAGCCATGTTGCCGCCGCCCACGGCCACGATTCTGCT

Protein sequence

MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAEDSHVAAAHGHDSA

Homology

[Close]

BLAST of MS016979 vs. NCBI nr
Match: KAG6603314.1 (hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          MVRAFFS RS  MLI VA SLLILP+VLPPLPPPP+LLLFVPVLIM  L+FLA+SPS+VP
Sbjct: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60

Query: 61 AEDSHVAA--AHGHDSA 76
          AE+  V A    GHDSA
Sbjct: 61 AEEHRVGADGGGGHDSA 77

[Close]

BLAST of MS016979 vs. NCBI nr
Match: KAA0025988.1 (hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 63
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MS016979 vs. NCBI nr
Match: TYK04223.1 (hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 63
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MS016979 vs. NCBI nr
Match: KAG2683596.1 (hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothetical protein I3842_10G039100 [Carya illinoinensis] >KAG7958838.1 hypothetical protein I3843_10G039300 [Carya illinoinensis])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 5  FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 61
          +FS RS V++I +AVSL+++P++LPPLPPPPLLLLFVPVLIMSLLV LA+S S VP
Sbjct: 4  YFSARSIVVMIVLAVSLVVVPLLLPPLPPPPLLLLFVPVLIMSLLVVLALSSSHVP 59

[Close]

BLAST of MS016979 vs. NCBI nr
Match: KAG2687345.1 (hypothetical protein I3760_09G047200 [Carya illinoinensis] >KAG6694413.1 hypothetical protein I3842_09G047400 [Carya illinoinensis] >KAG7962070.1 hypothetical protein I3843_09G047700 [Carya illinoinensis])

HSP 1 Score: 68.2 bits (165), Expect = 3.5e-08
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          M R + S  + V+++ + VSL++LP+V+PPLPPPPLLLLFVPVLIMSLLV LA+SPSQ P
Sbjct: 1  MFRYYMSVGTIVVMVVLTVSLMVLPLVVPPLPPPPLLLLFVPVLIMSLLVVLALSPSQTP 60

[Close]

BLAST of MS016979 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-08
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           +FS  S V+L+G+  SLLILP+VLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of MS016979 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           +FS  S  +L+G+  SLLILP+VLPPLPPPP +LL VP+ IM LLV LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of MS016979 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 4   AFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAED 63
           ++FS  S V+L+G+  SLLILP++LPPLPPPP +LL +P+ IM LL+ LA  PS   +  
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS---SNS 128

Query: 64  SHVAAA 70
            HV+++
Sbjct: 129 KHVSSS 131

[Close]

BLAST of MS016979 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.5e-06
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 9  RSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPA 62
          RS  +L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of MS016979 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAEDS 64
           +FS  S ++L+ V  SL+ILP+VLPPLPPPP +L+ VPV ++ LL+ LA  P+   +  S
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSS 158

[Close]

BLAST of MS016979 vs. ExPASy TrEMBL
Match: A0A0A0L0Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          MVR FFS RS  MLI VAVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+VP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEDSHVAAAHGHDSA 76
          AE+ H       D++
Sbjct: 61 AEEHHETDGGDEDNS 75

[Close]

BLAST of MS016979 vs. ExPASy TrEMBL
Match: A0A5D3BWW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00300 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 63
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MS016979 vs. ExPASy TrEMBL
Match: A0A5A7SII5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003090 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 63
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MS016979 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
           M+  FFS R+ V+++ + VSLL+LPVVLPPLPPPPL+LLF+P+LIM++L+ LA SPSQ+P
Sbjct: 89  MLVRFFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPSQLP 148

[Close]

BLAST of MS016979 vs. ExPASy TrEMBL
Match: A0A2G9HLC2 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09027 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          M R FFS +S V +I + VSLL+LP+VLPPLPPPPL+LL VPV IM++L+FLA++P Q+P
Sbjct: 33 MSRYFFSLKSIVSMILLTVSLLLLPLVLPPLPPPPLMLLLVPVAIMAVLIFLAVTPPQIP 92

[Close]

BLAST of MS016979 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 4   AFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAED 63
           ++FS  S V+L+G+  SLLILP++LPPLPPPP +LL +P+ IM LL+ LA  PS   +  
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS---SNS 128

Query: 64  SHVAAA 70
            HV+++
Sbjct: 129 KHVSSS 131

[Close]

BLAST of MS016979 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           +FS  S  +L+G+  SLLILP+VLPPLPPPP +LL VP+ IM LLV LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of MS016979 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 9  RSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPA 62
          RS  +L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of MS016979 vs. TAIR 10
Match: AT2G41225.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 7.3e-04
Identity = 26/64 (40.62%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 12 VMLIGVAVSLL-ILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAEDSHVAAAH 71
          + +IGV + LL +LP VLPPLPPPP++L+ +PV++M +L++LA+     P   +H  ++ 
Sbjct: 1  MFVIGVVMVLLAVLPAVLPPLPPPPMILMGIPVVLMLMLIYLAI---YYPPHQAHFLSSS 60

Query: 72 GHDS 75
            D+
Sbjct: 61 SFDT 61

The following BLAST results are available for this feature:

BLAST of MS016979 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603314.1	2.3e-15	74.03	hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025988.1	1.4e-09	84.00	hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa]	[more]
TYK04223.1	1.4e-09	84.00	hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa]	[more]
KAG2683596.1	2.1e-08	71.43	hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothe...	[more]
KAG2687345.1	3.5e-08	65.00	hypothetical protein I3760_09G047200 [Carya illinoinensis] >KAG6694413.1 hypothe...	[more]

BLAST of MS016979 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C7SFP6	6.2e-08	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q6NMD6	1.8e-07	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
Q8RXL7	1.8e-07	50.00	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q8RWS1	4.5e-06	56.60	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1	[more]
Q7X6L2	2.2e-05	48.33	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]

BLAST of MS016979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7	1.9e-15	72.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1	[more]
A0A5D3BWW3	6.9e-10	84.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SII5	6.9e-10	84.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5B7AL58	1.2e-09	63.33	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]
A0A2G9HLC2	2.2e-08	63.33	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09027 P...	[more]

BLAST of MS016979 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44080.1	1.3e-08	50.00	ARGOS-like	[more]
AT3G59900.1	1.3e-08	62.26	auxin-regulated gene involved in organ size	[more]
AT2G41230.1	3.2e-07	56.60	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]
AT2G41225.1	7.3e-04	40.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..65
None	No IPR available	PANTHER	PTHR38928:SF8	ARGOS7	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016979.1	MS016979.1	mRNA